Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

71414143 .. 71424506

Gene Structure 10364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGAAAAAGGAAGATAGCAGCAGCTGGGTGTATGGTGGTTCTCATCTTGTTCCTTGTGTTCAAGAATTAGCTAAAAATCCCATAACAACCATCCCACCGAGATACCTACAGCAAGATTACAATGATGGTGATGCTCAAGACCAACTGAACAAGATCAATACCGATGGGACGCGCAGTTCTGTACAACCTGAAATACCATTCATTGACTTCATGAAACTGCTCTCCCAGCAAGAATCAGACAATTTTGATGAACTATCTAGGCTCCACTTAGCTTGCAAAGAGTGGGGTTTCTTCCAGCTGGTAAACCATGGTGTGAGCTCTTCTTTGATGGAGAAAATGAAGACAGAAATTCAAGACTTCTTCAACCTCCCGATAGAAGAGAAGAAAAGGTTTTGGCAGCACCCAGGAGACGTTGAGGGTTTTGGACAGGCCTTTGTCGTTTCTGAAGAGCAAAAACTTGATTGGGCTGACATTTTCTTCCTCACCACCCTTCCTGTCCAGATGAGGAAGCCTCACTTATTCCCGGAGCTCCCTACTCCTTTCAAAGACACCTTGGAGATTTACTCAATGGAATTGGAAAACCTAGCCATGGCTATCCTAACCCAAATGGAAAATGCTTTAAAAATTGAAGCCAAGGAATTGACCAAGTCGTTTGTAGGTGGAATGCAATCCATGAGGATGAACTATTATCCTCCATGTCCACAGCCGGAGAAAGTCATCGGCCTTACTCCTCATTCGGACGCCGTAGGTCTAACCATCCTCCTGCAAGTCAATGAAATATTGGAAGGTCTCCAAGTCAAGAAGGATGGGATATGGTTTCCTGTTAAGCCACTTCCAGATGCCTTCATTGTCAACGTCGGAGACATTTTAGAGATTCAAACAAATGGAACTTATCGTAGCATCGAGCATCGAGCAATTGTCAACACCAAAAAAGAAAGACTGTCAATCGCGACATTTTACAGCCCAAGACTTGATGGCGAAATTTGTCCAGCACCTAGCTTGATCACTGAAGAAACACATGCTGCATATACAAGCATCGGAGTGCAAGATTTCTTCACAGCCTTATTTGCACGTAAGCTTCAAGGAAAATCTTTTCTCGATGATCTTAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

372

Amino Acids

42.37

Weight (kDa)

