AT3G59160
ERF Family

BEST Arabidopsis thaliana protein match is F-box RNI-like superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000813
Physical Location & Seq
Forward (+)
21875023 .. 21876690
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59160.1

Sequence Viewer

Length: 1395 bp
ATGGTGGATTCTAAAAGAATGGATTCTGGTTCTAAAGATATGATCAACGATTTGCCAGACGCACTTCTTTGCCACGTTTTGTCATACCTCACTACAAAAGAAGCTGCTTCAACATCTCTTCTCTCGAGACGATGGCGTTATCTACTTGCTTTTGTTCCAAACCTTGAATTTGATGACTCTGCCTATCTGCATCGCGATAAAAGGGTAAAGAATCCTTTACATGAGAAAGGTTTAGTGGGTTTCGTGCTTACGGTTGATGACAAAAGGAAGAAGCTTTCTACAAGCTTTCCGGATTTCGTGGATAGGATCCTTGATTTACAAGGCAATTCTCCTCTAGACAAATTCTCTCTAAAGATGGTAGATGATCATGATCCTGTTGATCCAGATTGTGTCGCTCCTTGGATACACAAGGTATTGGTACGTGGTGTATCGGATCTCCATCTAGTCATCGATATGAATGAATGGACGTCGCTTCCCGCAAAGATCTTCTTGACTGAGACACTGGTTAAGTTGACTCTAAAGATTAGAGATGGTCCTCCCATTGATGTGAAACATGTTCATCTTCCAAAGCTTAAGACTCTCCATCTCGAGTCAGTTATGTTTGATGAGGAGGATATTGGGTTTAGCAAGCTTCTTTCTGGTTGTCCCGAGCTTGAAGAACTTGTTCTCCATCATATATGGTCGTGTGTATGGACATCTTGCTCTGTTTCTGTTGCGACTCTCAAGAGACTGACCTTTTGTTGCAACAACATGAAGTTTTGCGGTATGCACGAGGAAAATCCAAATAATGTGTCCTTTGATACTCCAAATCTTGTTTACTTGGAATATGCTGAAGTCATAGCGAACAATTATCCAAAAGTGAATTTTGATTCGCTTGTTGAAGCCAAGATCGATATTTGGATGACAAATGATCAGCTAGATGAGGTGAGAATTAGAGACATATATGAGAAAAACGTTATGGTCGGCAATGCAACAGATCTTATAGTTGGAATCCGCAATGTTCGGGTCCTCTGCTTATCCGCTGACACTCTCGAGGTACTCACGTATTGTTGCAAGCAAATACCGATATTCAACAACCTGACTCATGTAACTATCCAGAGTACCCCAAAAGTTGGATGGAAATCATTACTAAAGCTGCTTAAGAATTCTCCAAAGCTTCAAACTCTCGTCTTCCAAGGACTCCTTCACAGAGATACAAAGGAGGAGGGCGTTGCTATCATCAAAATAGAGAAACAAATAGAGAAGGTCAAGCATTTTTTGGAAACAATGCCACATCTTGAACAATTGGTTTTACACTATGATTCATCTATTGACGGAGATATGAAGCAACTTCTGATGCTTAGTAGCTTAGCTTCACCAAAGTGCAAGGTCCAACTTATCCCTTTAGTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

464

Amino Acids

52.89

Weight (kDa)

