Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

12945120 .. 12946778

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAGTCAAAGGAGCAACCCGGAGCTCTATCATAGTTCCTTCTGTTCAAGAGATGGTGAAGGAGAAGATGATCACGACGGTTCCTCCGAGGTATGTACGGTCTGATCAAGACGTAGCTGAGATAGCCGTTGATTCTGGTCTAAGAAACCAGATCCCAATCATAGACATGAGTCTTCTGTGTTCTTCAACCTCCATGGATTCTGAGATTGACAAGCTTGACTCTGCTTGCAAAGAGTGGGGATTTTTTCAGCTTGTAAACCATGGAATGGAGTCAAGTTTCTTGAACAAAGTAAAGTCAGAGGTTCAAGACTTCTTCAACCTTCCCATGGAAGAGAAGAAGAATTTGTGGCAACAACCCGATGAGATCGAAGGGTTTGGACAAGTATTTGTGGTTTCAGAAGAGCAGAAACTCGATTGGGCAGATATGTTCTTCCTTACAATGCAACCTGTTCGATTACGCAAGCCTCACTTGTTCCCCAAGTTACCTCTGCCCTTTAGAGATACACTAGACATGTATTCGGCTGAAGTGAAAAGCATTGCTAAGATCTTACTTGGGAAAATAGCGGTAGCTCTGAAGATCAAACCCGAGGAAATGGATAAGTTGTTTGATGATGAGTTAGGGCAGAGAATTAGGCTGAATTACTACCCGCGTTGTCCAGAGCCCGATAAGGTTATTGGTCTAACTCCGCATTCTGATTCTACAGGACTCACCATACTGTTGCAGGCTAATGAAGTTGAAGGTCTCCAAATCAAGAAAAATGCCAAGTGGGTTTCTGTCAAACCTCTCCCAAATGCTTTGGTTGTCAATGTCGGAGACATCTTAGAGATAATAACGAATGGGACATACCGAAGTATAGAGCATCGTGGAGTTGTGAACTCAGAGAAAGAGAGACTTTCGGTGGCGGCATTCCACAATATAGGATTGGGTAAAGAAATTGGTCCTATGAGAAGTCTCGTGGAAAGGCACAAGGCTGCATTTTTCAAAAGCGTGACTACTGAAGAGTATTTCAATGGCTTGTTTTCCCGTGAGCTCGATGGAAAAGCTTACCTTGATGTTATGAGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

356

Amino Acids

40.41

Weight (kDa)