5.0

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	66 - 177	1.8e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	224 - 323	2.9e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1117
AccII	CGCG	2 cut(s)	175, 953
AcsI	RAATTY	2 cut(s)	351, 984
AcuI	CTGAAG	2 cut(s)	468, 1032
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	592
AgsI	TTSAA	7 cut(s)	65, 356, 367, 547, 632, 881, 1085
AjnI	CCWGG	1 cut(s)	406
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
AluBI	AGCT	8 cut(s)	27, 74, 275, 301, 321, 532, 1002, 1081
AluI	AGCT	8 cut(s)	27, 74, 275, 301, 321, 532, 1002, 1081
Alw21I	GWGCWC	2 cut(s)	323, 534
Alw26I	GTCTC	3 cut(s)	405, 797, 858
AlwNI	CAGNNNCTG	1 cut(s)	27
AoxI	GGCC	2 cut(s)	432, 724
ApeKI	GCWGC	4 cut(s)	21, 24, 400, 1025
ApoI	RAATTY	2 cut(s)	351, 984
AspLEI	GCGC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	143, 478
BanII	GRGCYC	2 cut(s)	323, 534
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	323, 534
BbvI	GCAGC	4 cut(s)	33, 36, 412, 1012
BccI	CCATC	7 cut(s)	101, 122, 161, 325, 767, 803, 971
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	1 cut(s)	1005
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	3 cut(s)	405, 797, 858
BfaI	CTAG	3 cut(s)	261, 587, 999
BfmI	CTRYAG	1 cut(s)	110
BisI	GCNGC	4 cut(s)	22, 25, 401, 1026
BlsI	GCNGC	4 cut(s)	23, 26, 402, 1027
Bme1390I	CCNGG	2 cut(s)	408, 527
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	408, 527
BmsI	GCATC	5 cut(s)	124, 832, 912, 919, 1047
BpiI	GAAGAC	1 cut(s)	350
BplI	GAGNNNNNCTC	4 cut(s)	499, 531, 551, 583
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	1076
BsaHI	GRCGYC	1 cut(s)	744
BsaI	GGTCTC	1 cut(s)	797
BsaJI	CCNNGG	5 cut(s)	310, 406, 555, 591, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	5 cut(s)	310, 406, 555, 591, 636
BseGI	GGATG	4 cut(s)	93, 687, 759, 814
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	4 cut(s)	33, 36, 412, 1012
BseYI	CCCAGC	2 cut(s)	27, 228
Bsh1236I	CGCG	2 cut(s)	175, 953
BshFI	GGCC	2 cut(s)	434, 726
BsiHKAI	GWGCWC	2 cut(s)	323, 534
BsiSI	CCGG	2 cut(s)	527, 710
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmAI	GTCTC	3 cut(s)	405, 797, 858
BsmBI	CGTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	2 cut(s)	434, 726
Bso31I	GGTCTC	1 cut(s)	797
Bsp1286I	GDGCHC	2 cut(s)	323, 534
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	156, 1005, 1105
Bsp19I	CCATGG	2 cut(s)	310, 591
Bsp68I	TCGCGA	1 cut(s)	953
BspANI	GGCC	2 cut(s)	434, 726
BspFNI	CGCG	2 cut(s)	175, 953
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	266
BspQI	GCTCTTC	2 cut(s)	328, 444
BspTNI	GGTCTC	1 cut(s)	797
BsrGI	TGTACA	1 cut(s)	184
BssECI	CCNNGG	5 cut(s)	310, 406, 555, 591, 636
BssMI	GATC	3 cut(s)	156, 1005, 1105
BssNI	GRCGYC	1 cut(s)	744
BssT1I	CCWWGG	4 cut(s)	310, 555, 591, 636
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	945
Bst6I	CTCTTC	3 cut(s)	328, 375, 444
BstACI	GRCGYC	1 cut(s)	744
BstAUI	TGTACA	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	1076
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	271, 1109
BstDSI	CCRYGG	2 cut(s)	310, 591
BstF5I	GGATG	4 cut(s)	93, 687, 759, 814
BstFNI	CGCG	2 cut(s)	175, 953
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	159, 1008, 1108
BstMAI	GTCTC	3 cut(s)	405, 797, 858
BstMBI	GATC	3 cut(s)	156, 1005, 1105
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 1070
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	1025
BstSCI	CCNGG	2 cut(s)	406, 525
BstSFI	CTRYAG	1 cut(s)	110
BstUI	CGCG	2 cut(s)	175, 953
BstV1I	GCAGC	4 cut(s)	33, 36, 412, 1012
BstV2I	GAAGAC	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	434, 726
BtgI	CCRYGG	2 cut(s)	310, 591
BtsCI	GGATG	4 cut(s)	93, 687, 759, 814
BtsIMutI	CAGTG	1 cut(s)	1008
BtuMI	TCGCGA	1 cut(s)	953
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	27
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	177
CseI	GACGC	2 cut(s)	181, 752
Csp6I	GTAC	1 cut(s)	185
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviAII	CATG	6 cut(s)	214, 311, 592, 676, 699, 1022
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	2 cut(s)	271, 1109
DpnI	GATC	3 cut(s)	158, 1007, 1107
DpnII	GATC	3 cut(s)	156, 1005, 1105
DraI	TTTAAA	1 cut(s)	624
Eam1104I	CTCTTC	3 cut(s)	328, 375, 444
EarI	CTCTTC	3 cut(s)	328, 375, 444
Ecl136II	GAGCTC	2 cut(s)	321, 532
Eco130I	CCWWGG	4 cut(s)	310, 555, 591, 636
Eco147I	AGGCCT	1 cut(s)	434
Eco24I	GRGCYC	2 cut(s)	323, 534
Eco31I	GGTCTC	1 cut(s)	797
Eco53kI	GAGCTC	2 cut(s)	321, 532
Eco57I	CTGAAG	2 cut(s)	468, 1032
EcoICRI	GAGCTC	2 cut(s)	321, 532
