Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

5817567 .. 5819352

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAAGCCAAAGAAGAAACCCCGTGGAGCTCTATTTTAGTTCCTTCTGTTCAGGAGATGGTGAAGGATAAGATGATCACGACCGTTCCTCCCAGATATGTTCGGTATGATCAAGACAAAACTGAAGTCGTCGTCCATGATTCTGGCCTCATATCCGAGATCCCCATCATCGACATGAATCGGTTGTGTTCTTCTACCGCCGTGGACTCTGAGGTTGAGAAACTCGACTTTGCTTGCAAAGAATATGGATTTTTCCAGCTTGTAAACCATGGAATAGACCCAAGTTTCTTGGACAAAATAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAAAAAAAGAAGTTGTGGCAGACACCAGCGGTGATGGAAGGGTTTGGACAAGCTTTTGTGGTTTCAGAAGATCAGAAACTCGACTGGGCAGATTTATTCTTCCTTATAATGCAACCTGTTCAATTACGCAAGCGTCACTTGTTCCCCAAGCTACCTCTTCCCTTTAGGGATACGTTAGATATGTATTCCACTCGAGTAAAGAGTATAGCTAAGATCTTACTAGCGAAAATGGCGAAAGCCTTGCAGATCAAGCCAGAGGAGGTAGAAGAAATATTTGGTGATGATATGATGCAGAGTATGAGGATGAACTACTATCCCCCGTGTCCACAACCTAATCTGGTTACGGGTCTAATTCCGCATTCCGATGCAGTCGGGCTCACCATACTTTTGCAGGTGAATGAAGTTGACGGTCTCCAAATCAAGAAAAATGGCAAGTGGTTTTTTGTCAAACCTCTCCAAAATGCTTTCATTGTCAATGTTGGGGACGTGTTAGAGATCATAACGAACGGGACATACCGAAGCATCGAGCACCGGGCAATGGTGAACTTGGAGAAAGAGAGGCTCTCCATTGCGACATTTCACAACACGGGAATGGATAAAGAAATTGGTCCGGCGAGAAGCCTTGTTCAAAGACAAGAGGCTGCAAAGTTTAGAAGCCTGAAAACTAAAGACTACTTGAATGGCTTGTTTTCCCGTGAACTCAAAGGAAAGGCTTATCTTGATGCTATGAGAATTGAAGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

41.4

Weight (kDa)

