Rw5G018520

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
23903591 .. 23905157
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018520.1

Sequence Viewer

Length: 1128 bp
ATGGAAATAGTAAAGGAAGAGAGCAGCAGCTGGGTATGCGGTGTTTCTCATCTTGTTCCTTCTGTTCAAGAATTAGCCAAGAAACCCATAACCACCCTTCCACCCAGATATATACAGCAAGATCTCGATGATAGTGATGCTCGAGACCAAAAAAACAAGATCGATTCCGACGACGCGCGCAGTTCTGTACAGCCTGAAATACCAACCATCAACTTCGAGAAACTGCTTTCCAGGAGAGAATCGAACAGTTCTCATGATTCTGATGAACTAGCTAGGCTCCACTTGGCTTGCAAAGAGTGGGGTTTCTTCCAGTTGGTAAACCATGGGGTGAGCTCTTCTTTGTTGGAGAAAATTAAGACAGAAATTCAAGACTTCTTCAACCTCTCGATAGAGGAGAAGAAAAGGTTATGGCAGCATCCAGAAGAAATGGAGGGTTTTGGACAACTCTTTGTCGTTTCTGAAGAGCAAAAACTTGATTGGGCTGACGTTTTCTTCCTTACCACCCTTCCTGTCCAGATGAGGAAGCCTCACTTATTCCCGGAGCTCCCTACTCCTTTCAAAGACACCTTGGAGATTTACTCATTGGAACTGAACAACCTAGCCATGGCTATCCTGACACAAATGGAAAATGCTTTAAAAATTGATGCCAAGGAATTGACCGAGTTATTTGAAGATGGAATGCAATCCATGAGGATGAACTATTATCCTCCATGTCCTCAGCCGGAGAAAGTCATCGGCTTTACTCCACATTCGGACGCCTCAGGCCTCACCATCCTCCTGCAAGTCAATGAAATTGAAGGTCTCCAAATCAAGAAGGACGGGATTTGGGTTCCCGTTAAGCCATTTCCTGATGCCTTTATTGTCAACATCGGAGACGCTTTGGAGATTAAAACAAATGGGACTTATCGTAGCATTGAGCATCGAGCAATTGTAAACTCCGAAAAAGAAAGACTCTCAATCGCGACATTTTGCAACCCGAGATTTGATGGTGAAATTGGACCAGCCTCTAGCTTGATCACGGAACAAACACCTGCTGCATATACAAGAATCGGAGTGCAAGACTACACCAAAGCCTTTTTTGCACGTAAGCTTCAAGGAAAATCTTTTCTTGATGATCTCAAAGTATAA

Protein Analysis

375

Amino Acids

42.69

Weight (kDa)

