Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

8881801 .. 8884975

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G155100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAAGAAAAGAGATCCGGGAGCTTATACGGTGGATCTCTTATTGTGCCTAGTGTTCAAGAATTAGCCAAGAAGCCTATAACCGCCATCCCAGCTAGATACATACAGACTCGTCATCATGAACAACAAGACGATGTCATGTTCAATCCTGATCATGGTCAAGCTGAAATACCATTCATCGACATGCAGAAGCTGCTTTCTCAAGAATCGACTGATTCCGAATCTGAGTTAGCTATGCTCCATTTTGCTTGCAAAGAGTGGGGTTTCTTTCAGTTGGTAAACCATGGTGTGAGCTCTTCCTTGATGGACAAAGTAAAGATAGAAATTCAAGACTTCTTCAACCTAGCCATGGAAGATAAGAAAAAGCTTTGGCAAACCCCAGGAGACTTGGAAGGTTTTGGACAAGCCTTTGTAGTTTCAGAAGACCAAAAACTCGATTGGGCTGACATTTTCTTCATGACCACCCTTCCAGTCGAAATGAGGCGGCCTCACCTATTCCCAAACCTCCCTTCTCCTTTCAGAGAGACCTTAGAAGTTTACTCATTGGAACTGAAGAACCTAGCCTTGACTATCCTATCACAAATGGAAACTGCTTTGCAAATGGAAGCCAAGGAACTGACCAAGTTATTTGAAGATGGAATGCAATCAATGAGGATGAACTATTACCCTCCATGTCCTCTTCCGGCGGAAGTCATCGGTCTTACACCTCATTCTGATTCTGTAGGTCTCACCATCCTCCTACAAGTGAATGAAATGGATGGTCTCCAAGTAAAGAAAGATGGGATTTGGGTTCCTGTTAAGCCACTACCAGATGCCTTTATTGTCAACATTGGAGACATTTTAGAGATTCAAACAAATGGGATTTATCGAAGCATTGAGCATCGTGCAACAGTTAACTCTGTAAAAGAACGGCTGTCAATCGCCACATTTCACAACCCAGCACTTGATGTTGAAATTGGTCCGGCTAGCTTGGTCACTGAGCAAACACCTGCAGTATATAAAAGGGTGGGAGTTCAAGATTATGTGAAAGCCCTTTTTGAACGTAAGCTTCAAGGAAAGTCTTTTCTTGAAGAACTTAGGATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

363

Amino Acids

41.08

Weight (kDa)

