Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

38757272 .. 38762141

Gene Structure 4870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1272000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCTAAGTATGGAAGAAAAGGCATTTGCAGAGAAGAGCTTGTACGGTGGTTCTCTTCCTGTTCCTAGTGTTCAAGAATTAGTACAGAAGCCAATACTCACAATCCCACCCAGATACATACAGCCTTATCATCAAGAGATCATCAGTTCTGATCATCATGCTCATCAAATCCCATCCATTGACATGCAGAAATTGCTTTCCCAAGAATCAACCATTTCTGAATCTGAACTAGCCAGGCTACATTTTGCTTGCCAAGAGTGGGGTTTCTTTCAGTTGGTAAACCATGGTGTGAGCTCTTCCTTGTTGGAGAAAATGAAGACAGAAACTCAAGAGTTCTTCAACCTACCCATGGAAGAGAAGAAAATATTTTCGCAACAGCCAGGAGACATTGAAGGTTTTGGACAATCTTTTGTAGTTTCTGAAGACCAAAAACTCGATTGGGCTGACACTTTCGTCTTGACCACCCTTCCTGTCCAACTGAGGAAGCCTCACCTACTCCCAAAACTCCCTTCTCCTTTCAGAGAGACTATAGAAACTTACTCATTGGAACTGAAAAAGCTAGCCATGACTATCCTATCACAAATGGAAAAAGCTTTGCAGATGGAAACCAATGAAGTGACCAACATATTCGAAGGTGCATTGCAAGCGGTGAGGGTGAACTATTACCCTCCGTGTCCTCAGCCGGGGAAAGTCCTCGGTCTGACCCCTCACTCTGATGGTGGAGCTCTCACCATCCTCCTACAAGTCAATGAAATGGATGGCCTCCAAGTAAAGAAAGATGGGATTTGGGTTCCTGTGAAGCCACTACCAGATGCCTTTATTGTGAATATTGGAGACGTTCTAGAGGTTATAACAAATGGGACGTATCGTAGCATTGAACATCGTGCAATTGTGAACTCTGAAAAAGAAAGGCTCTCAATCGCCACATTTTACAACCCCAGAGTTGATGGTGAAATCGGCCCAGCCTCTAGCTTGATTACTGAGAAAACACCTGCAGCATTTAAAAGGCTGAGTGTTGAAGAATATTTGAAAGCAATTTTTGATCGTAAGCTTCATGGAAAGTCTTTTCTTGACGAATTGAGGATTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

40.99

Weight (kDa)

