Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

12949664 .. 12951937

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAAGGTAAAGGAGTAACCTTTAGTTCTGTTATAGTTCCTTCTGTTCAAGAGATGGTGAAGGAGAAGGTGATCACAACGGTACTTCCTCCGAGGTATGTGCGGTCTGATCAAGAAAAAGGCGAGGCAGCCATTGATTCTGGTGAAAACCAAATCCCAATCATAGACATGAGTCTTTTGTCTTCTTCAACCTCCATGGATTCTGAGATTGACAAACTCGACTTTGCTTGCAAAGAATGGGGATTTTTCCAGCTTGTAAACCATGGAATGGACTTGGACAAATTCAAGTCCGATATTCAAGATTTCTTCAACCTTCCCATGGAAGAGAAGAAGAAGCTGTGGCAACAACCCGGTGATATCGAAGGGTTTGGACAAGCTTTTGTGTTTTCAGAAGAGCAGAAACTCGATTGGGCTGACGTTTTCTTCCTTACAATGCAACCTGTTCCATTACGCAAACCTCACTTGTTTCCCAAGTTACCTCTTCCCTTCAGAGATACACTGGATACGTATTCGGCTGAACTGAAAAGCATAGCTAAGGTCTTATTCGCGAAACTAGCGAGTGCACTCAAAATCAAACCTGAGGAAATGGAAAAGTTGTTTGATGATGAGTTAGGTCAGAGAATTAGGATGAATTACTACCCGCCTTGTCCGGAGCCCGATAAGGCTATTGGTCTAACTCCACATTCCGATGCTACAGGACTCACCATACTGTTGCAGGTTAATGAAGTTGAAGGTCTCCAAATCAAGAAAGATGGCAAGTGGGTTTCTGTCAAACCTCTCCCAAATGCTTTAGTTGTCAATGTTGGAGACATCTTAGAGATCATAACGAATGGGACATACCGAAGTATAGAGCATCGTGGAGTTGTAAACTCAGAGAAAGAGAGGCTTTCTGTGGCGTCATTCCATAATACGGGGTTCGGTAAAGAAATTGGTCCGATGAGAAGTCTCGTGGAAAGGCACAAGGGTGCACTTTTCAAAACCCTGACCACTGAAGAGTATTTCCATGGCTTGTTTTCCCGTGAGCTCGATGGAAAAGCTTACCTTGATGTTATGAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

353

Amino Acids

39.93

Weight (kDa)

