Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003577.1

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

717 .. 2272

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003577.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atggaagaattagcaaagctagggagctctcttccggtgccttgtgttcaggagcttgcgaaagagccattaactacagtcccacaccgatatgttcgccctgatcaagatcctcccttcatttctggtatggccacttcttcacctcaagtaccagtgatccacatgaacaagttactttcagaagaaaccatgccagcagagttgcaggagttccaccttgcttgcagagaatggggtttcttccagctgataaatcatggagttggtgaaactttgttggagagtgtgaagtcagggattcaagaattcttcagtctcccaatggaagagaagaaacagttttggcagcagccagaaattatggagggttttggacaagcatttgttgtgtctgagaaccagaaacttgattggtcagacatattctacttaatcacactcccaaaacatttgaggaagccacatttattccccaatattcctcaaccactaagagataacttagaagtgtactctgcggaactagaagatcttgccaagaagattcttgacctcatggcaaaagcactgggagtggatgctaactatataaaagagttgtttgaccaagggactcaaatgtttaggatgaactattatccaccatgtaagcaaccagagcttgtcattggccttaaccctcactcagatgctgttggattgaccatcctcctccaagtaaatgaaatggaaggccttcaggttagaaaagatggtatgtggattccgattaaaccccaaaacaatgctttcgtcgtcaacgttggagatattttggagattgtgacgaatggaacataccgtagcattgagcatcgggcaacagtgaaccaggagaaggaaaggctgtcaatagccacattttacagtccaaaattggaaggagatatgggtcctgctccgaacctcattactccagagagaccagcattgttcaagagaataggtgttgcagactacttcaggggattttttgaacgcaaactcgaagggaaatcatacatagatgtcatgaggattcaacatggtgagaatggcaaaggcacccaagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

365

Amino Acids

41.55

Weight (kDa)

