Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

26957764 .. 26964004

Gene Structure 6241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCTAAGTATGGAAGAAAAGGCATTTGCAGGGAAGAGCTTGTACGGTGGTTCTCTTCCTGTTCCTAGTGTTCAAGAATTAGTACAGAAGCCAATACTCACAATCCCACCCAGATACGTACAGCCTCTTCATCAAGAGATCATCAGTTCTGATCATCATGCTCATCAAATACCATCCATTGACATGCAGATATTGATTTCCCAAGAATCAACCATTTCTGAATCTGAACTAGCCAGGCTCCATTTTGCTTGCCAAGAGTGGGGTTTCTTTCAGTTGGTAAACCATGGTGTGAGCTCTTCCTTGTTGGAGAAAATGAAGACAGAAACTCAAGAGTTCTTCAACCTACCCATGGAAGAGAAGAAAAAATTTTCGCAACAGCCAGGAGACATTGAAGGTTTTGGACAAAATTTTGTAGTTTCTGAAGACCAAAAACTCGATTGGGCTGACACTTTCGTCTTGACCACCCTTCCTGCCCAACTGAGGAGGCCTCATCTACTCCCAAAACTCCCTTCTCCTTTCAGAGAGACTTTAGAAACTTACTCATTGGAACTGAAAAACCTAGCCATGACTATCCTATCACAAATGGAAAAAGCTTTGCAGATGGAAACCAACGAAGCGACCAACATATTCGAAGGTGCATTGCAAGCGGTGAGGGTGAACTATTACCCTCCGTGTCCTCAGCCGGGGAAAGTCCTCGGTCTAACCCCTCACTCTGATGGTGCAGCTCTCACCATCCTCCTACAAGTCAATGAAATGGATGGCCTCCAAGTAAAGAAAGATGGGATTTGGGTTCCTGTGAAGCCACTACCGGATGCATTTATTGTGAATATTGGAGACGTTCTAGAGATTATAACAAATGGGACGTATCGTAGCATTGAACATCGTGCAACTGTGAACTCTGAAAAAGAAAGGCTCTCAATCGCCACATTTTACAACCCCGGAGTTGATGGTGAAATATGCCCGGCCTCTAGCTCGATCACTGAGCAAACACCTGCAGCATTTAAAAGGCTGAGTGTTAAAGAATATTTCAAAGCATTTTTTCAACGTAAGCTTCATGGAAAATCTTTTCTTGACGAGTTGAGGATTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

40.85

Weight (kDa)