5.01

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 67 - 181 3.4e-28 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 228 - 326 4.1e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1039
Acc36I ACCTGC 1 cut(s) 1039
AccII CGCG 3 cut(s) 176, 178, 962
AciI CCGC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 756
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 604
AgsI TTSAA 7 cut(s) 68, 368, 379, 559, 671, 797, 1094
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 6 cut(s) 30, 272, 333, 544, 1011, 1090
AluI AGCT 6 cut(s) 30, 272, 333, 544, 1011, 1090
Alw21I GWGCWC 2 cut(s) 335, 546
Alw26I GTCTC 3 cut(s) 138, 806, 867
AlwNI CAGNNNCTG 1 cut(s) 30
Ama87I CYCGRG 2 cut(s) 141, 976
AoxI GGCC 1 cut(s) 763
ApeKI GCWGC 4 cut(s) 24, 27, 412, 1034
ApoI RAATTY 1 cut(s) 363
AspLEI GCGC 2 cut(s) 178, 180
AspS9I GGNCC 1 cut(s) 998
AsuC2I CCSGG 1 cut(s) 539
AsuHPI GGTGA 3 cut(s) 340, 760, 1001
AvaI CYCGRG 2 cut(s) 141, 976
AvaII GGWCC 1 cut(s) 998
AxyI CCTNAGG 1 cut(s) 760
BanII GRGCYC 2 cut(s) 335, 546
Bbv12I GWGCWC 2 cut(s) 335, 546
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 4 cut(s) 36, 39, 424, 1021
BccI CCATC 4 cut(s) 215, 668, 779, 980
BciT130I CCWGG 1 cut(s) 232
BclI TGATCA 1 cut(s) 1014
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 3 cut(s) 138, 806, 867
BfaI CTAG 4 cut(s) 269, 273, 599, 1008
BfuAI ACCTGC 1 cut(s) 1039
BglII AGATCT 1 cut(s) 121
BisI GCNGC 4 cut(s) 25, 28, 413, 1035
BlsI GCNGC 4 cut(s) 26, 29, 414, 1036
Bme1390I CCNGG 2 cut(s) 232, 539
Bme18I GGWCC 1 cut(s) 998
BmeT110I CYCGRG 2 cut(s) 141, 976
BmgT120I GGNCC 1 cut(s) 998
BmiI GGNNCC 2 cut(s) 278, 831
BmrFI CCNGG 2 cut(s) 232, 539
BmsI GCATC 5 cut(s) 127, 424, 634, 841, 928
BplI GAGNNNNNCTC 4 cut(s) 511, 543, 563, 595
Bpu10I CCTNAGC 1 cut(s) 717
BpuMI CCSGG 1 cut(s) 539
Bsa29I ATCGAT 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 1085
BsaHI GRCGYC 1 cut(s) 756
BsaI GGTCTC 2 cut(s) 138, 806
BsaJI CCNNGG 4 cut(s) 322, 567, 603, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 604
Bse1I ACTGG 1 cut(s) 310
Bse21I CCTNAGG 1 cut(s) 760
BseBI CCWGG 1 cut(s) 232
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 4 cut(s) 322, 567, 603, 648
BseGI GGATG 3 cut(s) 415, 699, 771
BseLI CCNNNNNNNGG 1 cut(s) 604
BseMII CTCAG 2 cut(s) 731, 774
BseNI ACTGG 1 cut(s) 310
BsePI GCGCGC 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 4 cut(s) 36, 39, 424, 1021
BseYI CCCAGC 1 cut(s) 30
Bsh1236I CGCG 3 cut(s) 176, 178, 962
BshFI GGCC 1 cut(s) 765
BshVI ATCGAT 1 cut(s) 162
BsiHKAI GWGCWC 2 cut(s) 335, 546
BsiHKCI CYCGRG 2 cut(s) 141, 976
BsiSI CCGG 2 cut(s) 539, 722
BslFI GGGAC 1 cut(s) 913
BslI CCNNNNNNNGG 1 cut(s) 604
BsmAI GTCTC 3 cut(s) 138, 806, 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 1 cut(s) 913
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 1 cut(s) 765
Bso31I GGTCTC 2 cut(s) 138, 806
BsoBI CYCGRG 2 cut(s) 141, 976
Bsp1286I GDGCHC 2 cut(s) 335, 546
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 4 cut(s) 121, 159, 1014, 1114
Bsp19I CCATGG 2 cut(s) 322, 603
Bsp68I TCGCGA 1 cut(s) 962
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 765
BspCNI CTCAG 2 cut(s) 730, 773
BspDI ATCGAT 1 cut(s) 162
BspFNI CGCG 3 cut(s) 176, 178, 962
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 278, 831
BspMI ACCTGC 1 cut(s) 1039
BspQI GCTCTTC 2 cut(s) 340, 456
BspTNI GGTCTC 2 cut(s) 138, 806
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 4 cut(s) 322, 567, 603, 648
