Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

9232031 .. 9233588

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAAGAATTAGCAAAGCTAGGGAGCTCTCTTCCGGTGCCTTGTGTTCAGGAGCTTGCGAAAGAGCCATTAACTACAGTCCCACACCGATATGTTCGCCCTGATCAAGATCCTCCCTTCATTTCTGGTATGGCCACTTCTTCACCTCAAGTACCAGTGATCGACATGAACAAGTTACTTTCAGAAGAATCCATGCCAGCAGAGTTGCAGGAGTTCCACCTTGCTTGCAGAGAATGGGGTTTCTTCCAGTTACGTATAAATCTGATAAATCATGGAGTTGGTGAAACTATGTTGGAGAGTGTGAAGTCAGGGATTCAAGAATTCTTCAGTCTCCCAATGGAAGAGAAGAAACAGTTTTGGCAGCAGCCAGAAATTATGGAGGGTTTTGGACAAGCATTTGTTGTGTCTGAGAACCAGAAACTTGATTGGTCAGACATATTCTACTTAATCACACTCCCAAAACATTTGAGGAAGCCACATTTATTCCCCAATATTCCTCAACCACTAAGAGATAACTTAGAAGTGTACTCTGCGGAACTAGAAGATCTTGCCAAGAAGATTCTTGACCTCATGGCAAAAGCACTGGGAGTGGATGCTAACTATATAAAAGAGTTGTTTGACCAAGGGACTCAAATGTTTAGGATGAACTATTATCCACCATGTAAGCAACCAGAGCCTGTCATTGGCCTTAACCCTCACTCAGATGCTGTTGGATTGACCATCCTCCTCCAAGTGAATGAAATGGAAGGCCTTCAGGTTAGAAAAGATGGTATGTGGATTCCGATTAAACCCCTAAACAATGCTTTCGTCGTCAACGTTGGAGATATTTTGGAGATTGTGACGAATGGAACATACCGTAGCATTGAGCATCGGGCAACAGTGAACCAGGAGAAGGAAAGGCTGTCAATAGCCACATTTTACAGTCCAAAATTGGAAGGAGATATGGGTCCTGCTCCGAACCTCATTACTCCAGAGAGACCAGCATTGTTCAAGAGAATAGGTGTTGCAGACTACTTCAGGGGATTTTTTGAACGCAAACTCGAAGGGAAATCATACATAGATGTCATGAGGATTCAACATGGTGAGAATGGCAAAGGCACCCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

369

Amino Acids

42.0

Weight (kDa)

