AT3G59200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Forward (+)
21887123 .. 21889423
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59200.1

Sequence Viewer

Length: 1563 bp
ATGGATTTTGTCTCAAGAGATAGAATCAGCAGTCTACCAAATCCTGTAGTATCCCACATCTTGTCTTTCCTTCCCACAAAAGAAGCAGCTTCTACTTCGGTCCTCTCCAAAAAATGGCGTTATTTGTTTGCGTATGTAACAAATCTTGACTTTGATGACTCGGACTATCAGGATGGTAAACCAAAAAGCGATGTTGAACTTAGTAGAAGTTTTATGGAATTTGTGGACAGAGTCTTGGCTTTGCAAGGGAATGGTTCCGTAAATAAATTCTCTCTAGAGTGTAGTAATTATGATGTTGATCTTGCTCGTGTCACTGGTTGGATATTGAATGTGTTAGGACGCGGTGTATCAGAGCTTGATTTAAGCATCTTGGAGTATCCCTTACCTTCGGAGATCTTTGTGAGTAAGACACTGGTTAGGCTGAAATTAGGACCGGCAAATGATCTTACTCTCACCCTTGATAGGAAAGATGTTTTTCTTCCAAAGCTCAAGACTCTCTATATTGATTGTGTTGATGTTCAAGAGCGTGGTTTTGGGTTTGTAAAGCTTCTTTCTGGCTGTCCCGTGCTCGAGGAGTTAGTTCTGATGAATATCGGGTGGGAAAATTGGAAGTTTTGCTCTGTGTCTGTCAAAACCCTGAAGAGGCTGACGTTTTTCTGTGAGGAGACTTATGAGAATCCAAAGAGCGTGTCATTTGATACTCCAAACCTTGTTTACCTAGAGTATTCTGACGCTATTGCGAGCAAGTATCCGAAAGTGAACTTTAATTCGCTCGTTGAAGCTCATATCGGTCTTCGACTGACAGAAGATCAGAGTGGAGATGCAGACTTTTCAGAAGAAGACTATTTCTCAGAAGGTGATGAGAAAAAACAGATGGTCGGTAATGCAACGGATTTTCTTAAGGGAATAAGCACTGTTCAGATCCTTTACCTATCTGCCCAAGCTATTGAGGTACTTACTTTCTGCTGTGAGCCAATACCGGTTTTCAACAACCTGATTCAGTTAACAATCGAGAATAACTCAGAAATAAGATGGGATTCACTGCCAGGTCTACTCAAGAACTGTCCAAATCTAGAAACCCTTGTTTTAAAGCGTCTTCTCCACAAGTATAACAAGGCATGTGGGAACGTGTGCTGTTGTAAGCGTCCGAAGCAGCCTTCTTGCCTTTCATCTTCTCCGGTGAAGGTTCTTAAGATATTTCTGTTTGATGACAACGATGAAGAAGACGGGTCGGAAATGAGGCAGATCAAGTATTTCTTGGAGAAAATGCCCCGTCTAGAAGAGTTGGTAGTATACTACAATACAGCATATGACCCTGCTGTGTTAGAATTATCCAAGAAGCTTCAGAAGATTCCTAAGATAGCTTCACCAAAGTGCAAGATCCAGGTAATCTCTGAGAATCTTAGTTTGTCATCTACCGTGCCTTCTTTCTTGACAACGAGATGGTCTTCTCTTCCTCCTGAAGAAGCATATCCATGGGTTGACTCTCCTCCTCCCCAAATAATAGATCCCATGTTAGAGTATGGTTCTCCTCCAGAAGATGATGATTCCTGGTTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

520

Amino Acids

59.0

Weight (kDa)

4.84

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 44 7.6e-08 F-box domain
LRR_At5g56370 PF24758 105 - 239 3.2e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 114
AccI GTMKAC 3 cut(s) 34, 1051, 1293
AccII CGCG 1 cut(s) 342
AciI CCGC 1 cut(s) 342
AclWI GGATC 3 cut(s) 916, 1375, 1502
AcsI RAATTY 2 cut(s) 218, 266
AcuI CTGAAG 3 cut(s) 659, 1328, 1482
AfaI GTAC 2 cut(s) 954, 1559
AfiI CCNNNNNNNGG 3 cut(s) 114, 462, 642
AflII CTTAAG 2 cut(s) 899, 1190
AflIII ACRYGT 1 cut(s) 1128
AgeI ACCGGT 1 cut(s) 979
AgsI TTSAA 5 cut(s) 197, 328, 521, 779, 988