5.56

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	57 - 167	1.3e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 313	1.8e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	851
AarI	CACCTGC	1 cut(s)	1000
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	1000
AciI	CCGC	1 cut(s)	647
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	2 cut(s)	44, 84
AfiI	CCNNNNNNNGG	3 cut(s)	259, 349, 683
AgsI	TTSAA	6 cut(s)	74, 340, 392, 878, 1019, 1030
AjnI	CCWGG	2 cut(s)	233, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AluBI	AGCT	7 cut(s)	39, 294, 559, 593, 725, 972, 1051
AluI	AGCT	7 cut(s)	39, 294, 559, 593, 725, 972, 1051
Alw21I	GWGCWC	2 cut(s)	296, 727
Alw26I	GTCTC	3 cut(s)	378, 518, 828
AoxI	GGCC	2 cut(s)	760, 958
ApeKI	GCWGC	1 cut(s)	995
AspS9I	GGNCC	1 cut(s)	959
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	5 cut(s)	482, 661, 667, 721, 962
AsuII	TTCGAA	1 cut(s)	630
AsuNHI	GCTAGC	1 cut(s)	559
BanII	GRGCYC	2 cut(s)	296, 727
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BbsI	GAAGAC	2 cut(s)	323, 429
Bbv12I	GWGCWC	2 cut(s)	296, 727
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	1 cut(s)	1007
BccI	CCATC	7 cut(s)	181, 595, 710, 740, 752, 773, 941
BciT130I	CCWGG	2 cut(s)	235, 381
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	378, 518, 828
BfaI	CTAG	5 cut(s)	66, 230, 560, 842, 969
BfmI	CTRYAG	2 cut(s)	528, 993
BfuAI	ACCTGC	1 cut(s)	1000
BisI	GCNGC	1 cut(s)	996
BlsI	GCNGC	1 cut(s)	997
Bme1390I	CCNGG	3 cut(s)	235, 381, 684
BmgT120I	GGNCC	1 cut(s)	959
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	3 cut(s)	235, 381, 684
BmsI	GCATC	1 cut(s)	802
BmtI	GCTAGC	1 cut(s)	563
BpiI	GAAGAC	2 cut(s)	323, 429
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	684
BsaJI	CCNNGG	4 cut(s)	283, 348, 683, 694
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 349, 683
Bse3DI	GCAATG	1 cut(s)	638
BseBI	CCWGG	2 cut(s)	235, 381
BseDI	CCNNGG	4 cut(s)	283, 348, 683, 694
BseGI	GGATG	3 cut(s)	173, 732, 763
BseLI	CCNNNNNNNGG	3 cut(s)	259, 349, 683
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	4 cut(s)	470, 692, 972, 1001
BseXI	GCAGC	1 cut(s)	1007
BseYI	CCCAGC	1 cut(s)	961
BshFI	GGCC	2 cut(s)	762, 960
BsiHKAI	GWGCWC	2 cut(s)	296, 727
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	874
BslI	CCNNNNNNNGG	3 cut(s)	259, 349, 683
BsmAI	GTCTC	3 cut(s)	378, 518, 828
BsmBI	CGTCTC	1 cut(s)	828
BsmFI	GGGAC	1 cut(s)	874
BsnI	GGCC	2 cut(s)	762, 960
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1286I	GDGCHC	2 cut(s)	296, 727
Bsp143I	GATC	3 cut(s)	138, 151, 1042
Bsp19I	CCATGG	2 cut(s)	283, 348
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	2 cut(s)	762, 960
BspCNI	CTCAG	4 cut(s)	471, 691, 973, 1002
BspLI	GGNNCC	1 cut(s)	792
BspMAI	CTGCAG	1 cut(s)	997
BspMI	ACCTGC	1 cut(s)	1000
BspOI	GCTAGC	1 cut(s)	563
BspQI	GCTCTTC	2 cut(s)	29, 301
BspT104I	TTCGAA	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	638
BssECI	CCNNGG	4 cut(s)	283, 348, 683, 694
BssMI	GATC	3 cut(s)	138, 151, 1042
BssT1I	CCWWGG	2 cut(s)	283, 348
Bst2UI	CCWGG	2 cut(s)	235, 381
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	4 cut(s)	29, 60, 301, 348
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	630
BstC8I	GCNNGC	3 cut(s)	250, 561, 645
BstDEI	CTNAG	5 cut(s)	5, 479, 678, 981, 1010
BstDSI	CCRYGG	2 cut(s)	283, 348
BstF5I	GGATG	3 cut(s)	173, 732, 763
BstKTI	GATC	3 cut(s)	141, 154, 1045
BstMAI	GTCTC	3 cut(s)	378, 518, 828
BstMBI	GATC	3 cut(s)	138, 151, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 644
BstNI	CCWGG	2 cut(s)	235, 381
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	233, 379, 682
BstSFI	CTRYAG	2 cut(s)	528, 993
BstV1I	GCAGC	1 cut(s)	1007
BstV2I	GAAGAC	2 cut(s)	323, 429
BsuRI	GGCC	2 cut(s)	762, 960
BtgI	CCRYGG	2 cut(s)	283, 348
BtsCI	GGATG	3 cut(s)	173, 732, 763
BveI	ACCTGC	1 cut(s)	1000
Cac8I	GCNNGC	3 cut(s)	250, 561, 645
Cfr13I	GGNCC	1 cut(s)	959
Csp6I	GTAC	2 cut(s)	43, 83
CviAII	CATG	6 cut(s)	158, 184, 284, 349, 565, 1055
CviQI	GTAC	2 cut(s)	43, 83
DdeI	CTNAG	5 cut(s)	5, 479, 678, 981, 1010
DpnI	GATC	3 cut(s)	140, 153, 1044
DpnII	GATC	3 cut(s)	138, 151, 1042
DraI	TTTAAA	1 cut(s)	1003
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
Eam1104I	CTCTTC	4 cut(s)	29, 60, 301, 348
EarI	CTCTTC	4 cut(s)	29, 60, 301, 348
Ecl136II	GAGCTC	2 cut(s)	294, 725