5.34

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 1085
AciI	CCGC	1 cut(s)	521
AclI	AACGTT	1 cut(s)	804
AclWI	GGATC	2 cut(s)	104, 154
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	3 cut(s)	298, 725, 988
AfaI	GTAC	2 cut(s)	153, 515
AfiI	CCNNNNNNNGG	1 cut(s)	880
AgsI	TTSAA	4 cut(s)	305, 979, 1019, 1064
AjnI	CCWGG	1 cut(s)	873
AluBI	AGCT	5 cut(s)	19, 27, 55, 250, 664
AluI	AGCT	5 cut(s)	19, 27, 55, 250, 664
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	323, 958
AlwI	GGATC	2 cut(s)	104, 154
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	132, 673, 736
ApeKI	GCWGC	2 cut(s)	349, 352
ApoI	RAATTY	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	1 cut(s)	935
AsuHPI	GGTGA	3 cut(s)	135, 281, 1082
AvaII	GGWCC	1 cut(s)	935
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	2 cut(s)	37, 1085
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	121, 153
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	361, 364
BccI	CCATC	2 cut(s)	716, 749
BciT130I	CCWGG	1 cut(s)	875
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	323, 958
BfaI	CTAG	3 cut(s)	20, 527, 1096
BfmI	CTRYAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	2 cut(s)	350, 353
BlsI	GCNGC	2 cut(s)	351, 354
Bme1390I	CCNGG	1 cut(s)	875
Bme18I	GGWCC	1 cut(s)	935
BmgT120I	GGNCC	1 cut(s)	935
BmiI	GGNNCC	3 cut(s)	39, 936, 1087
BmrFI	CCNGG	1 cut(s)	875
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	3 cut(s)	571, 682, 865
BmuI	ACTGGG	1 cut(s)	581
BpmI	CTGGAG	1 cut(s)	942
BpuEI	CTTGAG	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	958
BsaJI	CCNNGG	1 cut(s)	610
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	880
Bse1I	ACTGG	2 cut(s)	155, 576
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	875
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	3 cut(s)	586, 636, 708
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	880
BseMII	CTCAG	2 cut(s)	387, 702
BseNI	ACTGG	2 cut(s)	155, 576
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	2 cut(s)	361, 364
BshFI	GGCC	3 cut(s)	134, 675, 738
BshNI	GGYRCC	2 cut(s)	37, 1085
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	65, 628
BslI	CCNNNNNNNGG	1 cut(s)	880
BsmAI	GTCTC	2 cut(s)	323, 958
BsmFI	GGGAC	2 cut(s)	65, 628
BsnI	GGCC	3 cut(s)	134, 675, 738
Bso31I	GGTCTC	1 cut(s)	958
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	103, 109, 159, 532
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	3 cut(s)	134, 675, 738
BspCNI	CTCAG	2 cut(s)	388, 701
BspHI	TCATGA	1 cut(s)	1053
BspLI	GGNNCC	3 cut(s)	39, 936, 1087
BspPI	GGATC	2 cut(s)	104, 154
BspT107I	GGYRCC	2 cut(s)	37, 1085
BspTNI	GGTCTC	1 cut(s)	958
BsrI	ACTGG	2 cut(s)	155, 576
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	4 cut(s)	103, 109, 159, 532
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	875
Bst4CI	ACNGT	5 cut(s)	79, 342, 845, 868, 911
Bst6I	CTCTTC	2 cut(s)	36, 324
BstC8I	GCNNGC	3 cut(s)	57, 198, 226
BstDEI	CTNAG	4 cut(s)	396, 494, 505, 688
BstF5I	GGATG	3 cut(s)	586, 636, 708
BstKTI	GATC	4 cut(s)	106, 112, 162, 535
BstMAI	GTCTC	2 cut(s)	323, 958
BstMBI	GATC	4 cut(s)	103, 109, 159, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	661
BstNI	CCWGG	1 cut(s)	875
BstSCI	CCNGG	1 cut(s)	873
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	361, 364
BstX2I	RGATCY	2 cut(s)	109, 532
BstYI	RGATCY	2 cut(s)	109, 532
BsuRI	GGCC	3 cut(s)	134, 675, 738
BtsCI	GGATG	3 cut(s)	586, 636, 708
BtsIMutI	CAGTG	3 cut(s)	162, 569, 873
Cac8I	GCNNGC	3 cut(s)	57, 198, 226
CaiI	CAGNNNCTG	1 cut(s)	695
CciI	TCATGA	1 cut(s)	1053
Cfr13I	GGNCC	1 cut(s)	935
Csp6I	GTAC	2 cut(s)	152, 514
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CviAII	CATG	7 cut(s)	166, 193, 260, 559, 648, 1054, 1067
CviQI	GTAC	2 cut(s)	152, 514
DdeI	CTNAG	4 cut(s)	396, 494, 505, 688
DpnI	GATC	4 cut(s)	105, 111, 161, 534
DpnII	GATC	4 cut(s)	103, 109, 159, 532
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	36, 324
EarI	CTCTTC	2 cut(s)	36, 324
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	610
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	935
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	3 cut(s)	298, 725, 988
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	935
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	873
EcoT14I	CCWWGG	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	7 cut(s)	169, 196, 263, 562, 651, 1057, 1070