5.36

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	52 - 157	6.1e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	201 - 275	1.9e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	706
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccII	CGCG	1 cut(s)	548
AccIII	TCCGGA	1 cut(s)	649
AciI	CCGC	2 cut(s)	103, 641
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	2 cut(s)	472, 1011
AcyI	GRCGYC	1 cut(s)	896
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	268, 319, 910
AgsI	TTSAA	7 cut(s)	50, 189, 286, 299, 310, 731, 976
AleI	CACNNNNGTG	1 cut(s)	963
AluBI	AGCT	6 cut(s)	253, 337, 377, 533, 1024, 1037
AluI	AGCT	6 cut(s)	253, 337, 377, 533, 1024, 1037
Alw21I	GWGCWC	3 cut(s)	565, 970, 1026
Alw26I	GTCTC	3 cut(s)	740, 801, 950
Alw44I	GTGCAC	2 cut(s)	561, 966
Aor13HI	TCCGGA	1 cut(s)	649
ApaLI	GTGCAC	2 cut(s)	561, 966
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	932
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	5 cut(s)	70, 82, 155, 365, 694
AvaII	GGWCC	1 cut(s)	932
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	2 cut(s)	565, 970
BanII	GRGCYC	2 cut(s)	657, 1026
BauI	CACGAG	1 cut(s)	947
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	3 cut(s)	565, 970, 1026
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	3 cut(s)	49, 746, 1022
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	2 cut(s)	72, 109
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	3 cut(s)	740, 801, 950
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	693
BfuAI	ACCTGC	1 cut(s)	706
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	932
BmgT120I	GGNCC	1 cut(s)	932
BmiI	GGNNCC	1 cut(s)	654
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	2 cut(s)	679, 862
BoxI	GACNNNNGTC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	896
BsaI	GGTCTC	1 cut(s)	740
BsaJI	CCNNGG	5 cut(s)	92, 195, 262, 318, 1003
BsaWI	WCCGGW	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 319, 910
Bse1I	ACTGG	1 cut(s)	504
Bse21I	CCTNAGG	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	649
BseDI	CCNNGG	5 cut(s)	92, 195, 262, 318, 1003
BseGI	GGATG	1 cut(s)	633
BseLI	CCNNNNNNNGG	3 cut(s)	268, 319, 910
BseMII	CTCAG	3 cut(s)	195, 570, 885
BseNI	ACTGG	1 cut(s)	504
BseSI	GKGCMC	2 cut(s)	565, 970
BseXI	GCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	548
BsiHKAI	GWGCWC	3 cut(s)	565, 970, 1026
BsiSI	CCGG	2 cut(s)	351, 650
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	3 cut(s)	268, 319, 910
BsmAI	GTCTC	3 cut(s)	740, 801, 950
BsmFI	GGGAC	1 cut(s)	847
Bso31I	GGTCTC	1 cut(s)	740
Bsp1286I	GDGCHC	4 cut(s)	565, 657, 970, 1026
Bsp13I	TCCGGA	1 cut(s)	649
Bsp143I	GATC	3 cut(s)	72, 109, 819
Bsp19I	CCATGG	4 cut(s)	195, 262, 318, 1003
Bsp68I	TCGCGA	1 cut(s)	548
BspACI	CCGC	2 cut(s)	103, 641
BspCNI	CTCAG	3 cut(s)	196, 571, 884
BspEI	TCCGGA	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	706
BspQI	GCTCTTC	1 cut(s)	387
BspTNI	GGTCTC	1 cut(s)	740
BsrI	ACTGG	1 cut(s)	504
BssECI	CCNNGG	5 cut(s)	92, 195, 262, 318, 1003
BssMI	GATC	3 cut(s)	72, 109, 819
BssNI	GRCGYC	1 cut(s)	896
BssSI	CACGAG	1 cut(s)	947
BssT1I	CCWWGG	4 cut(s)	195, 262, 318, 1003
Bst2BI	CACGAG	1 cut(s)	947
Bst4CI	ACNGT	2 cut(s)	82, 711
Bst6I	CTCTTC	4 cut(s)	318, 387, 486, 987
BstACI	GRCGYC	1 cut(s)	896
BstBAI	YACGTR	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	5 cut(s)	204, 534, 579, 814, 871
BstDSI	CCRYGG	4 cut(s)	195, 262, 318, 1003
BstF5I	GGATG	1 cut(s)	633
BstFNI	CGCG	1 cut(s)	548
BstKTI	GATC	3 cut(s)	75, 112, 822
BstMAI	GTCTC	3 cut(s)	740, 801, 950
BstMBI	GATC	3 cut(s)	72, 109, 819
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstPAI	GACNNNNGTC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	2 cut(s)	565, 970
BstSNI	TACGTA	1 cut(s)	507
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	174
Bsu36I	CCTNAGG	1 cut(s)	579
BsuI	GTATCC	1 cut(s)	496
BtgI	CCRYGG	4 cut(s)	195, 262, 318, 1003
BtsCI	GGATG	1 cut(s)	633
BtsIMutI	CAGTG	2 cut(s)	497, 987
BtuMI	TCGCGA	1 cut(s)	548
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	932
CseI	GACGC	1 cut(s)	885
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	5 cut(s)	169, 196, 263, 319, 1004
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	5 cut(s)	204, 534, 579, 814, 871
DpnI	GATC	3 cut(s)	74, 111, 821
DpnII	GATC	3 cut(s)	72, 109, 819