BssHII GCGCGC 1 cut(s) 176
BssMI GATC 4 cut(s) 121, 159, 1014, 1114
BssNI GRCGYC 1 cut(s) 756
BssT1I CCWWGG 4 cut(s) 322, 567, 603, 648
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 3 cut(s) 12, 340, 456
BstACI GRCGYC 1 cut(s) 756
BstAUI TGTACA 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 1085
BstC8I GCNNGC 2 cut(s) 178, 289
BstDEI CTNAG 2 cut(s) 717, 760
BstDSI CCRYGG 2 cut(s) 322, 603
BstF5I GGATG 3 cut(s) 415, 699, 771
BstFNI CGCG 3 cut(s) 176, 178, 962
BstHHI GCGC 2 cut(s) 178, 180
BstKTI GATC 4 cut(s) 124, 162, 1017, 1117
BstMAI GTCTC 3 cut(s) 138, 806, 867
BstMBI GATC 4 cut(s) 121, 159, 1014, 1114
BstMWI GCNNNNNNNGC 2 cut(s) 36, 1079
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 230, 537
BstUI CGCG 3 cut(s) 176, 178, 962
BstV1I GCAGC 4 cut(s) 36, 39, 424, 1021
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 162
Bsu36I CCTNAGG 1 cut(s) 760
BsuRI GGCC 1 cut(s) 765
BsuTUI ATCGAT 1 cut(s) 162
BtgI CCRYGG 2 cut(s) 322, 603
BtsCI GGATG 3 cut(s) 415, 699, 771
BtuMI TCGCGA 1 cut(s) 962
BveI ACCTGC 1 cut(s) 1039
Cac8I GCNNGC 2 cut(s) 178, 289
CaiI CAGNNNCTG 1 cut(s) 30
CciI TCATGA 1 cut(s) 253
CfoI GCGC 2 cut(s) 178, 180
Cfr13I GGNCC 1 cut(s) 998
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 3 cut(s) 182, 764, 884
Csp6I GTAC 1 cut(s) 188
CspCI CAANNNNNGTGG 2 cut(s) 269, 304
CviAII CATG 5 cut(s) 254, 323, 604, 688, 711
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 717, 760
DpnI GATC 4 cut(s) 123, 161, 1016, 1116
DpnII GATC 4 cut(s) 121, 159, 1014, 1114
DraI TTTAAA 1 cut(s) 636
Eam1104I CTCTTC 3 cut(s) 12, 340, 456
EarI CTCTTC 3 cut(s) 12, 340, 456
Ecl136II GAGCTC 2 cut(s) 333, 544
Eco130I CCWWGG 4 cut(s) 322, 567, 603, 648
Eco147I AGGCCT 1 cut(s) 765
Eco24I GRGCYC 2 cut(s) 335, 546
Eco31I GGTCTC 2 cut(s) 138, 806
Eco47I GGWCC 1 cut(s) 998
Eco53kI GAGCTC 2 cut(s) 333, 544
Eco57I CTGAAG 1 cut(s) 480
Eco81I CCTNAGG 1 cut(s) 760
Eco88I CYCGRG 2 cut(s) 141, 976
EcoICRI GAGCTC 2 cut(s) 333, 544
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 4 cut(s) 322, 567, 603, 648
EcoT38I GRGCYC 2 cut(s) 335, 546
ErhI CCWWGG 4 cut(s) 322, 567, 603, 648
Esp3I CGTCTC 1 cut(s) 867
FaeI CATG 5 cut(s) 257, 326, 607, 691, 714
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 1 cut(s) 913
FatI CATG 5 cut(s) 253, 322, 603, 687, 710
FbaI TGATCA 1 cut(s) 1014
Fnu4HI GCNGC 4 cut(s) 25, 28, 413, 1035
FokI GGATG 3 cut(s) 402, 706, 758
FriOI GRGCYC 2 cut(s) 335, 546
Fsp4HI GCNGC 4 cut(s) 25, 28, 413, 1035
FspBI CTAG 4 cut(s) 269, 273, 599, 1008
GlaI GCGC 2 cut(s) 177, 179
GluI GCNGC 4 cut(s) 25, 28, 413, 1035
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 765
HapII CCGG 2 cut(s) 539, 722
HgaI GACGC 3 cut(s) 182, 764, 884
HhaI GCGC 2 cut(s) 178, 180
Hin1I GRCGYC 1 cut(s) 756
Hin1II CATG 5 cut(s) 257, 326, 607, 691, 714
Hin6I GCGC 2 cut(s) 176, 178
HinP1I GCGC 2 cut(s) 176, 178
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HindIII AAGCTT 1 cut(s) 1088
HinfI GANTC 5 cut(s) 164, 239, 257, 951, 1047
HpaII CCGG 2 cut(s) 539, 722
HphI GGTGA 3 cut(s) 340, 760, 1001
Hpy166II GTNNAC 3 cut(s) 319, 865, 934
Hpy188I TCNGA 7 cut(s) 169, 262, 460, 754, 872, 940, 1052
Hpy8I GTNNAC 3 cut(s) 319, 865, 934
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 5 cut(s) 69, 107, 515, 791, 808
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 2 cut(s) 486, 1084
HpyCH4V TGCA 7 cut(s) 291, 682, 781, 972, 1037, 1057, 1082