6.15

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	54 - 157	4.9e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	211 - 308	1.6e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	446
AarI	CACCTGC	1 cut(s)	721
Acc36I	ACCTGC	1 cut(s)	721
AciI	CCGC	3 cut(s)	198, 368, 695
AclWI	GGATC	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	334, 877
AflIII	ACRYGT	1 cut(s)	825
AgsI	TTSAA	6 cut(s)	314, 325, 461, 968, 1018, 1076
AjiI	CACGTC	1 cut(s)	826
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
AluBI	AGCT	5 cut(s)	30, 259, 392, 490, 548
AluI	AGCT	5 cut(s)	30, 259, 392, 490, 548
Alw21I	GWGCWC	2 cut(s)	32, 870
Alw26I	GTCTC	1 cut(s)	755
AlwI	GGATC	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	531
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	980
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspS9I	GGNCC	1 cut(s)	947
AsuC2I	CCSGG	1 cut(s)	872
AsuHPI	GGTGA	6 cut(s)	73, 382, 629, 709, 745, 892
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	947
BanII	GRGCYC	2 cut(s)	32, 717
Bbv12I	GWGCWC	2 cut(s)	32, 870
BbvI	GCAGC	1 cut(s)	967
BccI	CCATC	3 cut(s)	52, 173, 367
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	562, 596
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	2 cut(s)	75, 109
BcnI	CCSGG	1 cut(s)	872
BcoDI	GTCTC	1 cut(s)	755
BfaI	CTAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	721
BfuI	GTATCC	1 cut(s)	502
BglII	AGATCT	1 cut(s)	552
BisI	GCNGC	1 cut(s)	981
BlsI	GCNGC	1 cut(s)	982
Bme1390I	CCNGG	1 cut(s)	872
Bme18I	GGWCC	1 cut(s)	947
BmeT110I	CYCGRG	1 cut(s)	531
BmgBI	CACGTC	1 cut(s)	826
BmgT120I	GGNCC	1 cut(s)	947
BmrFI	CCNGG	1 cut(s)	872
BmrI	ACTGGG	1 cut(s)	433
BmsI	GCATC	4 cut(s)	618, 694, 870, 1051
BmuI	ACTGGG	1 cut(s)	433
BplI	GAGNNNNNCTC	2 cut(s)	887, 919
BpuMI	CCSGG	1 cut(s)	872
BsaBI	GATNNNNATC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	755
BsaJI	CCNNGG	4 cut(s)	23, 201, 268, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 877
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	2 cut(s)	882, 906
Bse8I	GATNNNNATC	1 cut(s)	164
BseDI	CCNNGG	4 cut(s)	23, 201, 268, 333
BseGI	GGATG	1 cut(s)	648
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	334, 877
BseMI	GCAATG	2 cut(s)	882, 906
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	967
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	2 cut(s)	32, 870
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	871, 950
BslFI	GGGAC	2 cut(s)	836, 862
BslI	CCNNNNNNNGG	2 cut(s)	334, 877
BsmAI	GTCTC	1 cut(s)	755
BsmFI	GGGAC	2 cut(s)	836, 862
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	1 cut(s)	147
Bso31I	GGTCTC	1 cut(s)	755
BsoBI	CYCGRG	1 cut(s)	531
Bsp1286I	GDGCHC	3 cut(s)	32, 717, 870
Bsp143I	GATC	7 cut(s)	75, 109, 159, 409, 552, 585, 834
Bsp19I	CCATGG	2 cut(s)	268, 333
BspACI	CCGC	3 cut(s)	198, 368, 695
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	721
BspPI	GGATC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	755
BsrDI	GCAATG	2 cut(s)	882, 906
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	4 cut(s)	23, 201, 268, 333
BssMI	GATC	7 cut(s)	75, 109, 159, 409, 552, 585, 834
BssT1I	CCWWGG	2 cut(s)	268, 333
Bst4CI	ACNGT	2 cut(s)	85, 749
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	235, 470
BstDEI	CTNAG	2 cut(s)	210, 549
BstDSI	CCRYGG	4 cut(s)	23, 201, 268, 333
BstF5I	GGATG	1 cut(s)	648
BstKTI	GATC	7 cut(s)	78, 112, 162, 412, 555, 588, 837
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	7 cut(s)	75, 109, 159, 409, 552, 585, 834
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 589
BstSCI	CCNGG	1 cut(s)	870
BstV1I	GCAGC	1 cut(s)	967
BstX2I	RGATCY	2 cut(s)	159, 552
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	159, 552
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	147
BtgI	CCRYGG	4 cut(s)	23, 201, 268, 333
BtrI	CACGTC	1 cut(s)	826
BtsCI	GGATG	1 cut(s)	648
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	2 cut(s)	235, 470
Cfr13I	GGNCC	1 cut(s)	947
CseI	GACGC	1 cut(s)	461
CviAII	CATG	4 cut(s)	137, 175, 269, 334
DdeI	CTNAG	2 cut(s)	210, 549