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	4 cut(s)	310, 555, 591, 636
EcoT38I	GRGCYC	2 cut(s)	323, 534
ErhI	CCWWGG	4 cut(s)	310, 555, 591, 636
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	6 cut(s)	217, 314, 595, 679, 702, 1025
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	6 cut(s)	213, 310, 591, 675, 698, 1021
FbaI	TGATCA	1 cut(s)	1005
Fnu4HI	GCNGC	4 cut(s)	22, 25, 401, 1026
FokI	GGATG	4 cut(s)	80, 694, 746, 821
FriOI	GRGCYC	2 cut(s)	323, 534
Fsp4HI	GCNGC	4 cut(s)	22, 25, 401, 1026
FspBI	CTAG	3 cut(s)	261, 587, 999
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	4 cut(s)	22, 25, 401, 1026
GsaI	CCCAGC	2 cut(s)	31, 232
HaeIII	GGCC	2 cut(s)	434, 726
HapII	CCGG	2 cut(s)	527, 710
HgaI	GACGC	2 cut(s)	181, 752
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	6 cut(s)	217, 314, 595, 679, 702, 1025
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	2 cut(s)	856, 925
HindII	GTYRAC	2 cut(s)	856, 925
HindIII	AAGCTT	1 cut(s)	1079
HinfI	GANTC	2 cut(s)	236, 877
HpaII	CCGG	2 cut(s)	527, 710
HphI	GGTGA	2 cut(s)	143, 478
Hpy166II	GTNNAC	4 cut(s)	307, 704, 856, 925
Hpy188I	TCNGA	5 cut(s)	241, 448, 742, 863, 1043
Hpy8I	GTNNAC	4 cut(s)	307, 704, 856, 925
Hpy99I	CGWCG	1 cut(s)	863
HpyAV	CCTTC	4 cut(s)	503, 782, 799, 856
HpyCH4III	ACNGT	1 cut(s)	945
HpyCH4IV	ACGT	3 cut(s)	414, 858, 1075
HpyCH4V	TGCA	6 cut(s)	279, 670, 769, 1028, 1048, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 1070
HpyF3I	CTNAG	2 cut(s)	271, 1109
HpySE526I	ACGT	3 cut(s)	414, 858, 1075
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	6 cut(s)	217, 314, 595, 679, 702, 1025
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	1005
Kzo9I	GATC	3 cut(s)	156, 1005, 1105
LguI	GCTCTTC	2 cut(s)	328, 444
LmnI	GCTCC	3 cut(s)	270, 529, 537
Lsp1109I	GCAGC	4 cut(s)	33, 36, 412, 1012
LweI	GCATC	5 cut(s)	124, 832, 912, 919, 1047
MaeI	CTAG	3 cut(s)	261, 587, 999
MaeII	ACGT	3 cut(s)	414, 858, 1075
MalI	GATC	3 cut(s)	158, 1007, 1107
MboI	GATC	3 cut(s)	156, 1005, 1105
MfeI	CAATTG	1 cut(s)	918
MhlI	GDGCHC	2 cut(s)	323, 534
MluCI	AATT	8 cut(s)	68, 244, 351, 575, 627, 641, 918, 984
MmeI	TCCRAC	1 cut(s)	841
MnlI	CCTC	9 cut(s)	380, 412, 494, 501, 525, 672, 705, 744, 773
MseI	TTAA	2 cut(s)	623, 828
MslI	CAYNNNNRTG	2 cut(s)	680, 1043
MspA1I	CMGCKG	2 cut(s)	27, 301
MspI	CCGG	2 cut(s)	527, 710
MspR9I	CCNGG	2 cut(s)	408, 527
MunI	CAATTG	1 cut(s)	918
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	2 cut(s)	175, 953
MwoI	GCNNNNNNNGC	2 cut(s)	229, 1070
NciI	CCSGG	1 cut(s)	527
NcoI	CCATGG	2 cut(s)	310, 591
NdeII	GATC	3 cut(s)	156, 1005, 1105
NlaIII	CATG	6 cut(s)	217, 314, 595, 679, 702, 1025
NlaIV	GGNNCC	1 cut(s)	266
NruI	TCGCGA	1 cut(s)	953
NspI	RCATGY	1 cut(s)	1025
PagI	TCATGA	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	2 cut(s)	328, 444
PctI	GAATGC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	236, 877
PflFI	GACNNNGTC	1 cut(s)	649
PfoI	TCCNGGA	1 cut(s)	525
PkrI	GCNGC	4 cut(s)	23, 26, 402, 1027
Ppu21I	YACGTR	1 cut(s)	1076
PsiI	TTATAA	1 cut(s)	1117
Psp124BI	GAGCTC	2 cut(s)	323, 534
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	2 cut(s)	27, 228
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	649
PvuII	CAGCTG	2 cut(s)	27, 301
RruI	TCGCGA	1 cut(s)	953
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	2 cut(s)	680, 1043
SacI	GAGCTC	2 cut(s)	323, 534
SapI	GCTCTTC	2 cut(s)	328, 444
SaqAI	TTAA	2 cut(s)	623, 828
SatI	GCNGC	4 cut(s)	22, 25, 401, 1026
Sau3AI	GATC	3 cut(s)	156, 1005, 1105
ScrFI	CCNGG	2 cut(s)	408, 527
SduI	GDGCHC	2 cut(s)	323, 534
SfaNI	GCATC	5 cut(s)	124, 832, 912, 919, 1047
SfcI	CTRYAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	680, 1043
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	8 cut(s)	68, 244, 351, 575, 627, 641, 918, 984
SseBI	AGGCCT	1 cut(s)	434
SspI	AATATT	1 cut(s)	783
SspMI	CTAG	3 cut(s)	261, 587, 999
SstI	GAGCTC	2 cut(s)	323, 534
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	406, 525
StyI	CCWWGG	4 cut(s)	310, 555, 591, 636
TaaI	ACNGT	1 cut(s)	945
TaiI	ACGT	3 cut(s)	417, 861, 1078
TaqI	TCGA	3 cut(s)	906, 913, 1101
TasI	AATT	8 cut(s)	68, 244, 351, 575, 627, 641, 918, 984
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	236, 877
Tru1I	TTAA	2 cut(s)	623, 828
Tru9I	TTAA	2 cut(s)	623, 828
TscAI	CASTG	1 cut(s)	1015
TseI	GCWGC	4 cut(s)	21, 24, 400, 1025
TspDTI	ATGAA	8 cut(s)	193, 202, 230, 267, 356, 698, 792, 838
TspRI	CASTG	1 cut(s)	1015
Tth111I	GACNNNGTC	1 cut(s)	649
XapI	RAATTY	2 cut(s)	351, 984
XceI	RCATGY	1 cut(s)	1025
XspI	CTAG	3 cut(s)	261, 587, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.