Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

3735367 .. 3738537

Gene Structure 3171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06511.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTACTTCTCTACCCGTACCCCAAGTACCAGTGATCGACATGAACAAGTTACTTTCAGATGAAACCATGCCAGCAGAGCTGCAGAAGTTCCACCTTGCTTGCGGACAATGGGGTTTCTTCCAGTTGATAAACCATGGAGTTGGTGAACCTTTGTTGGAGAGTGTGAAGTCGGGGATCAAAGAGTTCTTCAGTCTCCCAATGGAAGAGAAGAAACAGTTTTGGCAGCAGCCAGAAGATATGGAGGGTTTTGGACAAGCATTTGTTGTGTCTGAGAACCAGAAACTTAATTGGTCAGACATGTTCTTTTTGATCTCACTCCCAAAACATTTCAGGAAGCCACATTTATTCCCCAAGCTTCCTCAACAATTAAGAGATGACCTAGAAGTGTACTCAGCGGAACTAGAAGATCTTGCCAAGAAGATTCTTGACCTCATGGCAAAAGCACTGGGAGTGGAAGCTAATTATATGAGAGAGTTGTTTGACCAAGGGACTCAAATCTTTAGGATGAACTATTATCCACCATGTAAGCAACCAGAGCTTGTCATTGGCCTTAACCCTCACTCAGATCCTGTTGGATTGACCATCCTCCTCCAAGTGAATGAAATGGAAGGTCTTCAGGTTAGGAAAGATGGAAGGTGGACTCCGATTAAACCCCTAAACAATGCTTTCATCGTCAACGTCGGAGATATTTTGGAGATTGTGACGAATGGAATTTACCGTAGCATTGAGCATCGGGCTACGGTGAACCAGGAGAAGGAGAGGCTGTCGATAGCTACTTTTTACAGTCCAAACTTGGGAGGAGACCTGGGTCCTGCTCCGAGCCTTATTACTCCAGAGAGACCAGCATTGTTCAAGAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

289

Amino Acids

32.82

Weight (kDa)

