AT3G59170
ERF Family

BEST Arabidopsis thaliana protein match is F-box RNI-like superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Forward (+)
21878167 .. 21879799
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59170.1

Sequence Viewer

Length: 1422 bp
ATGGATTCTGTTTCTAAAGATATGATCAACGTTTTGCCGGACGCACTTCTTTGTCACATCTTGTCATTCCTCACTACAAAAGAAGCTGCTTCAACCTCACTTCTCTCGAGAAGATGGCGTTATCTACTTGCTTTTGTTCCAAACCTTGAATTTGATGACTCTGTCTATCTGCATCGCGATAAAAGGGTAAAGAATACTTTACATGAGAAAGGTTTTGTTGGTTTCGTGCTTTTGGTTAACAATAAAAGGAAGAAACTTTCGACAAGCTTTCCTGATTTCGTAGATAGGATCCTTGCTTTGCAAGGCAATTCTCCTCTAGACAAATTCTCTCTAAAGATGGTTGATGGCCATGATCCTGTTGATCCAGATAGTGTCGTTCCTTGGATACACAAGGTGTTGGTACGTGGTGTATCGGATCTCCATCTGGTCGTAGACATGAATGAATGGACATCTGATCCTCTTCCTTCAAGGATCTTCTTGAGCGAGACATTGGTTAAGCTAACTATCAAAATTAGAGATGGCCCTTTCATTGATGTGAAACATGTTCATCTTCCAAAGCTTAAGACTCTATACCTCCAGTCAGTTATGTTTGATGAGAACGATATTGGGTTTAGAAAGCTCCTTTCTGGTTGTCCCGTGCTCGAAGAACTTGTTCTCGATGGTATGGGGTCGTGTGTATGGACATCTTTCACTGTTTCTGTCGCGACTCTCAAGAGACTGACGTTTTGTTGCCAGAAAATGAGTAGTTTTGGCTATATGCACGATGATGAAAATCCAAATAATGTGTCTTTTGATACTCCAAATCTTGTCTACTTGGAATATGCTCAAGTCATAGCTAACAATTATCCAAAAGTGAATTTTGATTTGCTTGTTGAAGCCAAGATCGATATTTGGATGACAGTGGATCAGATACGAGAGGTGAGACTTAGAAAAAATGAGGTAAACTGTATGGTCGGCAATGCAACAGATTTTATAGTTGGACTCCGCAATGTTCGGGTTCTCTACTTATCTCCCGAAACTCTCGAGGTACTCACATATTGTTGCAAACAAATACCGATATTCGAAAACTTGAGTCATTTAACTATCAAGAGTGACCCAAATGTTGGATGGAAACCATTAACAAAGCTGCTTAAGAATTCTCCAAAACTCGAAACTCTCGTCTTCCAAGGACTCCTTCACAGAGATAACAAGGAGGACGTCGCTATATCATCAAGTTCAGTGAAAGTGTTAAAAATATTCCTTAGTGGTGACAAATTAAAAAAGCAAATAGAGAAGGTCAAGCACTTTTTGAAAACAATGCCTCGTCTTGAACAACTGGTTTTCTACTATGATGTGAAAGTGTTATCGCAACTTCACATGCTTAGTAGGTTAGCTTCACCAAAGTGCAAGATCCACCTTATCCCTAGTCGCGAAAGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

473

Amino Acids

54.12

Weight (kDa)