FaqI	GGGAC	2 cut(s)	65, 628
FatI	CATG	7 cut(s)	165, 192, 259, 558, 647, 1053, 1066
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	350, 353
FokI	GGATG	3 cut(s)	593, 643, 695
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	350, 353
FspBI	CTAG	3 cut(s)	20, 527, 1096
GluI	GCNGC	2 cut(s)	350, 353
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	3 cut(s)	134, 675, 738
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	7 cut(s)	169, 196, 263, 562, 651, 1057, 1070
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	5 cut(s)	301, 547, 616, 766, 1060
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	135, 281, 1082
Hpy166II	GTNNAC	3 cut(s)	514, 802, 871
Hpy188I	TCNGA	6 cut(s)	184, 397, 421, 691, 771, 945
Hpy188III	TCNNGA	7 cut(s)	50, 107, 305, 551, 959, 979, 1054
Hpy8I	GTNNAC	3 cut(s)	514, 802, 871
Hpy99I	CGWCG	1 cut(s)	800
HpyAV	CCTTC	6 cut(s)	127, 728, 749, 874, 917, 1025
HpyCH4III	ACNGT	5 cut(s)	79, 342, 845, 868, 911
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	3 cut(s)	208, 228, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	661
HpyF3I	CTNAG	4 cut(s)	396, 494, 505, 688
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	7 cut(s)	169, 196, 263, 562, 651, 1057, 1070
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	103, 109, 159, 532
LmnI	GCTCC	3 cut(s)	24, 52, 946
Lsp1109I	GCAGC	2 cut(s)	361, 364
LweI	GCATC	3 cut(s)	571, 682, 865
MaeI	CTAG	3 cut(s)	20, 527, 1096
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	2 cut(s)	174, 826
MalI	GATC	4 cut(s)	105, 111, 161, 534
MboI	GATC	4 cut(s)	103, 109, 159, 532
MflI	RGATCY	2 cut(s)	109, 532
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	4 cut(s)	8, 308, 360, 917
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	3 cut(s)	261, 679, 787
Mox20I	TGGCCA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	4 cut(s)	71, 434, 678, 774
MslI	CAYNNNNRTG	2 cut(s)	90, 690
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	875
MvaI	CCWGG	1 cut(s)	875
MwoI	GCNNNNNNNGC	1 cut(s)	661
NdeII	GATC	4 cut(s)	103, 109, 159, 532
NlaIII	CATG	7 cut(s)	169, 196, 263, 562, 651, 1057, 1070
NlaIV	GGNNCC	3 cut(s)	39, 936, 1087
NmuCI	GTSAC	1 cut(s)	826
PagI	TCATGA	1 cut(s)	1053
PceI	AGGCCT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	4 cut(s)	301, 547, 766, 1060
PkrI	GCNGC	2 cut(s)	351, 354
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PpuMI	RGGWCCY	1 cut(s)	935
Psp124BI	GAGCTC	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	935
Psp6I	CCWGG	1 cut(s)	873
PspGI	CCWGG	1 cut(s)	873
PspN4I	GGNNCC	3 cut(s)	39, 936, 1087
PspPI	GGNCC	1 cut(s)	935
PspPPI	RGGWCCY	1 cut(s)	935
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	109, 532
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	2 cut(s)	153, 515
RsaNI	GTAC	2 cut(s)	152, 514
RseI	CAYNNNNRTG	2 cut(s)	90, 690
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	4 cut(s)	71, 434, 678, 774
SatI	GCNGC	2 cut(s)	350, 353
Sau3AI	GATC	4 cut(s)	103, 109, 159, 532
Sau96I	GGNCC	1 cut(s)	935
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	1 cut(s)	875
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	3 cut(s)	571, 682, 865
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	935
SmiMI	CAYNNNNRTG	2 cut(s)	90, 690
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	4 cut(s)	8, 308, 360, 917
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	1 cut(s)	521
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	3 cut(s)	20, 527, 1096
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	1 cut(s)	873
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	5 cut(s)	79, 342, 845, 868, 911
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	1 cut(s)	1029
TasI	AATT	4 cut(s)	8, 308, 360, 917
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	4 cut(s)	301, 547, 766, 1060
Tru1I	TTAA	4 cut(s)	71, 434, 678, 774
Tru9I	TTAA	4 cut(s)	71, 434, 678, 774
TscAI	CASTG	3 cut(s)	162, 576, 873
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	2 cut(s)	349, 352
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	4 cut(s)	109, 182, 647, 741
TspRI	CASTG	3 cut(s)	162, 576, 873
VpaK11BI	GGWCC	1 cut(s)	935
XapI	RAATTY	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	3 cut(s)	20, 527, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.