Eco130I	CCWWGG	2 cut(s)	283, 348
Eco24I	GRGCYC	2 cut(s)	296, 727
Eco53kI	GAGCTC	2 cut(s)	294, 725
Eco57I	CTGAAG	1 cut(s)	441
EcoICRI	GAGCTC	2 cut(s)	294, 725
EcoRII	CCWGG	2 cut(s)	233, 379
EcoT14I	CCWWGG	2 cut(s)	283, 348
EcoT38I	GRGCYC	2 cut(s)	296, 727
ErhI	CCWWGG	2 cut(s)	283, 348
Esp3I	CGTCTC	1 cut(s)	828
FaeI	CATG	6 cut(s)	161, 187, 287, 352, 568, 1058
FaqI	GGGAC	1 cut(s)	874
FatI	CATG	6 cut(s)	157, 183, 283, 348, 564, 1054
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	996
FokI	GGATG	3 cut(s)	160, 719, 770
FriOI	GRGCYC	2 cut(s)	296, 727
Fsp4HI	GCNGC	1 cut(s)	996
FspBI	CTAG	5 cut(s)	66, 230, 560, 842, 969
GluI	GCNGC	1 cut(s)	996
GsaI	CCCAGC	1 cut(s)	965
HaeIII	GGCC	2 cut(s)	762, 960
HapII	CCGG	1 cut(s)	683
Hin1II	CATG	6 cut(s)	161, 187, 287, 352, 568, 1058
HindIII	AAGCTT	2 cut(s)	591, 1049
HinfI	GANTC	2 cut(s)	206, 221
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	5 cut(s)	482, 661, 667, 721, 962
Hpy166II	GTNNAC	3 cut(s)	280, 658, 895
Hpy188I	TCNGA	8 cut(s)	151, 220, 226, 421, 521, 702, 715, 901
Hpy188III	TCNNGA	6 cut(s)	74, 134, 329, 457, 842, 1070
Hpy8I	GTNNAC	3 cut(s)	280, 658, 895
HpyAV	CCTTC	4 cut(s)	386, 476, 519, 626
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	2 cut(s)	837, 863
HpyCH4V	TGCA	7 cut(s)	29, 187, 598, 638, 643, 887, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 644
HpyF3I	CTNAG	5 cut(s)	5, 479, 678, 981, 1010
HpySE526I	ACGT	2 cut(s)	837, 863
Hsp92II	CATG	6 cut(s)	161, 187, 287, 352, 568, 1058
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	138, 151, 1042
LguI	GCTCTTC	2 cut(s)	29, 301
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	1 cut(s)	1007
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	5 cut(s)	66, 230, 560, 842, 969
MaeII	ACGT	2 cut(s)	837, 863
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	3 cut(s)	140, 153, 1044
MboI	GATC	3 cut(s)	138, 151, 1042
MfeI	CAATTG	1 cut(s)	888
MhlI	GDGCHC	2 cut(s)	296, 727
MluCI	AATT	5 cut(s)	77, 191, 888, 1035, 1076
MmeI	TCCRAC	2 cut(s)	285, 499
MseI	TTAA	2 cut(s)	1002, 1086
MslI	CAYNNNNRTG	2 cut(s)	182, 714
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	3 cut(s)	235, 381, 684
MunI	CAATTG	1 cut(s)	888
MvaI	CCWGG	2 cut(s)	235, 381
MwoI	GCNNNNNNNGC	2 cut(s)	193, 644
NciI	CCSGG	1 cut(s)	684
NcoI	CCATGG	2 cut(s)	283, 348
NdeII	GATC	3 cut(s)	138, 151, 1042
NheI	GCTAGC	1 cut(s)	559
NlaIII	CATG	6 cut(s)	161, 187, 287, 352, 568, 1058
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	1 cut(s)	616
NspI	RCATGY	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	630
PaqCI	CACCTGC	1 cut(s)	1000
PciSI	GCTCTTC	2 cut(s)	29, 301
PfeI	GAWTC	2 cut(s)	206, 221
PkrI	GCNGC	1 cut(s)	997
PsiI	TTATAA	1 cut(s)	851
Psp124BI	GAGCTC	2 cut(s)	296, 727
Psp6I	CCWGG	2 cut(s)	233, 379
PspFI	CCCAGC	1 cut(s)	961
PspGI	CCWGG	2 cut(s)	233, 379
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	1 cut(s)	959
PstI	CTGCAG	1 cut(s)	997
RsaI	GTAC	2 cut(s)	44, 84
RsaNI	GTAC	2 cut(s)	43, 83
RseI	CAYNNNNRTG	2 cut(s)	182, 714
SacI	GAGCTC	2 cut(s)	296, 727
SapI	GCTCTTC	2 cut(s)	29, 301
SaqAI	TTAA	2 cut(s)	1002, 1086
SatI	GCNGC	1 cut(s)	996
Sau3AI	GATC	3 cut(s)	138, 151, 1042
Sau96I	GGNCC	1 cut(s)	959
ScrFI	CCNGG	3 cut(s)	235, 381, 684
SduI	GDGCHC	2 cut(s)	296, 727
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	2 cut(s)	528, 993
SfuI	TTCGAA	1 cut(s)	630
SmiMI	CAYNNNNRTG	2 cut(s)	182, 714
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	5 cut(s)	77, 191, 888, 1035, 1076
SsiI	CCGC	1 cut(s)	647
SspI	AATATT	3 cut(s)	366, 829, 1025
SspMI	CTAG	5 cut(s)	66, 230, 560, 842, 969
SstI	GAGCTC	2 cut(s)	296, 727
StyD4I	CCNGG	3 cut(s)	233, 379, 682
StyI	CCWWGG	2 cut(s)	283, 348
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	2 cut(s)	840, 866
TaqI	TCGA	2 cut(s)	435, 630
TaqII	GACCGA	1 cut(s)	686
TasI	AATT	5 cut(s)	77, 191, 888, 1035, 1076
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	206, 221
Tru1I	TTAA	2 cut(s)	1002, 1086
Tru9I	TTAA	2 cut(s)	1002, 1086
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	1 cut(s)	995
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	4 cut(s)	329, 627, 765, 1043
TspGWI	ACGGA	1 cut(s)	660
XbaI	TCTAGA	1 cut(s)	841
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	5 cut(s)	66, 230, 560, 842, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.