Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

85805346 .. 85807886

Gene Structure 2541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGTTCTTATATATACGCAAGCGGTGAGATTAATCATCAATAAGAACTTGTTCTCTGAGTTTGGAGCAATGGAAGAATTAGCAAAGCTAGGGAGCTCTCTTCCGGTGCCTTGTGTTCAGGAGCTAGCGAAAGAGCCATTAACTACAGTCCCACACCGATATGTTCGCCCTGATCAAGATCCTCCCTTCATTTCTGGTATGGCCACTTCTTCACCTCAAGTACCAGTGATCGACATGAACAAGTTACTTTCAGAAGAAACCATGCCAGCAGAGTTGCAGGGGTTCCACCTTGCTTGCAAAGAATGGGGTTTCTTCCAGCTGATAAATCATGGAGTTGGTGAAACATTGTTGGTGAGTGTGAAGTCAGGGATTCAAGAATTCTTCAGTCTCCCAATGGAAGAGAAGAAACAGTTTTGGCAGCAGCCAGAAATTATGGAGGGTTTTGGACAAGCATTTGTTGTGTCTGAGAACCAGAAACTTGATTGGTCAGACATATTCTACTTGATCACACTCCCAAAACATTTGAGGAAGCCACATTTATTCCCCAATATTCCTCAACCACTAAGAGATGACTTAGAAGTGTACTCTGAGGAACTAGAAGATCTTGCCAAGAAGATTCTTGATCTCATGGCAAAAGCACTGGGAGTGGATGCTGACTATATAAAAGAGTTGTTTGACCAAGGGACTCAAATGGTTAGGATGAACTATTATCCACCATGTAAGCAACCAGAGCTTGTCATTGGCCTTAACCCTCACTCAGATCCTGTTGGATTGACTATCCTCCTCCAAGTGAATGAAATGGAAGGCCTTCAGGTTAGAAAAGATGGTATGTGGATTCCGATTAAACCCCTAAACAATGCTTTCGTCGTCAACGTTGGAGATATTTTGGAGATTGTGACGAATGGAATATACCGTAGCATTGAGCATCGGGCAACAGTGAACCATGAGAAGCAAAGGCTGTCAATAGCCACATTTTACAGTCCAAAATTGGAGGGAGAAATGGGTCCTGCTCCGAGCCTCATTACTCCAGAGAGACCAGCATTGTTGAAGAGAATAGATGTTGCAGACTACTTCAGGGGAGTTTTTGAACGCAAACTCGATGGGAAATCATACGTAGATGTCATGAGGATTCAACATGGTGAGGATGGCAAAGGCACCCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

388

Amino Acids

44.0

Weight (kDa)