5.12

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	997
Acc36I	ACCTGC	1 cut(s)	997
AciI	CCGC	3 cut(s)	84, 484, 686
AclWI	GGATC	2 cut(s)	9, 43
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	572
AfiI	CCNNNNNNNGG	2 cut(s)	155, 349
AjnI	CCWGG	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AluBI	AGCT	9 cut(s)	24, 95, 164, 193, 233, 294, 367, 969, 1048
AluI	AGCT	9 cut(s)	24, 95, 164, 193, 233, 294, 367, 969, 1048
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	5 cut(s)	378, 518, 731, 767, 828
AlwI	GGATC	2 cut(s)	9, 43
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	1 cut(s)	485
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	959
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	482, 721
AsuNHI	GCTAGC	1 cut(s)	965
AvaII	GGWCC	1 cut(s)	959
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	6 cut(s)	95, 298, 629, 740, 752, 773
BceAI	ACGGC	1 cut(s)	926
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	5 cut(s)	378, 518, 731, 767, 828
BfaI	CTAG	5 cut(s)	51, 96, 344, 560, 966
BfmI	CTRYAG	2 cut(s)	720, 990
BfuAI	ACCTGC	1 cut(s)	997
BisI	GCNGC	2 cut(s)	194, 485
BlsI	GCNGC	2 cut(s)	195, 486
Bme1390I	CCNGG	2 cut(s)	19, 381
Bme18I	GGWCC	1 cut(s)	959
BmgT120I	GGNCC	1 cut(s)	959
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	2 cut(s)	19, 381
BmsI	GCATC	2 cut(s)	802, 889
BmtI	GCTAGC	1 cut(s)	969
BpiI	GAAGAC	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	19
BsaI	GGTCTC	3 cut(s)	518, 731, 767
BsaJI	CCNNGG	4 cut(s)	283, 348, 379, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 349
Bse1I	ACTGG	1 cut(s)	470
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	4 cut(s)	283, 348, 379, 609
BseGI	GGATG	4 cut(s)	87, 660, 732, 763
BseLI	CCNNNNNNNGG	2 cut(s)	155, 349
BseMII	CTCAG	2 cut(s)	216, 969
BseNI	ACTGG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	180
BseYI	CCCAGC	2 cut(s)	91, 937
BshFI	GGCC	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	3 cut(s)	18, 683, 962
BslI	CCNNNNNNNGG	2 cut(s)	155, 349
BsmAI	GTCTC	5 cut(s)	378, 518, 731, 767, 828
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	1 cut(s)	487
Bso31I	GGTCTC	3 cut(s)	518, 731, 767
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	14, 35, 151
Bsp19I	CCATGG	2 cut(s)	283, 348
BspACI	CCGC	3 cut(s)	84, 484, 686
BspANI	GGCC	1 cut(s)	487
BspCNI	CTCAG	2 cut(s)	217, 970
BspHI	TCATGA	2 cut(s)	118, 456
BspLI	GGNNCC	1 cut(s)	792
BspMAI	CTGCAG	1 cut(s)	994
BspMI	ACCTGC	1 cut(s)	997
BspOI	GCTAGC	1 cut(s)	969
BspPI	GGATC	2 cut(s)	9, 43
BspQI	GCTCTTC	1 cut(s)	301
BspTNI	GGTCTC	3 cut(s)	518, 731, 767
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	4 cut(s)	283, 348, 379, 609
BssMI	GATC	3 cut(s)	14, 35, 151
BssT1I	CCWWGG	3 cut(s)	283, 348, 609
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	32, 892
Bst6I	CTCTTC	2 cut(s)	301, 684
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	250, 967
BstDEI	CTNAG	4 cut(s)	225, 529, 978, 1076
BstDSI	CCRYGG	2 cut(s)	283, 348
BstF5I	GGATG	4 cut(s)	87, 660, 732, 763
BstKTI	GATC	3 cut(s)	17, 38, 154
BstMAI	GTCTC	5 cut(s)	378, 518, 731, 767, 828
BstMBI	GATC	3 cut(s)	14, 35, 151
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 193
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	17, 379
BstSFI	CTRYAG	2 cut(s)	720, 990
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	14, 35
BstYI	RGATCY	2 cut(s)	14, 35
BsuRI	GGCC	1 cut(s)	487
BtgI	CCRYGG	2 cut(s)	283, 348
BtsCI	GGATG	4 cut(s)	87, 660, 732, 763
BtsIMutI	CAGTG	1 cut(s)	975
BveI	ACCTGC	1 cut(s)	997
Cac8I	GCNNGC	2 cut(s)	250, 967
CaiI	CAGNNNCTG	1 cut(s)	193
CciI	TCATGA	2 cut(s)	118, 456
Cfr13I	GGNCC	1 cut(s)	959
CviAII	CATG	8 cut(s)	119, 139, 155, 184, 284, 349, 457, 672
DdeI	CTNAG	4 cut(s)	225, 529, 978, 1076
DpnI	GATC	3 cut(s)	16, 37, 153
DpnII	GATC	3 cut(s)	14, 35, 151
Eam1104I	CTCTTC	2 cut(s)	301, 684
EarI	CTCTTC	2 cut(s)	301, 684
EciI	GGCGGA	1 cut(s)	701
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	3 cut(s)	283, 348, 609
Eco24I	GRGCYC	1 cut(s)	296
Eco31I	GGTCTC	3 cut(s)	518, 731, 767
Eco47I	GGWCC	1 cut(s)	959
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	572
EcoICRI	GAGCTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	3 cut(s)	283, 348, 609