5.69

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	52 - 160	7.2e-31	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	209 - 306	3.6e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccII	CGCG	1 cut(s)	652
AciI	CCGC	4 cut(s)	566, 650, 689, 905
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	3 cut(s)	546, 596, 1020
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	268, 328
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	8 cut(s)	50, 189, 286, 308, 319, 740, 985, 1012
AluBI	AGCT	7 cut(s)	27, 119, 217, 253, 572, 1033, 1046
AluI	AGCT	7 cut(s)	27, 119, 217, 253, 572, 1033, 1046
Alw21I	GWGCWC	2 cut(s)	29, 1035
Alw26I	GTCTC	5 cut(s)	749, 810, 886, 959, 1057
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	587
ApeKI	GCWGC	1 cut(s)	974
ApoI	RAATTY	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	941
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	70, 703
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	941
BanII	GRGCYC	3 cut(s)	29, 666, 1035
BauI	CACGAG	1 cut(s)	956
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	2 cut(s)	29, 1035
BbvI	GCAGC	1 cut(s)	961
BccI	CCATC	2 cut(s)	49, 1031
BceAI	ACGGC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BclI	TGATCA	2 cut(s)	72, 106
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	5 cut(s)	749, 810, 886, 959, 1057
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	702
BglII	AGATCT	1 cut(s)	546
BisI	GCNGC	2 cut(s)	906, 975
BlsI	GCNGC	2 cut(s)	907, 976
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	941
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	941
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	871
BoxI	GACNNNNGTC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	5 cut(s)	89, 195, 262, 327, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 328
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	158
BseDI	CCNNGG	5 cut(s)	89, 195, 262, 327, 588
BseJI	GATNNNNATC	1 cut(s)	158
BseLI	CCNNNNNNNGG	2 cut(s)	268, 328
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	3 cut(s)	111, 195, 894
BseXI	GCAGC	1 cut(s)	961
Bsh1236I	CGCG	1 cut(s)	652
BsiHKAI	GWGCWC	2 cut(s)	29, 1035
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	856
BslI	CCNNNNNNNGG	2 cut(s)	268, 328
BsmAI	GTCTC	5 cut(s)	749, 810, 886, 959, 1057
BsmFI	GGGAC	1 cut(s)	856
BsmI	GAATGC	2 cut(s)	691, 908
Bso31I	GGTCTC	1 cut(s)	749
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	3 cut(s)	29, 666, 1035
Bsp143I	GATC	6 cut(s)	72, 106, 153, 366, 546, 579
Bsp19I	CCATGG	3 cut(s)	195, 262, 327
BspACI	CCGC	4 cut(s)	566, 650, 689, 905
BspCNI	CTCAG	3 cut(s)	112, 196, 893
BspFNI	CGCG	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	537
BssECI	CCNNGG	5 cut(s)	89, 195, 262, 327, 588
BssMI	GATC	6 cut(s)	72, 106, 153, 366, 546, 579
BssSI	CACGAG	1 cut(s)	956
BssT1I	CCWWGG	3 cut(s)	195, 262, 327
Bst2BI	CACGAG	1 cut(s)	956
Bst4CI	ACNGT	3 cut(s)	82, 102, 720
Bst6I	CTCTTC	3 cut(s)	327, 396, 996
BstC8I	GCNNGC	3 cut(s)	229, 464, 726
BstDEI	CTNAG	6 cut(s)	120, 143, 204, 543, 823, 880
BstDSI	CCRYGG	3 cut(s)	195, 262, 327
BstFNI	CGCG	1 cut(s)	652
BstKTI	GATC	6 cut(s)	75, 109, 156, 369, 549, 582
BstMAI	GTCTC	5 cut(s)	749, 810, 886, 959, 1057
BstMBI	GATC	6 cut(s)	72, 106, 153, 366, 546, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	517
BstPAI	GACNNNNGTC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	702
BstUI	CGCG	1 cut(s)	652
BstV1I	GCAGC	1 cut(s)	961
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	153, 546
BstYI	RGATCY	2 cut(s)	153, 546
BtgI	CCRYGG	3 cut(s)	195, 262, 327
Cac8I	GCNNGC	3 cut(s)	229, 464, 726
Cfr13I	GGNCC	1 cut(s)	941
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	5 cut(s)	169, 196, 263, 328, 514
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	6 cut(s)	120, 143, 204, 543, 823, 880
DpnI	GATC	6 cut(s)	74, 108, 155, 368, 548, 581
DpnII	GATC	6 cut(s)	72, 106, 153, 366, 546, 579
Eam1104I	CTCTTC	3 cut(s)	327, 396, 996
EarI	CTCTTC	3 cut(s)	327, 396, 996
Ecl136II	GAGCTC	2 cut(s)	27, 1033
Eco130I	CCWWGG	3 cut(s)	195, 262, 327
Eco24I	GRGCYC	3 cut(s)	29, 666, 1035
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	941