5.21

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	74 - 182	1e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	229 - 328	3.2e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	106, 1154
AciI	CCGC	1 cut(s)	23
AclI	AACGTT	1 cut(s)	873
AclWI	GGATC	2 cut(s)	173, 755
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	3 cut(s)	367, 794, 1057
AfaI	GTAC	2 cut(s)	222, 584
AgsI	TTSAA	4 cut(s)	374, 1048, 1088, 1133
AluBI	AGCT	5 cut(s)	88, 96, 124, 319, 733
AluI	AGCT	5 cut(s)	88, 96, 124, 319, 733
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	2 cut(s)	392, 1027
AlwI	GGATC	2 cut(s)	173, 755
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	3 cut(s)	201, 742, 805
ApeKI	GCWGC	2 cut(s)	418, 421
ApoI	RAATTY	1 cut(s)	377
AseI	ATTAAT	1 cut(s)	32
Asp700I	GAANNNNTTC	2 cut(s)	50, 807
AspS9I	GGNCC	1 cut(s)	1004
AsuHPI	GGTGA	5 cut(s)	37, 204, 350, 364, 1151
AsuNHI	GCTAGC	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	1004
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	2 cut(s)	106, 1154
BanII	GRGCYC	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	430, 433
BccI	CCATC	3 cut(s)	818, 1094, 1139
BclI	TGATCA	2 cut(s)	172, 504
BcoDI	GTCTC	2 cut(s)	392, 1027
BfaI	CTAG	4 cut(s)	89, 125, 596, 1165
BfmI	CTRYAG	1 cut(s)	144
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	2 cut(s)	419, 422
BlsI	GCNGC	2 cut(s)	420, 423
Bme18I	GGWCC	1 cut(s)	1004
BmgT120I	GGNCC	1 cut(s)	1004
BmiI	GGNNCC	4 cut(s)	108, 284, 1005, 1156
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	2 cut(s)	640, 934
BmtI	GCTAGC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	650
BpmI	CTGGAG	1 cut(s)	1011
BpuEI	CTTGAG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	1114
BsaBI	GATNNNNATC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	1027
BsaJI	CCNNGG	1 cut(s)	679
BsaWI	WCCGGW	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	224, 645
Bse3DI	GCAATG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	3 cut(s)	655, 705, 1150
BseJI	GATNNNNATC	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	4 cut(s)	48, 456, 579, 771
BseNI	ACTGG	2 cut(s)	224, 645
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	2 cut(s)	430, 433
BshFI	GGCC	3 cut(s)	203, 744, 807
BshNI	GGYRCC	2 cut(s)	106, 1154
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	134, 697
BsmAI	GTCTC	2 cut(s)	392, 1027
BsmFI	GGGAC	2 cut(s)	134, 697
BsnI	GGCC	3 cut(s)	203, 744, 807
Bso31I	GGTCTC	1 cut(s)	1027
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	7 cut(s)	172, 178, 228, 504, 601, 622, 760
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	3 cut(s)	203, 744, 807
BspCNI	CTCAG	4 cut(s)	49, 457, 580, 770
BspHI	TCATGA	1 cut(s)	1122
BspLI	GGNNCC	4 cut(s)	108, 284, 1005, 1156
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	173, 755
BspT107I	GGYRCC	2 cut(s)	106, 1154
BspTNI	GGTCTC	1 cut(s)	1027
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	224, 645
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	7 cut(s)	172, 178, 228, 504, 601, 622, 760
BssT1I	CCWWGG	1 cut(s)	679
Bst4CI	ACNGT	5 cut(s)	148, 411, 914, 937, 980
Bst6I	CTCTTC	3 cut(s)	105, 393, 1043
BstBAI	YACGTR	1 cut(s)	1114
BstC8I	GCNNGC	4 cut(s)	21, 126, 267, 295
BstDEI	CTNAG	6 cut(s)	57, 465, 563, 574, 588, 757
BstF5I	GGATG	3 cut(s)	655, 705, 1150
BstKTI	GATC	7 cut(s)	175, 181, 231, 507, 604, 625, 763
BstMAI	GTCTC	2 cut(s)	392, 1027
BstMBI	GATC	7 cut(s)	172, 178, 228, 504, 601, 622, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstSFI	CTRYAG	1 cut(s)	144
BstSNI	TACGTA	1 cut(s)	1114
BstV1I	GCAGC	2 cut(s)	430, 433
BstX2I	RGATCY	3 cut(s)	178, 601, 760
BstYI	RGATCY	3 cut(s)	178, 601, 760
BsuRI	GGCC	3 cut(s)	203, 744, 807
BtsCI	GGATG	3 cut(s)	655, 705, 1150
BtsIMutI	CAGTG	3 cut(s)	231, 638, 942
Cac8I	GCNNGC	4 cut(s)	21, 126, 267, 295
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	1 cut(s)	1122
Cfr13I	GGNCC	1 cut(s)	1004
Csp6I	GTAC	2 cut(s)	221, 583
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	8 cut(s)	235, 262, 329, 628, 717, 944, 1123, 1136
CviQI	GTAC	2 cut(s)	221, 583
DdeI	CTNAG	6 cut(s)	57, 465, 563, 574, 588, 757
DpnI	GATC	7 cut(s)	174, 180, 230, 506, 603, 624, 762
DpnII	GATC	7 cut(s)	172, 178, 228, 504, 601, 622, 760
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	3 cut(s)	105, 393, 1043
EarI	CTCTTC	3 cut(s)	105, 393, 1043
Ecl136II	GAGCTC	1 cut(s)	96
Eco105I	TACGTA	1 cut(s)	1114
Eco130I	CCWWGG	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	807
Eco24I	GRGCYC	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	1027
Eco47I	GGWCC	1 cut(s)	1004
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	3 cut(s)	367, 794, 1057
