Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

38776164 .. 38777607

Gene Structure 1444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1272300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAGAAAAGGCATTTGCAGGGAAGAGCTTGTACGGTGGTTCTCTTCCTGTTCCTAGTGTTCAAGAATTAGTACAGAAGCCAATACTCACAATCCCACCCAGATACATACAGCCTCATCATCAAGAGATCATTTGTTCTGATCATCATGCTCATCAAATACCATCCATTGACATGCAGAAATTGCTTTCCCAAGAATCAACCATTTCTGAATCTGAACTAGCCAGGCTCCATTTTGCTTGCCAAGAGTGGGGTTTCTTTCAGTTGGTAAACCATGGTGTGAGCTCTTCCTTGTTGGAGAAAATGAAGACAGAAACTCAAGAGTTCTTCAACCTGCCCATGGAAGAGAAGAAAAAATTTTCGCAACAGCCAGGAGATATTGAAGGTTTTGGACAATCCTTTGTAGTTTCTGAAGACCAAAAACTCGATTGGGCTGACACTTTCGTCTTGACCACCCTACCTGTCCAACTGAGGAGGCCCCACCTACTCCCAAAACTCCCTTCTCCTTTCAGGTCCTCTCGTGATTCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

178

Amino Acids

20.2

Weight (kDa)

6.05

Isoelectric Point (pI)

63.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	54 - 164	1.6e-31	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	35, 75
AfiI	CCNNNNNNNGG	2 cut(s)	250, 340
AgsI	TTSAA	3 cut(s)	65, 331, 383
AjnI	CCWGG	2 cut(s)	224, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	2 cut(s)	30, 285
AluI	AGCT	2 cut(s)	30, 285
Alw21I	GWGCWC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	477, 513
AvaII	GGWCC	1 cut(s)	513
BanII	GRGCYC	1 cut(s)	287
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	2 cut(s)	314, 420
Bbv12I	GWGCWC	1 cut(s)	287
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	226, 372
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	2 cut(s)	57, 221
BfuAI	ACCTGC	1 cut(s)	342
Bme1390I	CCNGG	2 cut(s)	226, 372
Bme18I	GGWCC	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	477, 513
BmiI	GGNNCC	2 cut(s)	230, 479
BmrFI	CCNGG	2 cut(s)	226, 372
BpiI	GAAGAC	2 cut(s)	314, 420
BpuEI	CTTGAG	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	274, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 340
BseBI	CCWGG	2 cut(s)	226, 372
BseDI	CCNNGG	2 cut(s)	274, 339
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	250, 340
BseMII	CTCAG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	487
BshFI	GGCC	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	250, 340
BsnI	GGCC	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	129, 142
Bsp19I	CCATGG	2 cut(s)	274, 339
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	230, 479
BspMI	ACCTGC	1 cut(s)	342
BspQI	GCTCTTC	2 cut(s)	20, 292
BssECI	CCNNGG	2 cut(s)	274, 339
BssMI	GATC	2 cut(s)	129, 142
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	2 cut(s)	274, 339
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	226, 372
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	4 cut(s)	20, 51, 292, 339
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	470
BstDSI	CCRYGG	2 cut(s)	274, 339
BstF5I	GGATG	1 cut(s)	164
BstKTI	GATC	2 cut(s)	132, 145
BstMBI	GATC	2 cut(s)	129, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	2 cut(s)	226, 372
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	224, 370
BstV2I	GAAGAC	2 cut(s)	314, 420
BsuRI	GGCC	1 cut(s)	478
BtgI	CCRYGG	2 cut(s)	274, 339
BtsCI	GGATG	1 cut(s)	164
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	477, 513
Csp6I	GTAC	2 cut(s)	34, 74
CviAII	CATG	4 cut(s)	149, 175, 275, 340
CviJI	RGCY	9 cut(s)	30, 82, 115, 224, 229, 285, 370, 434, 478
CviKI_1	RGCY	9 cut(s)	30, 82, 115, 224, 229, 285, 370, 434, 478
CviQI	GTAC	2 cut(s)	34, 74
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	2 cut(s)	131, 144
DpnII	GATC	2 cut(s)	129, 142
DrdI	GACNNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	4 cut(s)	20, 51, 292, 339
EarI	CTCTTC	4 cut(s)	20, 51, 292, 339
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	274, 339
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	285
EcoO109I	RGGNCCY	2 cut(s)	477, 513
EcoRII	CCWGG	2 cut(s)	224, 370
EcoT14I	CCWWGG	2 cut(s)	274, 339
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	274, 339
FaeI	CATG	4 cut(s)	152, 178, 278, 343
FaiI	YATR	5 cut(s)	110, 150, 176, 276, 341
FatI	CATG	4 cut(s)	148, 174, 274, 339
FbaI	TGATCA	1 cut(s)	142
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	287
FspBI	CTAG	2 cut(s)	57, 221
HaeIII	GGCC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	152, 178, 278, 343
HinfI	GANTC	3 cut(s)	197, 212, 524
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	142, 211, 217, 412
Hpy188III	TCNNGA	5 cut(s)	65, 125, 320, 448, 521
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	377, 510
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	20, 178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	1 cut(s)	470
Hsp92II	CATG	4 cut(s)	152, 178, 278, 343
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	129, 142
LguI	GCTCTTC	2 cut(s)	20, 292
LmnI	GCTCC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	57, 221
MalI	GATC	2 cut(s)	131, 144
MboI	GATC	2 cut(s)	129, 142
MboII	GAAGA	9 cut(s)	17, 37, 38, 279, 319, 319, 356, 361, 425
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	3 cut(s)	68, 182, 356
MmeI	TCCRAC	2 cut(s)	276, 490
MnlI	CCTC	4 cut(s)	126, 465, 468, 526
MslI	CAYNNNNRTG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	226, 372
MvaI	CCWGG	2 cut(s)	226, 372
MwoI	GCNNNNNNNGC	1 cut(s)	184
NcoI	CCATGG	2 cut(s)	274, 339
NdeII	GATC	2 cut(s)	129, 142
NlaIII	CATG	4 cut(s)	152, 178, 278, 343
NlaIV	GGNNCC	2 cut(s)	230, 479
NspI	RCATGY	1 cut(s)	178
PciSI	GCTCTTC	2 cut(s)	20, 292
PfeI	GAWTC	3 cut(s)	197, 212, 524
PpuMI	RGGWCCY	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	224, 370
PspGI	CCWGG	2 cut(s)	224, 370
PspN4I	GGNNCC	2 cut(s)	230, 479
PspPI	GGNCC	2 cut(s)	477, 513
PspPPI	RGGWCCY	1 cut(s)	513
RsaI	GTAC	2 cut(s)	35, 75
RsaNI	GTAC	2 cut(s)	34, 74
RseI	CAYNNNNRTG	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	287
SapI	GCTCTTC	2 cut(s)	20, 292
Sau3AI	GATC	2 cut(s)	129, 142
Sau96I	GGNCC	2 cut(s)	477, 513
ScrFI	CCNGG	2 cut(s)	226, 372
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	7 cut(s)	32, 287, 336, 388, 463, 486, 515
SinI	GGWCC	1 cut(s)	513
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	3 cut(s)	68, 182, 356
SspMI	CTAG	2 cut(s)	57, 221
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	224, 370
StyI	CCWWGG	2 cut(s)	274, 339
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	426
TasI	AATT	3 cut(s)	68, 182, 356
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	197, 212, 524
TspDTI	ATGAA	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	513
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	2 cut(s)	57, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.