8.76

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 9 - 42 7.5e-06 F-box-like
F-box PF00646 12 - 43 3.3e-07 F-box domain
LRR_At5g56370 PF24758 127 - 248 4.6e-14 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 186 - 212 2.3e-08 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1200
AccB7I CCANNNNNTGG 1 cut(s) 1103
AccI GTMKAC 2 cut(s) 432, 810
AccII CGCG 3 cut(s) 177, 704, 1410
AciI CCGC 1 cut(s) 985
AclI AACGTT 1 cut(s) 30
AclWI GGATC 9 cut(s) 283, 296, 347, 356, 423, 449, 479, 912, 1384
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 4 cut(s) 149, 323, 856, 1135
AcyI GRCGYC 1 cut(s) 1197
AdeI CACNNNGTG 1 cut(s) 394
AfaI GTAC 2 cut(s) 402, 1029
AfiI CCNNNNNNNGG 1 cut(s) 1103
AflII CTTAAG 2 cut(s) 560, 1130
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 6 cut(s) 93, 149, 468, 875, 1291, 1310
AjuI GAANNNNNNNTTGG 2 cut(s) 1158, 1190
AleI CACNNNNGTG 1 cut(s) 1381
AluBI AGCT 8 cut(s) 86, 267, 499, 559, 619, 836, 1126, 1373
AluI AGCT 8 cut(s) 86, 267, 499, 559, 619, 836, 1126, 1373
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 3 cut(s) 479, 709, 916
AlwI GGATC 9 cut(s) 283, 296, 347, 356, 423, 449, 479, 912, 1384
Ama87I CYCGRG 2 cut(s) 106, 1022
AoxI GGCC 2 cut(s) 346, 520
ApeKI GCWGC 2 cut(s) 86, 1126
ApoI RAATTY 4 cut(s) 149, 323, 856, 1135
ArsI GACNNNNNNTTYG 6 cut(s) 708, 740, 770, 802, 1143, 1175
Asp700I GAANNNNTTC 1 cut(s) 651
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 3 cut(s) 931, 1259, 1368
AsuII TTCGAA 1 cut(s) 1062
AvaI CYCGRG 2 cut(s) 106, 1022
BalI TGGCCA 1 cut(s) 348
BamHI GGATCC 1 cut(s) 288
BarI GAAGNNNNNNTAC 2 cut(s) 1357, 1389
BbsI GAAGAC 1 cut(s) 1153
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 73, 1113
BccI CCATC 7 cut(s) 108, 331, 338, 429, 512, 653, 1101
BciVI GTATCC 1 cut(s) 378
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 3 cut(s) 479, 709, 916
BfaI CTAG 2 cut(s) 317, 1404
BfrI CTTAAG 2 cut(s) 560, 1130
BfuI GTATCC 1 cut(s) 378
BisI GCNGC 2 cut(s) 87, 1127
BlsI GCNGC 2 cut(s) 88, 1128
BmeT110I CYCGRG 2 cut(s) 106, 1022
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 290
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 1153
BpmI CTGGAG 1 cut(s) 560
Bpu14I TTCGAA 1 cut(s) 1062
BpuEI CTTGAG 4 cut(s) 499, 695, 810, 1090
Bsa29I ATCGAT 1 cut(s) 885
BsaAI YACGTR 1 cut(s) 404
BsaBI GATNNNNATC 2 cut(s) 420, 771
BsaHI GRCGYC 1 cut(s) 1197
BsaJI CCNNGG 2 cut(s) 380, 1165
Bsc4I CCNNNNNNNGG 1 cut(s) 1103
Bse1I ACTGG 2 cut(s) 577, 1320
Bse3DI GCAATG 2 cut(s) 964, 994
Bse8I GATNNNNATC 2 cut(s) 420, 771
BseCI ATCGAT 1 cut(s) 885
BseDI CCNNGG 2 cut(s) 380, 1165
BseGI GGATG 2 cut(s) 900, 1112
BseJI GATNNNNATC 2 cut(s) 420, 771
BseLI CCNNNNNNNGG 1 cut(s) 1103
BseMI GCAATG 2 cut(s) 964, 994
BseNI ACTGG 2 cut(s) 577, 1320
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 73, 1113
Bsh1236I CGCG 3 cut(s) 177, 704, 1410
BshFI GGCC 2 cut(s) 348, 522
BshVI ATCGAT 1 cut(s) 885
BsiHKAI GWGCWC 1 cut(s) 642
BsiHKCI CYCGRG 2 cut(s) 106, 1022
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 1 cut(s) 1103
BsmAI GTCTC 3 cut(s) 479, 709, 916
BsmFI GGGAC 1 cut(s) 618
BsnI GGCC 2 cut(s) 348, 522
BsoBI CYCGRG 2 cut(s) 106, 1022
Bsp119I TTCGAA 1 cut(s) 1062
Bsp1286I GDGCHC 1 cut(s) 642
Bsp68I TCGCGA 3 cut(s) 177, 704, 1410