EcoICRI	GAGCTC	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	1004
EcoRI	GAATTC	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	8 cut(s)	238, 265, 332, 631, 720, 947, 1126, 1139
FaqI	GGGAC	2 cut(s)	134, 697
FatI	CATG	8 cut(s)	234, 261, 328, 627, 716, 943, 1122, 1135
FbaI	TGATCA	2 cut(s)	172, 504
Fnu4HI	GCNGC	2 cut(s)	419, 422
FokI	GGATG	3 cut(s)	662, 712, 1157
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	419, 422
FspBI	CTAG	4 cut(s)	89, 125, 596, 1165
GluI	GCNGC	2 cut(s)	419, 422
GsuI	CTGGAG	1 cut(s)	1011
HaeIII	GGCC	3 cut(s)	203, 744, 807
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	8 cut(s)	238, 265, 332, 631, 720, 947, 1126, 1139
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HinfI	GANTC	5 cut(s)	370, 616, 685, 835, 1129
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	5 cut(s)	37, 204, 350, 364, 1151
Hpy166II	GTNNAC	3 cut(s)	583, 871, 940
Hpy188I	TCNGA	8 cut(s)	58, 253, 466, 490, 589, 760, 840, 1014
Hpy188III	TCNNGA	6 cut(s)	119, 176, 374, 620, 1028, 1123
Hpy8I	GTNNAC	3 cut(s)	583, 871, 940
Hpy99I	CGWCG	1 cut(s)	869
HpyAV	CCTTC	3 cut(s)	196, 797, 818
HpyCH4III	ACNGT	5 cut(s)	148, 411, 914, 937, 980
HpyCH4IV	ACGT	2 cut(s)	873, 1113
HpyCH4V	TGCA	3 cut(s)	277, 297, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	6 cut(s)	57, 465, 563, 574, 588, 757
HpySE526I	ACGT	2 cut(s)	873, 1113
Hsp92II	CATG	8 cut(s)	238, 265, 332, 631, 720, 947, 1126, 1139
Ksp22I	TGATCA	2 cut(s)	172, 504
Kzo9I	GATC	7 cut(s)	172, 178, 228, 504, 601, 622, 760
LmnI	GCTCC	4 cut(s)	65, 93, 121, 1015
Lsp1109I	GCAGC	2 cut(s)	430, 433
LweI	GCATC	2 cut(s)	640, 934
MaeI	CTAG	4 cut(s)	89, 125, 596, 1165
MaeII	ACGT	2 cut(s)	873, 1113
MaeIII	GTNAC	2 cut(s)	243, 895
MalI	GATC	7 cut(s)	174, 180, 230, 506, 603, 624, 762
MboI	GATC	7 cut(s)	172, 178, 228, 504, 601, 622, 760
MflI	RGATCY	3 cut(s)	178, 601, 760
MhlI	GDGCHC	1 cut(s)	98
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	4 cut(s)	77, 377, 429, 986
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	2 cut(s)	748, 856
Mox20I	TGGCCA	1 cut(s)	203
MroXI	GAANNNNTTC	2 cut(s)	50, 807
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	4 cut(s)	32, 140, 747, 843
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	730
NdeII	GATC	7 cut(s)	172, 178, 228, 504, 601, 622, 760
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	8 cut(s)	238, 265, 332, 631, 720, 947, 1126, 1139
NlaIV	GGNNCC	4 cut(s)	108, 284, 1005, 1156
NmuCI	GTSAC	1 cut(s)	895
PagI	TCATGA	1 cut(s)	1122
PceI	AGGCCT	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	1 cut(s)	870
PdmI	GAANNNNTTC	2 cut(s)	50, 807
PfeI	GAWTC	4 cut(s)	370, 616, 835, 1129
PkrI	GCNGC	2 cut(s)	420, 423
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
Ppu21I	YACGTR	1 cut(s)	1114
PpuMI	RGGWCCY	1 cut(s)	1004
PshBI	ATTAAT	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	98
Psp1406I	AACGTT	1 cut(s)	873
Psp5II	RGGWCCY	1 cut(s)	1004
PspN4I	GGNNCC	4 cut(s)	108, 284, 1005, 1156
PspPI	GGNCC	1 cut(s)	1004
PspPPI	RGGWCCY	1 cut(s)	1004
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	3 cut(s)	178, 601, 760
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	222, 584
RsaNI	GTAC	2 cut(s)	221, 583
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	4 cut(s)	32, 140, 747, 843
SatI	GCNGC	2 cut(s)	419, 422
Sau3AI	GATC	7 cut(s)	172, 178, 228, 504, 601, 622, 760
Sau96I	GGNCC	1 cut(s)	1004
SchI	GAGTC	1 cut(s)	679
SduI	GDGCHC	1 cut(s)	98
SfaNI	GCATC	2 cut(s)	640, 934
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	1004
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
SnaBI	TACGTA	1 cut(s)	1114
Sse9I	AATT	4 cut(s)	77, 377, 429, 986
SseBI	AGGCCT	1 cut(s)	807
SsiI	CCGC	1 cut(s)	23
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	4 cut(s)	89, 125, 596, 1165
SstI	GAGCTC	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	807
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	5 cut(s)	148, 411, 914, 937, 980
TaiI	ACGT	2 cut(s)	876, 1116
TaqI	TCGA	2 cut(s)	231, 1098
TasI	AATT	4 cut(s)	77, 377, 429, 986
TatI	WGTACW	1 cut(s)	582
TfiI	GAWTC	4 cut(s)	370, 616, 835, 1129
Tru1I	TTAA	4 cut(s)	32, 140, 747, 843
Tru9I	TTAA	4 cut(s)	32, 140, 747, 843
TscAI	CASTG	3 cut(s)	231, 645, 942
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	2 cut(s)	418, 421
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	4 cut(s)	178, 251, 716, 810
TspRI	CASTG	3 cut(s)	231, 645, 942
VpaK11BI	GGWCC	1 cut(s)	1004
VspI	ATTAAT	1 cut(s)	32
XapI	RAATTY	1 cut(s)	377
XmnI	GAANNNNTTC	2 cut(s)	50, 807
XspI	CTAG	4 cut(s)	89, 125, 596, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.