5.48

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 118	4.6e-28	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	165 - 264	6e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 398
AclWI	GGATC	2 cut(s)	185, 563
AcsI	RAATTY	1 cut(s)	714
AcuI	CTGAAG	2 cut(s)	175, 602
AfaI	GTAC	3 cut(s)	21, 30, 392
AfiI	CCNNNNNNNGG	2 cut(s)	757, 797
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	856
AjnI	CCWGG	2 cut(s)	750, 807
AluBI	AGCT	5 cut(s)	82, 358, 461, 541, 776
AluI	AGCT	5 cut(s)	82, 358, 461, 541, 776
Alw26I	GTCTC	3 cut(s)	200, 798, 835
AlwI	GGATC	2 cut(s)	185, 563
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	82, 226, 229
ApoI	RAATTY	1 cut(s)	714
Asp700I	GAANNNNTTC	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	812
AsuHPI	GGTGA	2 cut(s)	158, 757
AvaII	GGWCC	1 cut(s)	812
BbsI	GAAGAC	1 cut(s)	608
BbvI	GCAGC	3 cut(s)	69, 238, 241
BccI	CCATC	2 cut(s)	593, 626
BciT130I	CCWGG	2 cut(s)	752, 809
BcoDI	GTCTC	3 cut(s)	200, 798, 835
BfaI	CTAG	2 cut(s)	383, 404
BfmI	CTRYAG	1 cut(s)	83
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	3 cut(s)	83, 227, 230
BlsI	GCNGC	3 cut(s)	84, 228, 231
Bme1390I	CCNGG	2 cut(s)	752, 809
Bme18I	GGWCC	1 cut(s)	812
BmgT120I	GGNCC	1 cut(s)	812
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	2 cut(s)	752, 809
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	742
BmuI	ACTGGG	1 cut(s)	458
BoxI	GACNNNNGTC	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	819
BsaI	GGTCTC	2 cut(s)	798, 835
BsaJI	CCNNGG	3 cut(s)	136, 487, 808
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	2 cut(s)	757, 797
Bse1I	ACTGG	3 cut(s)	32, 124, 453
BseBI	CCWGG	2 cut(s)	752, 809
BseDI	CCNNGG	3 cut(s)	136, 487, 808
BseGI	GGATG	2 cut(s)	513, 585
BseLI	CCNNNNNNNGG	2 cut(s)	757, 797
BseMII	CTCAG	3 cut(s)	264, 408, 579
BseNI	ACTGG	3 cut(s)	32, 124, 453
BseRI	GAGGAG	2 cut(s)	581, 816
BseXI	GCAGC	3 cut(s)	69, 238, 241
BshFI	GGCC	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	2 cut(s)	757, 797
BsmAI	GTCTC	3 cut(s)	200, 798, 835
BsmFI	GGGAC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	552
Bso31I	GGTCTC	2 cut(s)	798, 835
Bsp143I	GATC	5 cut(s)	36, 177, 312, 409, 568
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	2 cut(s)	105, 398
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	3 cut(s)	265, 407, 578
BspLI	GGNNCC	1 cut(s)	813
BspMAI	CTGCAG	1 cut(s)	87
BspPI	GGATC	2 cut(s)	185, 563
BspTNI	GGTCTC	2 cut(s)	798, 835
BsrI	ACTGG	3 cut(s)	32, 124, 453
BssECI	CCNNGG	3 cut(s)	136, 487, 808
BssMI	GATC	5 cut(s)	36, 177, 312, 409, 568
BssT1I	CCWWGG	2 cut(s)	136, 487
Bst2UI	CCWGG	2 cut(s)	752, 809
Bst4CI	ACNGT	4 cut(s)	219, 722, 745, 788
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	75, 103
BstDEI	CTNAG	3 cut(s)	273, 394, 565
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	513, 585
BstKTI	GATC	5 cut(s)	39, 180, 315, 412, 571
BstMAI	GTCTC	3 cut(s)	200, 798, 835
BstMBI	GATC	5 cut(s)	36, 177, 312, 409, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 538
BstNI	CCWGG	2 cut(s)	752, 809
BstNSI	RCATGY	1 cut(s)	304
BstPAI	GACNNNNGTC	1 cut(s)	810
BstSCI	CCNGG	2 cut(s)	750, 807
BstSFI	CTRYAG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	69, 238, 241
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	2 cut(s)	409, 568
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	409, 568
BsuRI	GGCC	1 cut(s)	552
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	513, 585
BtsIMutI	CAGTG	2 cut(s)	39, 446
Cac8I	GCNNGC	2 cut(s)	75, 103
CaiI	CAGNNNCTG	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	812
Csp6I	GTAC	3 cut(s)	20, 29, 391
CspCI	CAANNNNNGTGG	2 cut(s)	83, 118
CviAII	CATG	6 cut(s)	43, 70, 137, 301, 436, 525
CviQI	GTAC	3 cut(s)	20, 29, 391
DdeI	CTNAG	3 cut(s)	273, 394, 565
DpnI	GATC	5 cut(s)	38, 179, 314, 411, 570
DpnII	GATC	5 cut(s)	36, 177, 312, 409, 568
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	136, 487
Eco31I	GGTCTC	2 cut(s)	798, 835
Eco47I	GGWCC	1 cut(s)	812