Eco53kI	GAGCTC	2 cut(s)	27, 1033
Eco57I	CTGAAG	3 cut(s)	546, 596, 1020
Eco88I	CYCGRG	1 cut(s)	587
EcoICRI	GAGCTC	2 cut(s)	27, 1033
EcoT14I	CCWWGG	3 cut(s)	195, 262, 327
EcoT38I	GRGCYC	3 cut(s)	29, 666, 1035
ErhI	CCWWGG	3 cut(s)	195, 262, 327
FaeI	CATG	5 cut(s)	172, 199, 266, 331, 517
FalI	AAGNNNNNCTT	6 cut(s)	455, 487, 879, 911, 1035, 1067
FaqI	GGGAC	1 cut(s)	856
FatI	CATG	5 cut(s)	168, 195, 262, 327, 513
FauI	CCCGC	1 cut(s)	657
FbaI	TGATCA	2 cut(s)	72, 106
Fnu4HI	GCNGC	2 cut(s)	906, 975
FriOI	GRGCYC	3 cut(s)	29, 666, 1035
Fsp4HI	GCNGC	2 cut(s)	906, 975
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	2 cut(s)	906, 975
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	5 cut(s)	172, 199, 266, 331, 517
HindIII	AAGCTT	2 cut(s)	215, 1044
HinfI	GANTC	8 cut(s)	134, 172, 200, 221, 272, 698, 708, 1065
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	2 cut(s)	70, 703
Hpy166II	GTNNAC	2 cut(s)	259, 877
Hpy188I	TCNGA	9 cut(s)	90, 106, 205, 301, 400, 576, 697, 815, 883
Hpy188III	TCNNGA	7 cut(s)	50, 76, 110, 283, 308, 659, 754
Hpy8I	GTNNAC	2 cut(s)	259, 877
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	5 cut(s)	51, 55, 332, 365, 734
HpyCH4III	ACNGT	3 cut(s)	82, 102, 720
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	231, 445, 724, 977
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	6 cut(s)	120, 143, 204, 543, 823, 880
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	5 cut(s)	172, 199, 266, 331, 517
Ksp22I	TGATCA	2 cut(s)	72, 106
Kzo9I	GATC	6 cut(s)	72, 106, 153, 366, 546, 579
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	14, 24
LpnPI	CCDG	7 cut(s)	35, 123, 164, 462, 672, 690, 710
Lsp1109I	GCAGC	1 cut(s)	961
LweI	GCATC	1 cut(s)	871
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	483, 991
MalI	GATC	6 cut(s)	74, 108, 155, 368, 548, 581
MboI	GATC	6 cut(s)	72, 106, 153, 366, 546, 579
MflI	RGATCY	2 cut(s)	153, 546
MhlI	GDGCHC	3 cut(s)	29, 666, 1035
MluCI	AATT	4 cut(s)	343, 630, 640, 936
MlyI	GAGTC	5 cut(s)	181, 215, 281, 702, 1059
MmeI	TCCRAC	1 cut(s)	793
MnlI	CCTC	8 cut(s)	84, 96, 202, 295, 477, 498, 583, 795
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	2 cut(s)	691, 908
MvnI	CGCG	1 cut(s)	652
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	22
NcoI	CCATGG	3 cut(s)	195, 262, 327
NdeII	GATC	6 cut(s)	72, 106, 153, 366, 546, 579
NlaIII	CATG	5 cut(s)	172, 199, 266, 331, 517
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	991
NspI	RCATGY	1 cut(s)	517
PciI	ACATGT	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PctI	GAATGC	2 cut(s)	691, 908
PfeI	GAWTC	3 cut(s)	134, 200, 698
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	907, 976
PleI	GAGTC	5 cut(s)	180, 215, 280, 702, 1059
PpsI	GAGTC	5 cut(s)	180, 215, 280, 702, 1059
PscI	ACATGT	1 cut(s)	513
PshAI	GACNNNNGTC	1 cut(s)	171
Psp124BI	GAGCTC	2 cut(s)	29, 1035
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	941
PsuI	RGATCY	2 cut(s)	153, 546
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	2 cut(s)	29, 1035
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	2 cut(s)	906, 975
Sau3AI	GATC	6 cut(s)	72, 106, 153, 366, 546, 579
Sau96I	GGNCC	1 cut(s)	941
SchI	GAGTC	5 cut(s)	181, 215, 281, 702, 1059
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	3 cut(s)	29, 666, 1035
SfaNI	GCATC	1 cut(s)	871
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	941
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	343, 630, 640, 936
SsiI	CCGC	4 cut(s)	566, 650, 689, 905
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	2 cut(s)	29, 1035
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	3 cut(s)	195, 262, 327
TaaI	ACNGT	3 cut(s)	82, 102, 720
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	369, 414, 454, 1035
TasI	AATT	4 cut(s)	343, 630, 640, 936
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	3 cut(s)	134, 200, 698
TseFI	GTSAC	1 cut(s)	991
TseI	GCWGC	1 cut(s)	974
Tsp45I	GTSAC	1 cut(s)	991
TspDTI	ATGAA	1 cut(s)	747
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	941
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	1 cut(s)	517
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.