DpnI	GATC	7 cut(s)	77, 111, 161, 411, 554, 587, 836
DpnII	GATC	7 cut(s)	75, 109, 159, 409, 552, 585, 834
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	268, 333
Eco24I	GRGCYC	2 cut(s)	32, 717
Eco31I	GGTCTC	1 cut(s)	755
Eco47I	GGWCC	1 cut(s)	947
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	268, 333
EcoT38I	GRGCYC	2 cut(s)	32, 717
ErhI	CCWWGG	2 cut(s)	268, 333
FaeI	CATG	4 cut(s)	140, 178, 272, 337
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	2 cut(s)	836, 862
FatI	CATG	4 cut(s)	136, 174, 268, 333
FbaI	TGATCA	2 cut(s)	75, 109
Fnu4HI	GCNGC	1 cut(s)	981
FokI	GGATG	1 cut(s)	655
FriOI	GRGCYC	2 cut(s)	32, 717
Fsp4HI	GCNGC	1 cut(s)	981
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	1 cut(s)	981
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	2 cut(s)	871, 950
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	140, 178, 272, 337
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	4 cut(s)	140, 178, 206, 310
HpaII	CCGG	2 cut(s)	871, 950
HphI	GGTGA	6 cut(s)	73, 382, 629, 709, 745, 892
Hpy166II	GTNNAC	6 cut(s)	205, 265, 665, 745, 883, 1037
Hpy188I	TCNGA	6 cut(s)	157, 211, 307, 406, 414, 703
Hpy188III	TCNNGA	6 cut(s)	53, 79, 113, 314, 760, 1058
Hpy8I	GTNNAC	6 cut(s)	205, 265, 665, 745, 883, 1037
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	5 cut(s)	54, 58, 338, 371, 1070
HpyCH4III	ACNGT	2 cut(s)	85, 749
HpyCH4IV	ACGT	2 cut(s)	512, 825
HpyCH4V	TGCA	7 cut(s)	237, 451, 583, 631, 707, 730, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 589
HpyF3I	CTNAG	2 cut(s)	210, 549
HpySE526I	ACGT	2 cut(s)	512, 825
Hsp92II	CATG	4 cut(s)	140, 178, 272, 337
Ksp22I	TGATCA	2 cut(s)	75, 109
Kzo9I	GATC	7 cut(s)	75, 109, 159, 409, 552, 585, 834
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	1 cut(s)	967
LweI	GCATC	4 cut(s)	618, 694, 870, 1051
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	2 cut(s)	512, 825
MaeIII	GTNAC	2 cut(s)	473, 679
MalI	GATC	7 cut(s)	77, 111, 161, 411, 554, 587, 836
MboI	GATC	7 cut(s)	75, 109, 159, 409, 552, 585, 834
MboII	GAAGA	8 cut(s)	26, 183, 313, 350, 419, 430, 488, 617
MflI	RGATCY	2 cut(s)	159, 552
MhlI	GDGCHC	3 cut(s)	32, 717, 870
MluCI	AATT	4 cut(s)	461, 690, 942, 1071
MlyI	GAGTC	1 cut(s)	200
MslI	CAYNNNNRTG	3 cut(s)	173, 702, 929
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	2 cut(s)	871, 950
MspR9I	CCNGG	1 cut(s)	872
Mva1269I	GAATGC	1 cut(s)	697
MwoI	GCNNNNNNNGC	2 cut(s)	569, 589
NciI	CCSGG	1 cut(s)	872
NcoI	CCATGG	2 cut(s)	268, 333
NdeII	GATC	7 cut(s)	75, 109, 159, 409, 552, 585, 834
NlaIII	CATG	4 cut(s)	140, 178, 272, 337
NmuCI	GTSAC	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	531
PaqCI	CACCTGC	1 cut(s)	721
PctI	GAATGC	1 cut(s)	697
PfeI	GAWTC	3 cut(s)	140, 178, 310
PkrI	GCNGC	1 cut(s)	982
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	947
PspXI	VCTCGAGB	1 cut(s)	531
PsrI	GAACNNNNNNTAC	2 cut(s)	836, 868
PsuI	RGATCY	2 cut(s)	159, 552
RseI	CAYNNNNRTG	3 cut(s)	173, 702, 929
SacI	GAGCTC	1 cut(s)	32
SatI	GCNGC	1 cut(s)	981
Sau3AI	GATC	7 cut(s)	75, 109, 159, 409, 552, 585, 834
Sau96I	GGNCC	1 cut(s)	947
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	872
SduI	GDGCHC	3 cut(s)	32, 717, 870
SfaNI	GCATC	4 cut(s)	618, 694, 870, 1051
Sfr274I	CTCGAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	947
SlaI	CTCGAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	3 cut(s)	173, 702, 929
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
Sse9I	AATT	4 cut(s)	461, 690, 942, 1071
SsiI	CCGC	3 cut(s)	198, 368, 695
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	1 cut(s)	560
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	870
StyI	CCWWGG	2 cut(s)	268, 333
TaaI	ACNGT	2 cut(s)	85, 749
TaiI	ACGT	2 cut(s)	515, 828
TaqI	TCGA	5 cut(s)	171, 225, 420, 532, 864
TasI	AATT	4 cut(s)	461, 690, 942, 1071
TfiI	GAWTC	3 cut(s)	140, 178, 310
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	1 cut(s)	980
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	191, 659, 753, 796
VpaK11BI	GGWCC	1 cut(s)	947
XhoI	CTCGAG	1 cut(s)	531
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.