6.11

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 49 4.6e-08 F-box domain
F-box-like PF12937 15 - 48 1.9e-06 F-box-like
LRR_At5g56370 PF24758 132 - 252 2.7e-13 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 190 - 216 8.6e-08 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 470
AccB7I CCANNNNNTGG 1 cut(s) 1112
AccII CGCG 1 cut(s) 195
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 4 cut(s) 477, 762, 994, 1020
AclI AACGTT 1 cut(s) 954
AclWI GGATC 5 cut(s) 301, 314, 365, 374, 441
AcsI RAATTY 4 cut(s) 167, 341, 862, 1144
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 3 cut(s) 420, 1038, 1102
AfiI CCNNNNNNNGG 1 cut(s) 1112
AflII CTTAAG 2 cut(s) 572, 1139
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 7 cut(s) 111, 167, 656, 881, 1072, 1160, 1280
AjuI GAANNNNNNNTTGG 2 cut(s) 1167, 1199
AleI CACNNNNGTG 1 cut(s) 1360
AloI GAACNNNNNNTCC 2 cut(s) 651, 683
Alw26I GTCTC 4 cut(s) 121, 491, 721, 930
AlwI GGATC 5 cut(s) 301, 314, 365, 374, 441
Ama87I CYCGRG 4 cut(s) 124, 587, 647, 1031
Aor13HI TCCGGA 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 104, 1135
ApoI RAATTY 4 cut(s) 167, 341, 862, 1144
ArsI GACNNNNNNTTYG 4 cut(s) 720, 752, 776, 808
Asp700I GAANNNNTTC 2 cut(s) 22, 663
AspS9I GGNCC 3 cut(s) 533, 1006, 1369
AsuHPI GGTGA 2 cut(s) 937, 1347
AvaI CYCGRG 4 cut(s) 124, 587, 647, 1031
AvaII GGWCC 3 cut(s) 533, 1006, 1369
BaeI ACNNNNGTAYC 2 cut(s) 1028, 1061
BamHI GGATCC 1 cut(s) 306
BarI GAAGNNNNNNTAC 2 cut(s) 1336, 1368
BauI CACGAG 1 cut(s) 770
BbsI GAAGAC 1 cut(s) 1162
BbvI GCAGC 2 cut(s) 91, 1122
BccI CCATC 7 cut(s) 126, 349, 447, 524, 591, 678, 1110
BciVI GTATCC 1 cut(s) 396
BclI TGATCA 3 cut(s) 42, 364, 910
BcoDI GTCTC 4 cut(s) 121, 491, 721, 930
BfaI CTAG 3 cut(s) 335, 443, 917
BfrI CTTAAG 2 cut(s) 572, 1139
BfuI GTATCC 1 cut(s) 396
BglII AGATCT 2 cut(s) 483, 976
BisI GCNGC 2 cut(s) 105, 1136
BlpI GCTNAGC 1 cut(s) 1348
BlsI GCNGC 2 cut(s) 106, 1137
Bme18I GGWCC 3 cut(s) 533, 1006, 1369
BmeT110I CYCGRG 4 cut(s) 124, 587, 647, 1031
BmgT120I GGNCC 3 cut(s) 533, 1006, 1369
BmiI GGNNCC 2 cut(s) 308, 1007
BmsI GCATC 2 cut(s) 199, 1326
BpiI GAAGAC 1 cut(s) 1162
Bpu1102I GCTNAGC 1 cut(s) 1348
BpuEI CTTGAG 1 cut(s) 707
Bsa29I ATCGAT 2 cut(s) 450, 891
BsaAI YACGTR 2 cut(s) 422, 1044
BsaBI GATNNNNATC 3 cut(s) 369, 438, 1120
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 398, 1174
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 1112
Bse1I ACTGG 1 cut(s) 507
Bse3DI GCAATG 2 cut(s) 973, 1003
Bse8I GATNNNNATC 3 cut(s) 369, 438, 1120
BseAI TCCGGA 1 cut(s) 289
BseCI ATCGAT 2 cut(s) 450, 891
BseDI CCNNGG 2 cut(s) 398, 1174
BseGI GGATG 2 cut(s) 906, 1121
BseJI GATNNNNATC 3 cut(s) 369, 438, 1120
BseLI CCNNNNNNNGG 1 cut(s) 1112
BseMI GCAATG 2 cut(s) 973, 1003
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 507
BseRI GAGGAG 3 cut(s) 321, 623, 1217
BseXI GCAGC 2 cut(s) 91, 1122
Bsh1236I CGCG 1 cut(s) 195
BshVI ATCGAT 2 cut(s) 450, 891
BsiHKCI CYCGRG 4 cut(s) 124, 587, 647, 1031
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 1 cut(s) 1112
BsmAI GTCTC 4 cut(s) 121, 491, 721, 930
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 630