AjnI CCWGG 3 cut(s) 1045, 1383, 1550
AleI CACNNNNGTG 1 cut(s) 1372
AluBI AGCT 8 cut(s) 89, 355, 487, 547, 782, 944, 1342, 1364
AluI AGCT 8 cut(s) 89, 355, 487, 547, 782, 944, 1342, 1364
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 2 cut(s) 16, 659
AlwI GGATC 3 cut(s) 916, 1375, 1502
Ama87I CYCGRG 1 cut(s) 569
ApeKI GCWGC 2 cut(s) 86, 1153
ApoI RAATTY 2 cut(s) 218, 266
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
AsiGI ACCGGT 1 cut(s) 979
AspS9I GGNCC 2 cut(s) 100, 431
AsuHPI GGTGA 4 cut(s) 445, 869, 1192, 1359
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 2 cut(s) 100, 431
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 5 cut(s) 785, 846, 1088, 1230, 1440
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 2 cut(s) 98, 1165
BccI CCATC 4 cut(s) 167, 868, 1026, 1437
BciT130I CCWGG 3 cut(s) 1047, 1385, 1552
BciVI GTATCC 3 cut(s) 61, 387, 759
BcoDI GTCTC 2 cut(s) 16, 659
BfaI CTAG 5 cut(s) 275, 719, 1073, 1277, 1561
BfmI CTRYAG 1 cut(s) 45
BfrI CTTAAG 2 cut(s) 899, 1190
BfuI GTATCC 3 cut(s) 61, 387, 759
BglII AGATCT 1 cut(s) 393
BisI GCNGC 2 cut(s) 87, 1154
BlsI GCNGC 2 cut(s) 88, 1155
Bme1390I CCNGG 3 cut(s) 1047, 1385, 1552
Bme18I GGWCC 2 cut(s) 100, 431
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 2 cut(s) 100, 431
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 3 cut(s) 1047, 1385, 1552
BmsI GCATC 2 cut(s) 375, 811
BpiI GAAGAC 5 cut(s) 785, 846, 1088, 1230, 1440
BplI GAGNNNNNCTC 2 cut(s) 1004, 1036
BpmI CTGGAG 1 cut(s) 1518
BpuEI CTTGAG 2 cut(s) 473, 1040
BsaBI GATNNNNATC 2 cut(s) 297, 590
BsaJI CCNNGG 1 cut(s) 1475
BsaWI WCCGGW 2 cut(s) 979, 1177
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 462, 642
Bse118I RCCGGY 2 cut(s) 433, 979
Bse1I ACTGG 2 cut(s) 319, 417
Bse8I GATNNNNATC 2 cut(s) 297, 590
BseBI CCWGG 3 cut(s) 1047, 1385, 1552
BseDI CCNNGG 1 cut(s) 1475
BseGI GGATG 1 cut(s) 178
BseJI GATNNNNATC 2 cut(s) 297, 590
BseLI CCNNNNNNNGG 3 cut(s) 114, 462, 642
BseMII CTCAG 3 cut(s) 864, 1035, 1386
BseNI ACTGG 2 cut(s) 319, 417
BseRI GAGGAG 5 cut(s) 587, 677, 1479, 1482, 1521
BseXI GCAGC 2 cut(s) 98, 1165
Bsh1236I CGCG 1 cut(s) 342
BshTI ACCGGT 1 cut(s) 979
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 3 cut(s) 434, 980, 1178
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 3 cut(s) 114, 462, 642
BsmAI GTCTC 2 cut(s) 16, 659
BsmFI GGGAC 1 cut(s) 546
