Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

3746145 .. 3747034

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06512.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCAAATGGTGAGATTAATCATCAAGAAGAACTTTGTCTCTGAGTTTGGAGCAATGGAAGCATTAACAAAGCTAGGGAGCTCTCTTCCTGTGCCTTGTGTTCAGGAGCTTGCAAAACAGTCATTAACTACAGTCCCACAGCGATATGTTCGCCCTGATCAAGATCCTTCCTTCATTTCTGAGATGGCTACTTCTCTACCCCAAGTACCAGTAATCGACATGAACAAGTTACTTTCAGATGAAACCATGCCAGCAGAACTGAAGAAGTTCCACCTTGCTTGCGGACAATGGGGTTTCTTCCAGTTGATAAACCATGGAGTTGGTGAACCTTTGTTGGAGAGTGTGAAGTCGGGGATCAAAGAGTTCTTCAGTCTCCCAATGGAAGAGAAGAAACAGTTTTGGCAGCAGCCAGAAGATATGGAGGGTTTTGGACAAGCATTTGTTGTGTCTGAGAACCAGAAACTTGATTGGGCAGACATGTTCTATTTGATCTCACTCCCAAAACATTTCAGGAAGCCACATTTATTCCCCAAGCTTCCTCAACAATTAAGGTTTTCGATCTGTTTTTCTAAGACATATGTTATGTTGTCATATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

200

Amino Acids

22.9

Weight (kDa)

6.9

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	69 - 177	2.3e-29	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	2 cut(s)	158, 362
AcuI	CTGAAG	2 cut(s)	281, 352
AfaI	GTAC	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	477
AluBI	AGCT	4 cut(s)	73, 81, 109, 535
AluI	AGCT	4 cut(s)	73, 81, 109, 535
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	43, 377
AlwI	GGATC	2 cut(s)	158, 362
ApeKI	GCWGC	2 cut(s)	403, 406
AseI	ATTAAT	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	22, 335
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	415, 418
BccI	CCATC	1 cut(s)	178
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	43, 377
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	404, 407
BlsI	GCNGC	2 cut(s)	405, 408
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	209, 301
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	3 cut(s)	33, 171, 441
BseNI	ACTGG	2 cut(s)	209, 301
BseXI	GCAGC	2 cut(s)	415, 418
BsiHKAI	GWGCWC	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	43, 377
BsmFI	GGGAC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	5 cut(s)	157, 163, 354, 489, 558
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	1 cut(s)	282
BspCNI	CTCAG	3 cut(s)	34, 172, 442
BspPI	GGATC	2 cut(s)	158, 362
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	209, 301
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	5 cut(s)	157, 163, 354, 489, 558
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	120, 133, 396
Bst6I	CTCTTC	2 cut(s)	90, 378
BstC8I	GCNNGC	3 cut(s)	111, 252, 280
BstDEI	CTNAG	4 cut(s)	42, 180, 450, 570
BstDSI	CCRYGG	1 cut(s)	313
BstKTI	GATC	5 cut(s)	160, 166, 357, 492, 561
BstMAI	GTCTC	2 cut(s)	43, 377
BstMBI	GATC	5 cut(s)	157, 163, 354, 489, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	415, 418
BstX2I	RGATCY	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	111, 252, 280
Csp6I	GTAC	1 cut(s)	206
CspCI	CAANNNNNGTGG	2 cut(s)	260, 295
CviAII	CATG	4 cut(s)	220, 247, 314, 478
CviJI	RGCY	7 cut(s)	73, 81, 109, 188, 409, 517, 535
CviKI_1	RGCY	7 cut(s)	73, 81, 109, 188, 409, 517, 535
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	4 cut(s)	42, 180, 450, 570
DpnI	GATC	5 cut(s)	159, 165, 356, 491, 560
DpnII	GATC	5 cut(s)	157, 163, 354, 489, 558
Eam1104I	CTCTTC	2 cut(s)	90, 378
EarI	CTCTTC	2 cut(s)	90, 378
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	2 cut(s)	281, 352
EcoICRI	GAGCTC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	4 cut(s)	223, 250, 317, 481
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	219, 246, 313, 477
FauNDI	CATATG	1 cut(s)	577
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	404, 407
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	404, 407
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	404, 407
Hin1II	CATG	4 cut(s)	223, 250, 317, 481
HindIII	AAGCTT	1 cut(s)	533
HphI	GGTGA	2 cut(s)	22, 335
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	4 cut(s)	43, 181, 238, 451
Hpy188III	TCNNGA	4 cut(s)	25, 104, 161, 511
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	2 cut(s)	177, 181
HpyCH4III	ACNGT	3 cut(s)	120, 133, 396
HpyCH4V	TGCA	2 cut(s)	4, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	4 cut(s)	42, 180, 450, 570
Hsp92II	CATG	4 cut(s)	223, 250, 317, 481
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	157, 163, 354, 489, 558
LmnI	GCTCC	3 cut(s)	50, 78, 106
LpnPI	CCDG	9 cut(s)	89, 102, 168, 222, 264, 314, 423, 470, 496
Lsp1109I	GCAGC	2 cut(s)	415, 418
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	5 cut(s)	159, 165, 356, 491, 560
MboI	GATC	5 cut(s)	157, 163, 354, 489, 558
MboII	GAAGA	8 cut(s)	40, 77, 274, 289, 358, 395, 400, 425
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	2 cut(s)	415, 549
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	5 cut(s)	17, 65, 125, 548, 598
MwoI	GCNNNNNNNGC	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	5 cut(s)	157, 163, 354, 489, 558
NlaIII	CATG	4 cut(s)	223, 250, 317, 481
NspI	RCATGY	1 cut(s)	481
PciI	ACATGT	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	405, 408
PscI	ACATGT	1 cut(s)	477
PshBI	ATTAAT	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	5 cut(s)	17, 65, 125, 548, 598
SatI	GCNGC	2 cut(s)	404, 407
Sau3AI	GATC	5 cut(s)	157, 163, 354, 489, 558
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	7 cut(s)	75, 83, 111, 276, 331, 537, 554
SfcI	CTRYAG	1 cut(s)	129
Sse9I	AATT	1 cut(s)	545
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	120, 133, 396
TaqI	TCGA	2 cut(s)	216, 557
TasI	AATT	1 cut(s)	545
Tru1I	TTAA	5 cut(s)	17, 65, 125, 548, 598
Tru9I	TTAA	5 cut(s)	17, 65, 125, 548, 598
TseI	GCWGC	2 cut(s)	403, 406
TspDTI	ATGAA	3 cut(s)	163, 236, 255
VspI	ATTAAT	1 cut(s)	17
XceI	RCATGY	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.