BsoBI CYCGRG 4 cut(s) 124, 587, 647, 1031
Bsp13I TCCGGA 1 cut(s) 289
Bsp1720I GCTNAGC 1 cut(s) 1348
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 4 cut(s) 477, 762, 994, 1020
BspCNI CTCAG 1 cut(s) 487
BspDI ATCGAT 2 cut(s) 450, 891
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 308, 1007
BspPI GGATC 5 cut(s) 301, 314, 365, 374, 441
BspTI CTTAAG 2 cut(s) 572, 1139
BsrDI GCAATG 2 cut(s) 973, 1003
BsrI ACTGG 1 cut(s) 507
BssECI CCNNGG 2 cut(s) 398, 1174
BssNI GRCGYC 1 cut(s) 467
BssSI CACGAG 1 cut(s) 770
BssT1I CCWWGG 2 cut(s) 398, 1174
Bst2BI CACGAG 1 cut(s) 770
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 467
BstAFI CTTAAG 2 cut(s) 572, 1139
BstBAI YACGTR 2 cut(s) 422, 1044
BstC8I GCNNGC 2 cut(s) 629, 1055
BstDEI CTNAG 3 cut(s) 495, 1340, 1348
BstF5I GGATG 2 cut(s) 906, 1121
BstFNI CGCG 1 cut(s) 195
BstMAI GTCTC 4 cut(s) 121, 491, 721, 930
BstNSI RCATGY 1 cut(s) 557
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 91, 1122
BstV2I GAAGAC 1 cut(s) 1162
BstX2I RGATCY 4 cut(s) 306, 433, 483, 976
BstYI RGATCY 4 cut(s) 306, 433, 483, 976
Bsu15I ATCGAT 2 cut(s) 450, 891
BsuI GTATCC 1 cut(s) 396
BsuTUI ATCGAT 2 cut(s) 450, 891
BtgZI GCGATG 1 cut(s) 176
BtsCI GGATG 2 cut(s) 906, 1121
BtsIMutI CAGTG 1 cut(s) 500
BtuMI TCGCGA 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 629, 1055
CciI TCATGA 1 cut(s) 367
Cfr13I GGNCC 3 cut(s) 533, 1006, 1369
ClaI ATCGAT 2 cut(s) 450, 891
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 419, 1037, 1101
CviAII CATG 5 cut(s) 221, 368, 554, 751, 1085
CviQI GTAC 3 cut(s) 419, 1037, 1101
DdeI CTNAG 3 cut(s) 495, 1340, 1348
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 398, 1174
Eco47I GGWCC 3 cut(s) 533, 1006, 1369
Eco57I CTGAAG 1 cut(s) 852
Eco88I CYCGRG 4 cut(s) 124, 587, 647, 1031
EcoO109I RGGNCCY 1 cut(s) 1006
EcoRI GAATTC 1 cut(s) 1144
EcoT14I CCWWGG 2 cut(s) 398, 1174
ErhI CCWWGG 2 cut(s) 398, 1174
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 5 cut(s) 224, 371, 557, 754, 1088
FalI AAGNNNNNCTT 4 cut(s) 473, 505, 1167, 1199
FaqI GGGAC 1 cut(s) 630
FatI CATG 5 cut(s) 220, 367, 553, 750, 1084
FauI CCCGC 1 cut(s) 484
FbaI TGATCA 3 cut(s) 42, 364, 910
Fnu4HI GCNGC 2 cut(s) 105, 1136
FokI GGATG 2 cut(s) 913, 1128
Fsp4HI GCNGC 2 cut(s) 105, 1136
FspBI CTAG 3 cut(s) 335, 443, 917
GluI GCNGC 2 cut(s) 105, 1136
HapII CCGG 1 cut(s) 290
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 5 cut(s) 224, 371, 557, 754, 1088
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HindIII AAGCTT 5 cut(s) 272, 283, 569, 629, 1154
HpaII CCGG 1 cut(s) 290
HphI GGTGA 2 cut(s) 937, 1347
Hpy166II GTNNAC 2 cut(s) 513, 817
Hpy188I TCNGA 2 cut(s) 433, 1335
Hpy8I GTNNAC 2 cut(s) 513, 817
Hpy99I CGWCG 1 cut(s) 472
HpyAV CCTTC 2 cut(s) 1193, 1237
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 5 cut(s) 75, 421, 467, 954, 1043
HpyCH4V TGCA 6 cut(s) 190, 744, 769, 971, 1053, 1365
HpyF3I CTNAG 3 cut(s) 495, 1340, 1348
HpySE526I ACGT 5 cut(s) 75, 421, 467, 954, 1043
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 5 cut(s) 224, 371, 557, 754, 1088
Kpn2I TCCGGA 1 cut(s) 289
Ksp22I TGATCA 3 cut(s) 42, 364, 910