BsoBI CYCGRG 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 8 cut(s) 298, 393, 442, 808, 921, 1245, 1380, 1507
Bsp19I CCATGG 1 cut(s) 1475
BspACI CCGC 1 cut(s) 342
BspCNI CTCAG 3 cut(s) 863, 1034, 1387
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 3 cut(s) 916, 1375, 1502
BspTI CTTAAG 2 cut(s) 899, 1190
BsrFI RCCGGY 2 cut(s) 433, 979
BsrI ACTGG 2 cut(s) 319, 417
BssAI RCCGGY 2 cut(s) 433, 979
BssECI CCNNGG 1 cut(s) 1475
BssMI GATC 8 cut(s) 298, 393, 442, 808, 921, 1245, 1380, 1507
BssNAI GTATAC 1 cut(s) 1294
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 1475
Bst1107I GTATAC 1 cut(s) 1294
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 3 cut(s) 1047, 1385, 1552
Bst4CI ACNGT 3 cut(s) 916, 1064, 1420
Bst6I CTCTTC 3 cut(s) 635, 1275, 1458
BstAFI CTTAAG 2 cut(s) 899, 1190
BstC8I GCNNGC 1 cut(s) 742
BstDEI CTNAG 6 cut(s) 200, 850, 1021, 1356, 1395, 1403
BstDSI CCRYGG 1 cut(s) 1475
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 8 cut(s) 301, 396, 445, 811, 924, 1248, 1383, 1510
BstMAI GTCTC 2 cut(s) 16, 659
BstMBI GATC 8 cut(s) 298, 393, 442, 808, 921, 1245, 1380, 1507
BstMWI GCNNNNNNNGC 1 cut(s) 1150
BstNI CCWGG 3 cut(s) 1047, 1385, 1552
BstNSI RCATGY 1 cut(s) 1122
BstSCI CCNGG 3 cut(s) 1045, 1383, 1550
BstSFI CTRYAG 1 cut(s) 45
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 98, 1165
BstV2I GAAGAC 5 cut(s) 785, 846, 1088, 1230, 1440
BstX2I RGATCY 4 cut(s) 393, 921, 1380, 1507
BstYI RGATCY 4 cut(s) 393, 921, 1380, 1507
BstZ17I GTATAC 1 cut(s) 1294
BsuI GTATCC 3 cut(s) 61, 387, 759
BtgI CCRYGG 1 cut(s) 1475
BtgZI GCGATG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 1040
BtsIMutI CAGTG 4 cut(s) 312, 410, 912, 1040
Cac8I GCNNGC 1 cut(s) 742
Cfr10I RCCGGY 2 cut(s) 433, 979
Cfr13I GGNCC 2 cut(s) 100, 431
CseI GACGC 4 cut(s) 348, 740, 1082, 1133
Csp6I GTAC 2 cut(s) 953, 1558
CspAI ACCGGT 1 cut(s) 979
CspCI CAANNNNNGTGG 2 cut(s) 1102, 1137
CviAII CATG 3 cut(s) 1119, 1476, 1513
CviQI GTAC 2 cut(s) 953, 1558
DdeI CTNAG 6 cut(s) 200, 850, 1021, 1356, 1395, 1403
DpnI GATC 8 cut(s) 300, 395, 444, 810, 923, 1247, 1382, 1509
DpnII GATC 8 cut(s) 298, 393, 442, 808, 921, 1245, 1380, 1507
DraI TTTAAA 1 cut(s) 1089
Eam1104I CTCTTC 3 cut(s) 635, 1275, 1458
EarI CTCTTC 3 cut(s) 635, 1275, 1458
Eco130I CCWWGG 1 cut(s) 1475
Eco47I GGWCC 2 cut(s) 100, 431
Eco57I CTGAAG 3 cut(s) 659, 1328, 1482
Eco88I CYCGRG 1 cut(s) 569
EcoRII CCWGG 3 cut(s) 1045, 1383, 1550