BspACI CCGC 1 cut(s) 985
BspANI GGCC 2 cut(s) 348, 522
BspDI ATCGAT 1 cut(s) 885
BspFNI CGCG 3 cut(s) 177, 704, 1410
BspLI GGNNCC 1 cut(s) 290
BspPI GGATC 9 cut(s) 283, 296, 347, 356, 423, 449, 479, 912, 1384
BspT104I TTCGAA 1 cut(s) 1062
BspTI CTTAAG 2 cut(s) 560, 1130
BsrDI GCAATG 2 cut(s) 964, 994
BsrI ACTGG 2 cut(s) 577, 1320
BssECI CCNNGG 2 cut(s) 380, 1165
BssNI GRCGYC 1 cut(s) 1197
BssT1I CCWWGG 2 cut(s) 380, 1165
Bst4CI ACNGT 3 cut(s) 694, 901, 947
Bst6I CTCTTC 1 cut(s) 465
BstACI GRCGYC 1 cut(s) 1197
BstAFI CTTAAG 2 cut(s) 560, 1130
BstBAI YACGTR 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 1062
BstDEI CTNAG 3 cut(s) 926, 1241, 1361
BstF5I GGATG 2 cut(s) 900, 1112
BstFNI CGCG 3 cut(s) 177, 704, 1410
BstMAI GTCTC 3 cut(s) 479, 709, 916
BstNSI RCATGY 2 cut(s) 545, 1360
BstUI CGCG 3 cut(s) 177, 704, 1410
BstV1I GCAGC 2 cut(s) 73, 1113
BstV2I GAAGAC 1 cut(s) 1153
BstX2I RGATCY 4 cut(s) 288, 415, 471, 1389
BstYI RGATCY 4 cut(s) 288, 415, 471, 1389
Bsu15I ATCGAT 1 cut(s) 885
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 2 cut(s) 348, 522
BsuTUI ATCGAT 1 cut(s) 885
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 2 cut(s) 900, 1112
BtsIMutI CAGTG 3 cut(s) 690, 906, 1224
BtuMI TCGCGA 3 cut(s) 177, 704, 1410
Cfr13I GGNCC 1 cut(s) 521
ClaI ATCGAT 1 cut(s) 885
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 401, 1028
CviAII CATG 5 cut(s) 203, 350, 436, 542, 1357
CviQI GTAC 2 cut(s) 401, 1028
DdeI CTNAG 3 cut(s) 926, 1241, 1361
DraIII CACNNNGTG 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 380, 1165
Eco88I CYCGRG 2 cut(s) 106, 1022
EcoRI GAATTC 1 cut(s) 1135
EcoT14I CCWWGG 2 cut(s) 380, 1165
ErhI CCWWGG 2 cut(s) 380, 1165
FaeI CATG 5 cut(s) 206, 353, 439, 545, 1360
FalI AAGNNNNNCTT 2 cut(s) 1158, 1190
FaqI GGGAC 1 cut(s) 618
FatI CATG 5 cut(s) 202, 349, 435, 541, 1356
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 2 cut(s) 432, 810
Fnu4HI GCNGC 2 cut(s) 87, 1127
FokI GGATG 2 cut(s) 907, 1119
Fsp4HI GCNGC 2 cut(s) 87, 1127
FspBI CTAG 2 cut(s) 317, 1404
GluI GCNGC 2 cut(s) 87, 1127
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 2 cut(s) 348, 522
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 1197
Hin1II CATG 5 cut(s) 206, 353, 439, 545, 1360
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 265, 557
HinfI GANTC 7 cut(s) 5, 158, 565, 706, 981, 1072, 1170
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 1 cut(s) 38
HphI GGTGA 3 cut(s) 931, 1259, 1368
Hpy166II GTNNAC 4 cut(s) 238, 433, 811, 943
Hpy188I TCNGA 3 cut(s) 415, 454, 909
Hpy8I GTNNAC 4 cut(s) 238, 433, 811, 943
Hpy99I CGWCG 1 cut(s) 1202
HpyAV CCTTC 3 cut(s) 474, 1184, 1267
HpyCH4III ACNGT 3 cut(s) 694, 901, 947
HpyCH4IV ACGT 4 cut(s) 30, 403, 722, 1197
HpyCH4V TGCA 6 cut(s) 172, 301, 760, 962, 1044, 1386
HpyF3I CTNAG 3 cut(s) 926, 1241, 1361
HpySE526I ACGT 4 cut(s) 30, 403, 722, 1197
Hsp92I GRCGYC 1 cut(s) 1197
Hsp92II CATG 5 cut(s) 206, 353, 439, 545, 1360
Ksp22I TGATCA 1 cut(s) 24
KspAI GTTAAC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 624
LpnPI CCDG 9 cut(s) 51, 285, 369, 378, 410, 590, 612, 746, 1301
Lsp1109I GCAGC 2 cut(s) 73, 1113
LweI GCATC 1 cut(s) 181
MaeI CTAG 2 cut(s) 317, 1404
MaeII ACGT 4 cut(s) 30, 403, 722, 1197