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 1079
HpyF3I CTNAG 2 cut(s) 717, 760
HpySE526I ACGT 2 cut(s) 486, 1084
Hsp92I GRCGYC 1 cut(s) 756
Hsp92II CATG 5 cut(s) 257, 326, 607, 691, 714
HspAI GCGC 2 cut(s) 176, 178
Ksp22I TGATCA 1 cut(s) 1014
Kzo9I GATC 4 cut(s) 121, 159, 1014, 1114
LguI GCTCTTC 2 cut(s) 340, 456
LmnI GCTCC 3 cut(s) 282, 541, 549
Lsp1109I GCAGC 4 cut(s) 36, 39, 424, 1021
LweI GCATC 5 cut(s) 127, 424, 634, 841, 928
MaeI CTAG 4 cut(s) 269, 273, 599, 1008
MaeII ACGT 2 cut(s) 486, 1084
MalI GATC 4 cut(s) 123, 161, 1016, 1116
MboI GATC 4 cut(s) 121, 159, 1014, 1114
MboII GAAGA 9 cut(s) 29, 298, 327, 367, 409, 434, 473, 484, 683
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 335, 546
MluCI AATT 8 cut(s) 71, 351, 363, 639, 653, 792, 927, 993
MlyI GAGTC 1 cut(s) 945
MmeI TCCRAC 2 cut(s) 192, 324
MseI TTAA 4 cut(s) 354, 635, 837, 888
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 2 cut(s) 539, 722
MspR9I CCNGG 2 cut(s) 232, 539
MunI CAATTG 1 cut(s) 927
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 3 cut(s) 176, 178, 962
MwoI GCNNNNNNNGC 2 cut(s) 36, 1079
NciI CCSGG 1 cut(s) 539
NcoI CCATGG 2 cut(s) 322, 603
NdeII GATC 4 cut(s) 121, 159, 1014, 1114
NlaIII CATG 5 cut(s) 257, 326, 607, 691, 714
NlaIV GGNNCC 2 cut(s) 278, 831
NruI TCGCGA 1 cut(s) 962
PaeR7I CTCGAG 1 cut(s) 141
PagI TCATGA 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 1039
PauI GCGCGC 1 cut(s) 176
PceI AGGCCT 1 cut(s) 765
PciSI GCTCTTC 2 cut(s) 340, 456
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 4 cut(s) 164, 239, 257, 1047
PfoI TCCNGGA 2 cut(s) 230, 537
PkrI GCNGC 4 cut(s) 26, 29, 414, 1036
PleI GAGTC 1 cut(s) 945
PpsI GAGTC 1 cut(s) 945
Ppu21I YACGTR 1 cut(s) 1085
Psp124BI GAGCTC 2 cut(s) 335, 546
Psp6I CCWGG 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 278, 831
PspPI GGNCC 1 cut(s) 998
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 121
PteI GCGCGC 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 30
RruI TCGCGA 1 cut(s) 962
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 692
SacI GAGCTC 2 cut(s) 335, 546
SapI GCTCTTC 2 cut(s) 340, 456
SaqAI TTAA 4 cut(s) 354, 635, 837, 888
SatI GCNGC 4 cut(s) 25, 28, 413, 1035
Sau3AI GATC 4 cut(s) 121, 159, 1014, 1114
Sau96I GGNCC 1 cut(s) 998
SchI GAGTC 1 cut(s) 945
ScrFI CCNGG 2 cut(s) 232, 539
SduI GDGCHC 2 cut(s) 335, 546
SfaNI GCATC 5 cut(s) 127, 424, 634, 841, 928
Sfr274I CTCGAG 1 cut(s) 141
SinI GGWCC 1 cut(s) 998
SlaI CTCGAG 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 8 cut(s) 71, 351, 363, 639, 653, 792, 927, 993
SseBI AGGCCT 1 cut(s) 765
SsiI CCGC 1 cut(s) 39
SspMI CTAG 4 cut(s) 269, 273, 599, 1008
SstI GAGCTC 2 cut(s) 335, 546
StuI AGGCCT 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 230, 537
StyI CCWWGG 4 cut(s) 322, 567, 603, 648
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 2 cut(s) 489, 1087
TaqI TCGA 7 cut(s) 126, 142, 162, 216, 242, 386, 922
TaqII GACCGA 1 cut(s) 674
TasI AATT 8 cut(s) 71, 351, 363, 639, 653, 792, 927, 993
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 4 cut(s) 164, 239, 257, 1047
Tru1I TTAA 4 cut(s) 354, 635, 837, 888
Tru9I TTAA 4 cut(s) 354, 635, 837, 888
TseI GCWGC 4 cut(s) 24, 27, 412, 1034
TspDTI ATGAA 3 cut(s) 279, 710, 804
TspGWI ACGGA 1 cut(s) 1034
VpaK11BI GGWCC 1 cut(s) 998
XapI RAATTY 1 cut(s) 363
XhoI CTCGAG 1 cut(s) 141
XspI CTAG 4 cut(s) 269, 273, 599, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.