EcoT14I CCWWGG 1 cut(s) 1475
ErhI CCWWGG 1 cut(s) 1475
FaeI CATG 3 cut(s) 1122, 1479, 1516
FalI AAGNNNNNCTT 2 cut(s) 1241, 1273
FaqI GGGAC 1 cut(s) 546
FatI CATG 3 cut(s) 1118, 1475, 1512
FauNDI CATATG 1 cut(s) 1309
FblI GTMKAC 3 cut(s) 34, 1051, 1293
Fnu4HI GCNGC 2 cut(s) 87, 1154
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 87, 1154
FspBI CTAG 5 cut(s) 275, 719, 1073, 1277, 1561
GluI GCNGC 2 cut(s) 87, 1154
GsuI CTGGAG 1 cut(s) 1518
HapII CCGG 3 cut(s) 434, 980, 1178
HgaI GACGC 4 cut(s) 348, 740, 1082, 1133
Hin1II CATG 3 cut(s) 1122, 1479, 1516
HincII GTYRAC 2 cut(s) 1005, 1483
HindII GTYRAC 2 cut(s) 1005, 1483
HindIII AAGCTT 2 cut(s) 545, 1340
HpaI GTTAAC 1 cut(s) 1005
HpaII CCGG 3 cut(s) 434, 980, 1178
HphI GGTGA 4 cut(s) 445, 869, 1192, 1359
Hpy166II GTNNAC 9 cut(s) 35, 179, 226, 715, 760, 1005, 1052, 1294, 1483
Hpy8I GTNNAC 9 cut(s) 35, 179, 226, 715, 760, 1005, 1052, 1294, 1483
HpyAV CCTTC 6 cut(s) 80, 396, 848, 1167, 1177, 1434
HpyCH4III ACNGT 3 cut(s) 916, 1064, 1420
HpyCH4IV ACGT 2 cut(s) 650, 1128
HpyCH4V TGCA 4 cut(s) 244, 824, 887, 1377
HpyF10VI GCNNNNNNNGC 1 cut(s) 1150
HpyF3I CTNAG 6 cut(s) 200, 850, 1021, 1356, 1395, 1403
HpySE526I ACGT 2 cut(s) 650, 1128
Hsp92II CATG 3 cut(s) 1122, 1479, 1516
KspAI GTTAAC 1 cut(s) 1005
Kzo9I GATC 8 cut(s) 298, 393, 442, 808, 921, 1245, 1380, 1507
Lsp1109I GCAGC 2 cut(s) 98, 1165
LweI GCATC 2 cut(s) 375, 811
MaeI CTAG 5 cut(s) 275, 719, 1073, 1277, 1561
MaeII ACGT 2 cut(s) 650, 1128
MaeIII GTNAC 2 cut(s) 136, 310
MalI GATC 8 cut(s) 300, 395, 444, 810, 923, 1247, 1382, 1509
MboI GATC 8 cut(s) 298, 393, 442, 808, 921, 1245, 1380, 1507
MflI RGATCY 4 cut(s) 393, 921, 1380, 1507
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 7 cut(s) 218, 266, 286, 425, 604, 766, 1328
MlyI GAGTC 4 cut(s) 152, 240, 487, 1478
MmeI TCCRAC 2 cut(s) 299, 1212
MseI TTAA 6 cut(s) 362, 765, 900, 1004, 1088, 1191
MslI CAYNNNNRTG 2 cut(s) 1372, 1474
MspCI CTTAAG 2 cut(s) 899, 1190
MspI CCGG 3 cut(s) 434, 980, 1178
MspR9I CCNGG 3 cut(s) 1047, 1385, 1552
MvaI CCWGG 3 cut(s) 1047, 1385, 1552
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 1150
NcoI CCATGG 1 cut(s) 1475
NdeI CATATG 1 cut(s) 1309
NdeII GATC 8 cut(s) 298, 393, 442, 808, 921, 1245, 1380, 1507
NlaIII CATG 3 cut(s) 1122, 1479, 1516
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 1122
OliI CACNNNNGTG 1 cut(s) 1372
PaeR7I CTCGAG 1 cut(s) 569