Eam1104I	CTCTTC	4 cut(s)	318, 387, 486, 987
EarI	CTCTTC	4 cut(s)	318, 387, 486, 987
Ecl136II	GAGCTC	1 cut(s)	1024
Eco105I	TACGTA	1 cut(s)	507
Eco130I	CCWWGG	4 cut(s)	195, 262, 318, 1003
Eco24I	GRGCYC	2 cut(s)	657, 1026
Eco31I	GGTCTC	1 cut(s)	740
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	932
Eco53kI	GAGCTC	1 cut(s)	1024
Eco57I	CTGAAG	2 cut(s)	472, 1011
Eco81I	CCTNAGG	1 cut(s)	579
EcoICRI	GAGCTC	1 cut(s)	1024
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	4 cut(s)	195, 262, 318, 1003
EcoT38I	GRGCYC	2 cut(s)	657, 1026
ErhI	CCWWGG	4 cut(s)	195, 262, 318, 1003
FaeI	CATG	5 cut(s)	172, 199, 266, 322, 1007
FalI	AAGNNNNNCTT	4 cut(s)	870, 902, 1026, 1058
FaqI	GGGAC	1 cut(s)	847
FatI	CATG	5 cut(s)	168, 195, 262, 318, 1003
FauI	CCCGC	1 cut(s)	648
FbaI	TGATCA	2 cut(s)	72, 109
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	640
FriOI	GRGCYC	2 cut(s)	657, 1026
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	554
GluI	GCNGC	1 cut(s)	129
HapII	CCGG	2 cut(s)	351, 650
HgaI	GACGC	1 cut(s)	885
Hin1I	GRCGYC	1 cut(s)	896
Hin1II	CATG	5 cut(s)	172, 199, 266, 322, 1007
HindIII	AAGCTT	2 cut(s)	375, 1035
HinfI	GANTC	5 cut(s)	137, 172, 200, 699, 1056
HpaII	CCGG	2 cut(s)	351, 650
HphI	GGTGA	5 cut(s)	70, 82, 155, 365, 694
Hpy166II	GTNNAC	4 cut(s)	259, 563, 868, 968
Hpy188III	TCNNGA	6 cut(s)	50, 113, 299, 547, 650, 745
Hpy8I	GTNNAC	4 cut(s)	259, 563, 868, 968
HpyAV	CCTTC	7 cut(s)	51, 55, 61, 323, 356, 496, 725
HpyCH4III	ACNGT	2 cut(s)	82, 711
HpyCH4IV	ACGT	2 cut(s)	417, 506
HpyCH4V	TGCA	5 cut(s)	231, 436, 563, 715, 968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	5 cut(s)	204, 534, 579, 814, 871
HpySE526I	ACGT	2 cut(s)	417, 506
Hsp92I	GRCGYC	1 cut(s)	896
Hsp92II	CATG	5 cut(s)	172, 199, 266, 322, 1007
Kpn2I	TCCGGA	1 cut(s)	649
Ksp22I	TGATCA	2 cut(s)	72, 109
Kzo9I	GATC	3 cut(s)	72, 109, 819
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	2 cut(s)	679, 862
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	2 cut(s)	417, 506
MaeIII	GTNAC	2 cut(s)	16, 474
MalI	GATC	3 cut(s)	74, 111, 821
MboI	GATC	3 cut(s)	72, 109, 819
MhlI	GDGCHC	4 cut(s)	565, 657, 970, 1026
MluCI	AATT	4 cut(s)	281, 621, 631, 927
MlyI	GAGTC	2 cut(s)	181, 693
MmeI	TCCRAC	1 cut(s)	784
MnlI	CCTC	9 cut(s)	87, 99, 118, 202, 468, 489, 574, 786, 876
MroI	TCCGGA	1 cut(s)	649
MseI	TTAA	1 cut(s)	720
MslI	CAYNNNNRTG	3 cut(s)	167, 687, 963
MspI	CCGG	2 cut(s)	351, 650
MspR9I	CCNGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	351
NcoI	CCATGG	4 cut(s)	195, 262, 318, 1003
NdeII	GATC	3 cut(s)	72, 109, 819
NlaIII	CATG	5 cut(s)	172, 199, 266, 322, 1007
NlaIV	GGNNCC	1 cut(s)	654
NruI	TCGCGA	1 cut(s)	548
OliI	CACNNNNGTG	1 cut(s)	963
PciSI	GCTCTTC	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	137, 200, 1056
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	2 cut(s)	180, 693
PpsI	GAGTC	2 cut(s)	180, 693
Ppu21I	YACGTR	1 cut(s)	507
PshAI	GACNNNNGTC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	1026
PspN4I	GGNNCC	1 cut(s)	654
PspPI	GGNCC	1 cut(s)	932
RruI	TCGCGA	1 cut(s)	548
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	3 cut(s)	167, 687, 963
SacI	GAGCTC	1 cut(s)	1026
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	720
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	3 cut(s)	72, 109, 819
Sau96I	GGNCC	1 cut(s)	932
SchI	GAGTC	2 cut(s)	181, 693
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	4 cut(s)	565, 657, 970, 1026
SfaNI	GCATC	2 cut(s)	679, 862
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	932
SmiMI	CAYNNNNRTG	3 cut(s)	167, 687, 963
SnaBI	TACGTA	1 cut(s)	507
Sse9I	AATT	4 cut(s)	281, 621, 631, 927
SsiI	CCGC	2 cut(s)	103, 641
SspMI	CTAG	1 cut(s)	554
SstI	GAGCTC	1 cut(s)	1026
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	4 cut(s)	195, 262, 318, 1003
TaaI	ACNGT	2 cut(s)	82, 711
TaiI	ACGT	2 cut(s)	420, 509
TaqI	TCGA	4 cut(s)	219, 360, 405, 1026
TasI	AATT	4 cut(s)	281, 621, 631, 927
TfiI	GAWTC	3 cut(s)	137, 200, 1056
Tru1I	TTAA	1 cut(s)	720
Tru9I	TTAA	1 cut(s)	720
TscAI	CASTG	2 cut(s)	504, 994
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	644, 738
TspRI	CASTG	2 cut(s)	504, 994
Van91I	CCANNNNNTGG	1 cut(s)	268
VneI	GTGCAC	2 cut(s)	561, 966
VpaK11BI	GGWCC	1 cut(s)	932
XapI	RAATTY	1 cut(s)	281
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.