5.28

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 163	5.4e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	210 - 309	1.7e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 1097
AciI	CCGC	1 cut(s)	533
AclI	AACGTT	1 cut(s)	816
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	3 cut(s)	310, 737, 1000
AfaI	GTAC	2 cut(s)	153, 527
AfiI	CCNNNNNNNGG	2 cut(s)	683, 892
AgsI	TTSAA	4 cut(s)	317, 991, 1031, 1076
AjnI	CCWGG	1 cut(s)	885
AluBI	AGCT	3 cut(s)	19, 27, 55
AluI	AGCT	3 cut(s)	19, 27, 55
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	335, 970
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	2 cut(s)	677, 707
AoxI	GGCC	3 cut(s)	132, 685, 748
ApeKI	GCWGC	2 cut(s)	361, 364
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	750
AspS9I	GGNCC	1 cut(s)	947
AsuHPI	GGTGA	3 cut(s)	135, 293, 1094
AvaII	GGWCC	1 cut(s)	947
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	2 cut(s)	37, 1097
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	121, 153
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	373, 376
BccI	CCATC	2 cut(s)	728, 761
BciT130I	CCWGG	1 cut(s)	887
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	335, 970
BfaI	CTAG	3 cut(s)	20, 539, 1108
BfmI	CTRYAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	2 cut(s)	362, 365
BlsI	GCNGC	2 cut(s)	363, 366
Bme1390I	CCNGG	1 cut(s)	887
Bme18I	GGWCC	1 cut(s)	947
BmgT120I	GGNCC	1 cut(s)	947
BmiI	GGNNCC	3 cut(s)	39, 948, 1099
BmrFI	CCNGG	1 cut(s)	887
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	3 cut(s)	583, 694, 877
BmuI	ACTGGG	1 cut(s)	593
BpmI	CTGGAG	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	970
BsaJI	CCNNGG	1 cut(s)	622
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	683, 892
Bse1I	ACTGG	3 cut(s)	155, 247, 588
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	887
BseDI	CCNNGG	1 cut(s)	622
BseGI	GGATG	3 cut(s)	598, 648, 720
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	683, 892
BseMII	CTCAG	2 cut(s)	399, 714
BseNI	ACTGG	3 cut(s)	155, 247, 588
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	2 cut(s)	373, 376
BshFI	GGCC	3 cut(s)	134, 687, 750
BshNI	GGYRCC	2 cut(s)	37, 1097
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	65, 640
BslI	CCNNNNNNNGG	2 cut(s)	683, 892
BsmAI	GTCTC	2 cut(s)	335, 970
BsmFI	GGGAC	2 cut(s)	65, 640
BsnI	GGCC	3 cut(s)	134, 687, 750
Bso31I	GGTCTC	1 cut(s)	970
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	103, 109, 159, 544
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	3 cut(s)	134, 687, 750
BspCNI	CTCAG	2 cut(s)	400, 713
BspHI	TCATGA	1 cut(s)	1065
BspLI	GGNNCC	3 cut(s)	39, 948, 1099
BspPI	GGATC	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	37, 1097
BspTNI	GGTCTC	1 cut(s)	970
BsrI	ACTGG	3 cut(s)	155, 247, 588
BssECI	CCNNGG	1 cut(s)	622
BssMI	GATC	4 cut(s)	103, 109, 159, 544
BssT1I	CCWWGG	1 cut(s)	622
Bst2UI	CCWGG	1 cut(s)	887
Bst4CI	ACNGT	5 cut(s)	79, 354, 857, 880, 923
Bst6I	CTCTTC	2 cut(s)	36, 336
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	57, 198, 226
BstDEI	CTNAG	4 cut(s)	408, 506, 517, 700
BstF5I	GGATG	3 cut(s)	598, 648, 720
BstKTI	GATC	4 cut(s)	106, 112, 162, 547
BstMAI	GTCTC	2 cut(s)	335, 970
BstMBI	GATC	4 cut(s)	103, 109, 159, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	1 cut(s)	887
BstSCI	CCNGG	1 cut(s)	885
BstSFI	CTRYAG	1 cut(s)	75
BstSNI	TACGTA	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	373, 376
BstX2I	RGATCY	2 cut(s)	109, 544
BstYI	RGATCY	2 cut(s)	109, 544
BsuRI	GGCC	3 cut(s)	134, 687, 750
BtsCI	GGATG	3 cut(s)	598, 648, 720
BtsIMutI	CAGTG	3 cut(s)	162, 581, 885
Cac8I	GCNNGC	3 cut(s)	57, 198, 226
CaiI	CAGNNNCTG	2 cut(s)	677, 707
CciI	TCATGA	1 cut(s)	1065
Cfr13I	GGNCC	1 cut(s)	947
Csp6I	GTAC	2 cut(s)	152, 526
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CviAII	CATG	7 cut(s)	166, 193, 272, 571, 660, 1066, 1079
CviQI	GTAC	2 cut(s)	152, 526
DdeI	CTNAG	4 cut(s)	408, 506, 517, 700
DpnI	GATC	4 cut(s)	105, 111, 161, 546
DpnII	GATC	4 cut(s)	103, 109, 159, 544
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	36, 336
EarI	CTCTTC	2 cut(s)	36, 336
Ecl136II	GAGCTC	1 cut(s)	27
Eco105I	TACGTA	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	622
Eco147I	AGGCCT	1 cut(s)	750
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	970
Eco47I	GGWCC	1 cut(s)	947
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	3 cut(s)	310, 737, 1000
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	947