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 9 cut(s) 12, 69, 303, 387, 396, 488, 624, 1091, 1109
Lsp1109I GCAGC 2 cut(s) 91, 1122
LweI GCATC 2 cut(s) 199, 1326
MaeI CTAG 3 cut(s) 335, 443, 917
MaeII ACGT 5 cut(s) 75, 421, 467, 954, 1043
MaeIII GTNAC 2 cut(s) 1087, 1387
MboII GAAGA 6 cut(s) 110, 280, 478, 554, 668, 1162
MfeI CAATTG 1 cut(s) 1283
MflI RGATCY 4 cut(s) 306, 433, 483, 976
MluCI AATT 8 cut(s) 167, 325, 341, 847, 862, 930, 1144, 1283
MlyI GAGTC 7 cut(s) 170, 508, 571, 599, 712, 1075, 1173
MmeI TCCRAC 2 cut(s) 967, 1093
MroI TCCGGA 1 cut(s) 289
MroXI GAANNNNTTC 2 cut(s) 22, 663
MseI TTAA 3 cut(s) 507, 573, 1140
MslI CAYNNNNRTG 3 cut(s) 452, 545, 1360
MspA1I CMGCKG 1 cut(s) 1022
MspCI CTTAAG 2 cut(s) 572, 1139
MspI CCGG 1 cut(s) 290
MunI CAATTG 1 cut(s) 1283
MvnI CGCG 1 cut(s) 195
NlaIII CATG 5 cut(s) 224, 371, 557, 754, 1088
NlaIV GGNNCC 2 cut(s) 308, 1007
NruI TCGCGA 1 cut(s) 195
NspI RCATGY 1 cut(s) 557
OliI CACNNNNGTG 1 cut(s) 1360
PaeR7I CTCGAG 3 cut(s) 124, 587, 1031
PagI TCATGA 1 cut(s) 367
PciI ACATGT 1 cut(s) 553
PdmI GAANNNNTTC 2 cut(s) 22, 663
PfeI GAWTC 6 cut(s) 8, 23, 211, 869, 990, 1301
PflMI CCANNNNNTGG 1 cut(s) 1112
PkrI GCNGC 2 cut(s) 106, 1137
PleI GAGTC 7 cut(s) 170, 508, 571, 598, 712, 1075, 1173
PpsI GAGTC 7 cut(s) 170, 508, 571, 598, 712, 1075, 1173
Ppu21I YACGTR 2 cut(s) 422, 1044
PpuMI RGGWCCY 1 cut(s) 1006
PscI ACATGT 1 cut(s) 553
Psp1406I AACGTT 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 1006
PspN4I GGNNCC 2 cut(s) 308, 1007
PspPI GGNCC 3 cut(s) 533, 1006, 1369
PspPPI RGGWCCY 1 cut(s) 1006
PsuI RGATCY 4 cut(s) 306, 433, 483, 976
RruI TCGCGA 1 cut(s) 195
RsaI GTAC 3 cut(s) 420, 1038, 1102
RsaNI GTAC 3 cut(s) 419, 1037, 1101
RseI CAYNNNNRTG 3 cut(s) 452, 545, 1360
SaqAI TTAA 3 cut(s) 507, 573, 1140
SatI GCNGC 2 cut(s) 105, 1136
Sau96I GGNCC 3 cut(s) 533, 1006, 1369
SchI GAGTC 7 cut(s) 170, 508, 571, 599, 712, 1075, 1173
SfaNI GCATC 2 cut(s) 199, 1326
Sfr274I CTCGAG 3 cut(s) 124, 587, 1031
SinI GGWCC 3 cut(s) 533, 1006, 1369
SlaI CTCGAG 3 cut(s) 124, 587, 1031
SmiMI CAYNNNNRTG 3 cut(s) 452, 545, 1360
SmlI CTYRAG 6 cut(s) 124, 572, 587, 722, 1031, 1139
SmoI CTYRAG 6 cut(s) 124, 572, 587, 722, 1031, 1139
Sse9I AATT 8 cut(s) 167, 325, 341, 847, 862, 930, 1144, 1283
SsiI CCGC 4 cut(s) 477, 762, 994, 1020
SspMI CTAG 3 cut(s) 335, 443, 917
StyI CCWWGG 2 cut(s) 398, 1174
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 5 cut(s) 78, 424, 470, 957, 1046
TaqI TCGA 5 cut(s) 125, 450, 588, 891, 1032
TasI AATT 8 cut(s) 167, 325, 341, 847, 862, 930, 1144, 1283
TfiI GAWTC 6 cut(s) 8, 23, 211, 869, 990, 1301
Tru1I TTAA 3 cut(s) 507, 573, 1140
Tru9I TTAA 3 cut(s) 507, 573, 1140
TscAI CASTG 1 cut(s) 507
TseI GCWGC 2 cut(s) 104, 1135
TspDTI ATGAA 6 cut(s) 470, 474, 548, 767, 1293, 1337
TspGWI ACGGA 1 cut(s) 1329
TspRI CASTG 1 cut(s) 507
Van91I CCANNNNNTGG 1 cut(s) 1112
Vha464I CTTAAG 2 cut(s) 572, 1139
VpaK11BI GGWCC 3 cut(s) 533, 1006, 1369
XapI RAATTY 4 cut(s) 167, 341, 862, 1144
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 1113
XhoI CTCGAG 3 cut(s) 124, 587, 1031
XmnI GAANNNNTTC 2 cut(s) 22, 663
XspI CTAG 3 cut(s) 335, 443, 917
ZraI GACGTC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.