MaeIII GTNAC 3 cut(s) 53, 1091, 1247
MboII GAAGA 7 cut(s) 123, 262, 452, 466, 542, 656, 1153
MflI RGATCY 4 cut(s) 288, 415, 471, 1389
MhlI GDGCHC 1 cut(s) 642
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 8 cut(s) 149, 307, 323, 510, 841, 856, 1135, 1253
MluNI TGGCCA 1 cut(s) 348
MlyI GAGTC 6 cut(s) 152, 559, 700, 975, 1081, 1164
MmeI TCCRAC 2 cut(s) 958, 1084
Mox20I TGGCCA 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 651
MscI TGGCCA 1 cut(s) 348
MseI TTAA 8 cut(s) 237, 495, 561, 1079, 1118, 1131, 1229, 1256
MslI CAYNNNNRTG 3 cut(s) 533, 765, 1381
Msp20I TGGCCA 1 cut(s) 348
MspCI CTTAAG 2 cut(s) 560, 1130
MspI CCGG 1 cut(s) 38
MvnI CGCG 3 cut(s) 177, 704, 1410
NlaIII CATG 5 cut(s) 206, 353, 439, 545, 1360
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 3 cut(s) 53, 1091, 1247
NruI TCGCGA 3 cut(s) 177, 704, 1410
NspI RCATGY 2 cut(s) 545, 1360
NspV TTCGAA 1 cut(s) 1062
OliI CACNNNNGTG 1 cut(s) 1381
PaeR7I CTCGAG 2 cut(s) 106, 1022
PciI ACATGT 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 1155
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 1103
PkrI GCNGC 2 cut(s) 88, 1128
PleI GAGTC 6 cut(s) 152, 559, 700, 975, 1080, 1164
PpsI GAGTC 6 cut(s) 152, 559, 700, 975, 1080, 1164
Ppu21I YACGTR 1 cut(s) 404
PscI ACATGT 1 cut(s) 541
Psp1406I AACGTT 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 521
PsuI RGATCY 4 cut(s) 288, 415, 471, 1389
PsyI GACNNNGTC 1 cut(s) 161
RruI TCGCGA 3 cut(s) 177, 704, 1410
RsaI GTAC 2 cut(s) 402, 1029
RsaNI GTAC 2 cut(s) 401, 1028
RseI CAYNNNNRTG 3 cut(s) 533, 765, 1381
SaqAI TTAA 8 cut(s) 237, 495, 561, 1079, 1118, 1131, 1229, 1256
SatI GCNGC 2 cut(s) 87, 1127
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 6 cut(s) 152, 559, 700, 975, 1081, 1164
SduI GDGCHC 1 cut(s) 642
SfaNI GCATC 1 cut(s) 181
Sfr274I CTCGAG 2 cut(s) 106, 1022
SfuI TTCGAA 1 cut(s) 1062
SlaI CTCGAG 2 cut(s) 106, 1022
SmiMI CAYNNNNRTG 3 cut(s) 533, 765, 1381
SmlI CTYRAG 8 cut(s) 106, 478, 560, 710, 825, 1022, 1069, 1130
SmoI CTYRAG 8 cut(s) 106, 478, 560, 710, 825, 1022, 1069, 1130
Sse9I AATT 8 cut(s) 149, 307, 323, 510, 841, 856, 1135, 1253
SsiI CCGC 1 cut(s) 985
SspI AATATT 1 cut(s) 1236
SspMI CTAG 2 cut(s) 317, 1404
StyI CCWWGG 2 cut(s) 380, 1165
TaaI ACNGT 3 cut(s) 694, 901, 947
TaiI ACGT 4 cut(s) 33, 406, 725, 1200
TaqI TCGA 8 cut(s) 107, 260, 642, 657, 885, 1023, 1062, 1149
TasI AATT 8 cut(s) 149, 307, 323, 510, 841, 856, 1135, 1253
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 8 cut(s) 237, 495, 561, 1079, 1118, 1131, 1229, 1256
Tru9I TTAA 8 cut(s) 237, 495, 561, 1079, 1118, 1131, 1229, 1256
TscAI CASTG 3 cut(s) 697, 906, 1224
TseFI GTSAC 3 cut(s) 53, 1091, 1247
TseI GCWGC 2 cut(s) 86, 1126
Tsp45I GTSAC 3 cut(s) 53, 1091, 1247
TspDTI ATGAA 5 cut(s) 452, 456, 517, 536, 783
TspRI CASTG 3 cut(s) 697, 906, 1224
Tth111I GACNNNGTC 1 cut(s) 161
Van91I CCANNNNNTGG 1 cut(s) 1103
Vha464I CTTAAG 2 cut(s) 560, 1130
XapI RAATTY 4 cut(s) 149, 323, 856, 1135
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 2 cut(s) 545, 1360
XcmI CCANNNNNNNNNTGG 1 cut(s) 1104
XhoI CTCGAG 2 cut(s) 106, 1022
XmiI GTMKAC 2 cut(s) 432, 810
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 2 cut(s) 317, 1404
ZraI GACGTC 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.