PfeI GAWTC 7 cut(s) 24, 676, 997, 1037, 1351, 1399, 1547
PflFI GACNNNGTC 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 114
PinAI ACCGGT 1 cut(s) 979
PkrI GCNGC 2 cut(s) 88, 1155
PleI GAGTC 4 cut(s) 152, 239, 487, 1478
PpsI GAGTC 4 cut(s) 152, 239, 487, 1478
Psp6I CCWGG 3 cut(s) 1045, 1383, 1550
PspGI CCWGG 3 cut(s) 1045, 1383, 1550
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 100, 431
PspXI VCTCGAGB 1 cut(s) 569
PsuI RGATCY 4 cut(s) 393, 921, 1380, 1507
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 2 cut(s) 954, 1559
RsaNI GTAC 2 cut(s) 953, 1558
RseI CAYNNNNRTG 2 cut(s) 1372, 1474
SaqAI TTAA 6 cut(s) 362, 765, 900, 1004, 1088, 1191
SatI GCNGC 2 cut(s) 87, 1154
Sau3AI GATC 8 cut(s) 298, 393, 442, 808, 921, 1245, 1380, 1507
Sau96I GGNCC 2 cut(s) 100, 431
SchI GAGTC 4 cut(s) 152, 240, 487, 1478
ScrFI CCNGG 3 cut(s) 1047, 1385, 1552
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 2 cut(s) 375, 811
SfcI CTRYAG 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 569
SinI GGWCC 2 cut(s) 100, 431
SlaI CTCGAG 1 cut(s) 569
SmiMI CAYNNNNRTG 2 cut(s) 1372, 1474
SmlI CTYRAG 6 cut(s) 13, 488, 569, 899, 1055, 1190
SmoI CTYRAG 6 cut(s) 13, 488, 569, 899, 1055, 1190
Sse9I AATT 7 cut(s) 218, 266, 286, 425, 604, 766, 1328
SsiI CCGC 1 cut(s) 342
SspMI CTAG 5 cut(s) 275, 719, 1073, 1277, 1561
StyD4I CCNGG 3 cut(s) 1045, 1383, 1550
StyI CCWWGG 1 cut(s) 1475
TaaI ACNGT 3 cut(s) 916, 1064, 1420
TaiI ACGT 2 cut(s) 653, 1131
TaqI TCGA 3 cut(s) 570, 796, 1011
TaqII GACCGA 2 cut(s) 88, 779
TasI AATT 7 cut(s) 218, 266, 286, 425, 604, 766, 1328
TatI WGTACW 1 cut(s) 1557
TfiI GAWTC 7 cut(s) 24, 676, 997, 1037, 1351, 1399, 1547
Tru1I TTAA 6 cut(s) 362, 765, 900, 1004, 1088, 1191
Tru9I TTAA 6 cut(s) 362, 765, 900, 1004, 1088, 1191
TscAI CASTG 4 cut(s) 319, 417, 919, 1047
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 86, 1153
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 602, 1158, 1233
TspGWI ACGGA 2 cut(s) 247, 905
TspRI CASTG 4 cut(s) 319, 417, 919, 1047
Tth111I GACNNNGTC 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 114
Vha464I CTTAAG 2 cut(s) 899, 1190
VpaK11BI GGWCC 2 cut(s) 100, 431
XapI RAATTY 2 cut(s) 218, 266
XbaI TCTAGA 3 cut(s) 274, 1072, 1276
XceI RCATGY 1 cut(s) 1122
XhoI CTCGAG 1 cut(s) 569
XmiI GTMKAC 3 cut(s) 34, 1051, 1293
XspI CTAG 5 cut(s) 275, 719, 1073, 1277, 1561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.