Eco57I	CTGAAG	2 cut(s)	175, 602
EcoO109I	RGGNCCY	1 cut(s)	812
EcoRII	CCWGG	2 cut(s)	750, 807
EcoT14I	CCWWGG	2 cut(s)	136, 487
ErhI	CCWWGG	2 cut(s)	136, 487
FaeI	CATG	6 cut(s)	46, 73, 140, 304, 439, 528
FaiI	YATR	9 cut(s)	44, 71, 138, 242, 302, 437, 468, 470, 526
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	6 cut(s)	42, 69, 136, 300, 435, 524
Fnu4HI	GCNGC	3 cut(s)	83, 227, 230
FokI	GGATG	2 cut(s)	520, 572
Fsp4HI	GCNGC	3 cut(s)	83, 227, 230
FspBI	CTAG	2 cut(s)	383, 404
GluI	GCNGC	3 cut(s)	83, 227, 230
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	1 cut(s)	552
Hin1II	CATG	6 cut(s)	46, 73, 140, 304, 439, 528
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	3 cut(s)	424, 493, 643
HphI	GGTGA	2 cut(s)	158, 757
Hpy166II	GTNNAC	5 cut(s)	149, 391, 642, 679, 748
Hpy188I	TCNGA	7 cut(s)	61, 274, 298, 568, 648, 686, 822
Hpy188III	TCNNGA	4 cut(s)	334, 428, 836, 856
Hpy8I	GTNNAC	5 cut(s)	149, 391, 642, 679, 748
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	3 cut(s)	605, 630, 751
HpyCH4III	ACNGT	4 cut(s)	219, 722, 745, 788
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 538
HpyF3I	CTNAG	3 cut(s)	273, 394, 565
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	6 cut(s)	46, 73, 140, 304, 439, 528
Kzo9I	GATC	5 cut(s)	36, 177, 312, 409, 568
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	3 cut(s)	69, 238, 241
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	2 cut(s)	383, 404
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	2 cut(s)	51, 703
MalI	GATC	5 cut(s)	38, 179, 314, 411, 570
MboI	GATC	5 cut(s)	36, 177, 312, 409, 568
MboII	GAAGA	8 cut(s)	112, 181, 218, 223, 248, 419, 433, 608
MflI	RGATCY	2 cut(s)	409, 568
MluCI	AATT	4 cut(s)	289, 368, 463, 714
MlyI	GAGTC	2 cut(s)	487, 637
MmeI	TCCRAC	3 cut(s)	138, 556, 664
MnlI	CCTC	8 cut(s)	238, 372, 443, 570, 599, 602, 756, 794
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	4 cut(s)	288, 371, 555, 651
MspA1I	CMGCKG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	752, 809
MvaI	CCWGG	2 cut(s)	752, 809
MwoI	GCNNNNNNNGC	2 cut(s)	79, 538
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	5 cut(s)	36, 177, 312, 409, 568
NlaIII	CATG	6 cut(s)	46, 73, 140, 304, 439, 528
NlaIV	GGNNCC	1 cut(s)	813
NmuCI	GTSAC	1 cut(s)	703
NspI	RCATGY	1 cut(s)	304
PciI	ACATGT	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	424
PkrI	GCNGC	3 cut(s)	84, 228, 231
PleI	GAGTC	2 cut(s)	487, 637
PpsI	GAGTC	2 cut(s)	487, 637
PpuMI	RGGWCCY	1 cut(s)	812
PscI	ACATGT	1 cut(s)	300
PshAI	GACNNNNGTC	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	2 cut(s)	750, 807
PspGI	CCWGG	2 cut(s)	750, 807
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	1 cut(s)	812
PspPPI	RGGWCCY	1 cut(s)	812
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	409, 568
RsaI	GTAC	3 cut(s)	21, 30, 392
RsaNI	GTAC	3 cut(s)	20, 29, 391
SaqAI	TTAA	4 cut(s)	288, 371, 555, 651
SatI	GCNGC	3 cut(s)	83, 227, 230
Sau3AI	GATC	5 cut(s)	36, 177, 312, 409, 568
Sau96I	GGNCC	1 cut(s)	812
SchI	GAGTC	2 cut(s)	487, 637
ScrFI	CCNGG	2 cut(s)	752, 809
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	812
Sse9I	AATT	4 cut(s)	289, 368, 463, 714
SsiI	CCGC	2 cut(s)	105, 398
SspMI	CTAG	2 cut(s)	383, 404
StyD4I	CCNGG	2 cut(s)	750, 807
StyI	CCWWGG	2 cut(s)	136, 487
TaaI	ACNGT	4 cut(s)	219, 722, 745, 788
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	2 cut(s)	39, 770
TasI	AATT	4 cut(s)	289, 368, 463, 714
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	4 cut(s)	288, 371, 555, 651
Tru9I	TTAA	4 cut(s)	288, 371, 555, 651
TscAI	CASTG	2 cut(s)	39, 453
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	3 cut(s)	82, 226, 229
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	5 cut(s)	59, 78, 524, 618, 661
TspRI	CASTG	2 cut(s)	39, 453
VpaK11BI	GGWCC	1 cut(s)	812
XapI	RAATTY	1 cut(s)	714
XceI	RCATGY	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	2 cut(s)	383, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.