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	885
EcoT14I	CCWWGG	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	622
FaeI	CATG	7 cut(s)	169, 196, 275, 574, 663, 1069, 1082
FaqI	GGGAC	2 cut(s)	65, 640
FatI	CATG	7 cut(s)	165, 192, 271, 570, 659, 1065, 1078
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	362, 365
FokI	GGATG	3 cut(s)	605, 655, 707
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	362, 365
FspBI	CTAG	3 cut(s)	20, 539, 1108
GluI	GCNGC	2 cut(s)	362, 365
GsuI	CTGGAG	1 cut(s)	954
HaeIII	GGCC	3 cut(s)	134, 687, 750
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	7 cut(s)	169, 196, 275, 574, 663, 1069, 1082
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	6 cut(s)	188, 313, 559, 628, 778, 1072
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	135, 293, 1094
Hpy166II	GTNNAC	3 cut(s)	526, 814, 883
Hpy188I	TCNGA	7 cut(s)	184, 264, 409, 433, 703, 783, 957
Hpy188III	TCNNGA	7 cut(s)	50, 107, 317, 563, 971, 991, 1066
Hpy8I	GTNNAC	3 cut(s)	526, 814, 883
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	6 cut(s)	127, 740, 761, 886, 929, 1037
HpyCH4III	ACNGT	5 cut(s)	79, 354, 857, 880, 923
HpyCH4IV	ACGT	2 cut(s)	253, 816
HpyCH4V	TGCA	3 cut(s)	208, 228, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	4 cut(s)	408, 506, 517, 700
HpySE526I	ACGT	2 cut(s)	253, 816
Hsp92II	CATG	7 cut(s)	169, 196, 275, 574, 663, 1069, 1082
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	103, 109, 159, 544
LmnI	GCTCC	3 cut(s)	24, 52, 958
Lsp1109I	GCAGC	2 cut(s)	373, 376
LweI	GCATC	3 cut(s)	583, 694, 877
MaeI	CTAG	3 cut(s)	20, 539, 1108
MaeII	ACGT	2 cut(s)	253, 816
MaeIII	GTNAC	3 cut(s)	174, 249, 838
MalI	GATC	4 cut(s)	105, 111, 161, 546
MboI	GATC	4 cut(s)	103, 109, 159, 544
MflI	RGATCY	2 cut(s)	109, 544
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	4 cut(s)	8, 320, 372, 929
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	622
MmeI	TCCRAC	3 cut(s)	273, 691, 799
Mox20I	TGGCCA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	4 cut(s)	71, 446, 690, 786
MslI	CAYNNNNRTG	2 cut(s)	90, 702
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	887
MvaI	CCWGG	1 cut(s)	887
MwoI	GCNNNNNNNGC	1 cut(s)	673
NdeII	GATC	4 cut(s)	103, 109, 159, 544
NlaIII	CATG	7 cut(s)	169, 196, 275, 574, 663, 1069, 1082
NlaIV	GGNNCC	3 cut(s)	39, 948, 1099
NmuCI	GTSAC	1 cut(s)	838
PagI	TCATGA	1 cut(s)	1065
PceI	AGGCCT	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	1 cut(s)	813
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	5 cut(s)	188, 313, 559, 778, 1072
PkrI	GCNGC	2 cut(s)	363, 366
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	947
Psp124BI	GAGCTC	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	947
Psp6I	CCWGG	1 cut(s)	885
PspGI	CCWGG	1 cut(s)	885
PspN4I	GGNNCC	3 cut(s)	39, 948, 1099
PspPI	GGNCC	1 cut(s)	947
PspPPI	RGGWCCY	1 cut(s)	947
PstNI	CAGNNNCTG	2 cut(s)	677, 707
PsuI	RGATCY	2 cut(s)	109, 544
RsaI	GTAC	2 cut(s)	153, 527
RsaNI	GTAC	2 cut(s)	152, 526
RseI	CAYNNNNRTG	2 cut(s)	90, 702
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	4 cut(s)	71, 446, 690, 786
SatI	GCNGC	2 cut(s)	362, 365
Sau3AI	GATC	4 cut(s)	103, 109, 159, 544
Sau96I	GGNCC	1 cut(s)	947
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	1 cut(s)	887
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	3 cut(s)	583, 694, 877
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	947
SmiMI	CAYNNNNRTG	2 cut(s)	90, 702
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SnaBI	TACGTA	1 cut(s)	254
Sse9I	AATT	4 cut(s)	8, 320, 372, 929
SseBI	AGGCCT	1 cut(s)	750
SsiI	CCGC	1 cut(s)	533
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	3 cut(s)	20, 539, 1108
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	750
StyD4I	CCNGG	1 cut(s)	885
StyI	CCWWGG	1 cut(s)	622
TaaI	ACNGT	5 cut(s)	79, 354, 857, 880, 923
TaiI	ACGT	2 cut(s)	256, 819
TaqI	TCGA	2 cut(s)	162, 1041
TasI	AATT	4 cut(s)	8, 320, 372, 929
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	5 cut(s)	188, 313, 559, 778, 1072
Tru1I	TTAA	4 cut(s)	71, 446, 690, 786
Tru9I	TTAA	4 cut(s)	71, 446, 690, 786
TscAI	CASTG	3 cut(s)	162, 588, 885
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	2 cut(s)	361, 364
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	4 cut(s)	109, 182, 659, 753
TspRI	CASTG	3 cut(s)	162, 588, 885
VpaK11BI	GGWCC	1 cut(s)	947
XapI	RAATTY	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	3 cut(s)	20, 539, 1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.