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	3 cut(s)	283, 348, 609
FaeI	CATG	8 cut(s)	122, 142, 158, 187, 287, 352, 460, 675
FatI	CATG	8 cut(s)	118, 138, 154, 183, 283, 348, 456, 671
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	194, 485
FokI	GGATG	4 cut(s)	74, 667, 719, 770
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	194, 485
FspBI	CTAG	5 cut(s)	51, 96, 344, 560, 966
GluI	GCNGC	2 cut(s)	194, 485
GsaI	CCCAGC	2 cut(s)	95, 941
HaeIII	GGCC	1 cut(s)	487
HapII	CCGG	3 cut(s)	18, 683, 962
Hin1II	CATG	8 cut(s)	122, 142, 158, 187, 287, 352, 460, 675
HincII	GTYRAC	2 cut(s)	826, 895
HindII	GTYRAC	2 cut(s)	826, 895
HindIII	AAGCTT	2 cut(s)	365, 1046
HinfI	GANTC	6 cut(s)	109, 206, 215, 221, 716, 847
HpaI	GTTAAC	1 cut(s)	895
HpaII	CCGG	3 cut(s)	18, 683, 962
HphI	GGTGA	2 cut(s)	482, 721
Hpy166II	GTNNAC	4 cut(s)	280, 538, 826, 895
Hpy188I	TCNGA	5 cut(s)	220, 226, 421, 521, 715
Hpy188III	TCNNGA	8 cut(s)	59, 119, 149, 203, 329, 457, 1016, 1067
Hpy8I	GTNNAC	4 cut(s)	280, 538, 826, 895
HpyAV	CCTTC	3 cut(s)	386, 476, 519
HpyCH4III	ACNGT	2 cut(s)	32, 892
HpyCH4IV	ACGT	1 cut(s)	1042
HpyCH4V	TGCA	6 cut(s)	187, 252, 598, 643, 887, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 193
HpyF3I	CTNAG	4 cut(s)	225, 529, 978, 1076
HpySE526I	ACGT	1 cut(s)	1042
Hsp92II	CATG	8 cut(s)	122, 142, 158, 187, 287, 352, 460, 675
Ksp22I	TGATCA	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	895
Kzo9I	GATC	3 cut(s)	14, 35, 151
LguI	GCTCTTC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	21, 243
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	2 cut(s)	802, 889
MaeI	CTAG	5 cut(s)	51, 96, 344, 560, 966
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	1 cut(s)	973
MalI	GATC	3 cut(s)	16, 37, 153
MboI	GATC	3 cut(s)	14, 35, 151
MflI	RGATCY	2 cut(s)	14, 35
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	3 cut(s)	62, 324, 954
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	8 cut(s)	474, 498, 515, 645, 678, 687, 717, 746
MseI	TTAA	2 cut(s)	798, 894
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	3 cut(s)	18, 683, 962
MspR9I	CCNGG	2 cut(s)	19, 381
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	92, 193
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	2 cut(s)	283, 348
NdeII	GATC	3 cut(s)	14, 35, 151
NheI	GCTAGC	1 cut(s)	965
NlaIII	CATG	8 cut(s)	122, 142, 158, 187, 287, 352, 460, 675
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	1 cut(s)	973
NspI	RCATGY	1 cut(s)	187
PagI	TCATGA	2 cut(s)	118, 456
PaqCI	CACCTGC	1 cut(s)	997
PciSI	GCTCTTC	1 cut(s)	301
PctI	GAATGC	1 cut(s)	645
PfeI	GAWTC	5 cut(s)	206, 215, 221, 716, 847
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	195, 486
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	2 cut(s)	91, 937
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	1 cut(s)	959
PstI	CTGCAG	1 cut(s)	994
PstNI	CAGNNNCTG	1 cut(s)	193
PsuI	RGATCY	2 cut(s)	14, 35
PsyI	GACNNNGTC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	798, 894
SatI	GCNGC	2 cut(s)	194, 485
Sau3AI	GATC	3 cut(s)	14, 35, 151
Sau96I	GGNCC	1 cut(s)	959
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	19, 381
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	2 cut(s)	802, 889
SfcI	CTRYAG	2 cut(s)	720, 990
SinI	GGWCC	1 cut(s)	959
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	3 cut(s)	62, 324, 954
SsiI	CCGC	3 cut(s)	84, 484, 686
SspMI	CTAG	5 cut(s)	51, 96, 344, 560, 966
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	17, 379
StyI	CCWWGG	3 cut(s)	283, 348, 609
TaaI	ACNGT	2 cut(s)	32, 892
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	5 cut(s)	180, 209, 435, 474, 868
TaqII	GACCGA	1 cut(s)	686
TasI	AATT	3 cut(s)	62, 324, 954
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	5 cut(s)	206, 215, 221, 716, 847
Tru1I	TTAA	2 cut(s)	798, 894
Tru9I	TTAA	2 cut(s)	798, 894
TscAI	CASTG	1 cut(s)	982
TseFI	GTSAC	1 cut(s)	973
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	973
TspDTI	ATGAA	5 cut(s)	135, 166, 445, 671, 765
TspRI	CASTG	1 cut(s)	982
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	959
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	5 cut(s)	51, 96, 344, 560, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.