5.64

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	57 - 167	9.8e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 313	2.4e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	851
AarI	CACCTGC	1 cut(s)	1000
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	1000
AciI	CCGC	1 cut(s)	647
AcsI	RAATTY	2 cut(s)	365, 406
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	3 cut(s)	44, 84, 120
AfiI	CCNNNNNNNGG	4 cut(s)	259, 349, 480, 683
AgsI	TTSAA	6 cut(s)	74, 340, 392, 878, 1030, 1043
AjnI	CCWGG	2 cut(s)	233, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AluBI	AGCT	6 cut(s)	39, 294, 593, 725, 972, 1051
AluI	AGCT	6 cut(s)	39, 294, 593, 725, 972, 1051
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	3 cut(s)	378, 518, 828
AoxI	GGCC	3 cut(s)	485, 760, 963
ApeKI	GCWGC	2 cut(s)	722, 995
ApoI	RAATTY	2 cut(s)	365, 406
AsuC2I	CCSGG	3 cut(s)	684, 939, 962
AsuHPI	GGTGA	4 cut(s)	661, 667, 721, 962
AsuII	TTCGAA	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	296
BarI	GAAGNNNNNNTAC	4 cut(s)	26, 58, 111, 143
BbsI	GAAGAC	2 cut(s)	323, 429
Bbv12I	GWGCWC	1 cut(s)	296
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	2 cut(s)	734, 1007
BccI	CCATC	7 cut(s)	181, 595, 710, 740, 752, 773, 941
BciT130I	CCWGG	2 cut(s)	235, 381
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	3 cut(s)	684, 939, 962
BcoDI	GTCTC	3 cut(s)	378, 518, 828
BfaI	CTAG	5 cut(s)	66, 230, 560, 842, 969
BfmI	CTRYAG	1 cut(s)	993
BfuAI	ACCTGC	1 cut(s)	1000
BisI	GCNGC	2 cut(s)	723, 996
BlsI	GCNGC	2 cut(s)	724, 997
Bme1390I	CCNGG	5 cut(s)	235, 381, 684, 939, 962
BmiI	GGNNCC	2 cut(s)	239, 792
BmrFI	CCNGG	5 cut(s)	235, 381, 684, 939, 962
BmsI	GCATC	1 cut(s)	802
BpiI	GAAGAC	2 cut(s)	323, 429
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	3 cut(s)	684, 939, 962
BsaAI	YACGTR	1 cut(s)	118
BsaJI	CCNNGG	5 cut(s)	283, 348, 683, 694, 937
BsaWI	WCCGGW	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	4 cut(s)	259, 349, 480, 683
Bse3DI	GCAATG	1 cut(s)	638
BseBI	CCWGG	2 cut(s)	235, 381
BseDI	CCNNGG	5 cut(s)	283, 348, 683, 694, 937
BseGI	GGATG	4 cut(s)	173, 732, 763, 817
BseLI	CCNNNNNNNGG	4 cut(s)	259, 349, 480, 683
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	4 cut(s)	470, 692, 972, 1001
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	2 cut(s)	734, 1007
BsgI	GTGCAG	1 cut(s)	741
BshFI	GGCC	3 cut(s)	487, 762, 965
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	4 cut(s)	683, 809, 939, 962
BslFI	GGGAC	1 cut(s)	874
BslI	CCNNNNNNNGG	4 cut(s)	259, 349, 480, 683
BsmAI	GTCTC	3 cut(s)	378, 518, 828
BsmBI	CGTCTC	1 cut(s)	828
BsmFI	GGGAC	1 cut(s)	874
BsnI	GGCC	3 cut(s)	487, 762, 965
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	138, 151, 975
Bsp19I	CCATGG	2 cut(s)	283, 348
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	3 cut(s)	487, 762, 965
BspCNI	CTCAG	4 cut(s)	471, 691, 973, 1002
BspLI	GGNNCC	2 cut(s)	239, 792
BspMAI	CTGCAG	1 cut(s)	997
BspMI	ACCTGC	1 cut(s)	1000
BspQI	GCTCTTC	2 cut(s)	29, 301
BspT104I	TTCGAA	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	638
BssECI	CCNNGG	5 cut(s)	283, 348, 683, 694, 937
BssMI	GATC	3 cut(s)	138, 151, 975
BssT1I	CCWWGG	2 cut(s)	283, 348
Bst2UI	CCWGG	2 cut(s)	235, 381
Bst4CI	ACNGT	2 cut(s)	47, 892
Bst6I	CTCTTC	5 cut(s)	29, 60, 132, 301, 348
BstBAI	YACGTR	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	630
BstC8I	GCNNGC	2 cut(s)	250, 645
BstDEI	CTNAG	5 cut(s)	5, 479, 678, 981, 1010
BstDSI	CCRYGG	2 cut(s)	283, 348
BstF5I	GGATG	4 cut(s)	173, 732, 763, 817
BstKTI	GATC	3 cut(s)	141, 154, 978
BstMAI	GTCTC	3 cut(s)	378, 518, 828
BstMBI	GATC	3 cut(s)	138, 151, 975
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	2 cut(s)	235, 381
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	5 cut(s)	233, 379, 682, 937, 960
BstSFI	CTRYAG	1 cut(s)	993
BstSNI	TACGTA	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	734, 1007
BstV2I	GAAGAC	2 cut(s)	323, 429
BsuRI	GGCC	3 cut(s)	487, 762, 965
BtgI	CCRYGG	2 cut(s)	283, 348
BtsCI	GGATG	4 cut(s)	173, 732, 763, 817
BtsIMutI	CAGTG	1 cut(s)	978
BveI	ACCTGC	1 cut(s)	1000
Cac8I	GCNNGC	2 cut(s)	250, 645
Csp6I	GTAC	3 cut(s)	43, 83, 119
CviAII	CATG	6 cut(s)	158, 184, 284, 349, 565, 1055
CviQI	GTAC	3 cut(s)	43, 83, 119
DdeI	CTNAG	5 cut(s)	5, 479, 678, 981, 1010
DpnI	GATC	3 cut(s)	140, 153, 977
DpnII	GATC	3 cut(s)	138, 151, 975
DraI	TTTAAA	1 cut(s)	1003
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
Eam1104I	CTCTTC	5 cut(s)	29, 60, 132, 301, 348
EarI	CTCTTC	5 cut(s)	29, 60, 132, 301, 348
Ecl136II	GAGCTC	1 cut(s)	294
Eco105I	TACGTA	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	283, 348
Eco147I	AGGCCT	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	294
EcoRII	CCWGG	2 cut(s)	233, 379
EcoT14I	CCWWGG	2 cut(s)	283, 348
EcoT22I	ATGCAT	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	283, 348
Esp3I	CGTCTC	1 cut(s)	828
FaeI	CATG	6 cut(s)	161, 187, 287, 352, 568, 1058
FaqI	GGGAC	1 cut(s)	874
FatI	CATG	6 cut(s)	157, 183, 283, 348, 564, 1054
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	723, 996
FokI	GGATG	4 cut(s)	160, 719, 770, 824
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	723, 996
FspBI	CTAG	5 cut(s)	66, 230, 560, 842, 969
GluI	GCNGC	2 cut(s)	723, 996
HaeIII	GGCC	3 cut(s)	487, 762, 965
HapII	CCGG	4 cut(s)	683, 809, 939, 962
Hin1II	CATG	6 cut(s)	161, 187, 287, 352, 568, 1058
HindIII	AAGCTT	2 cut(s)	591, 1049
HinfI	GANTC	2 cut(s)	206, 221
HpaII	CCGG	4 cut(s)	683, 809, 939, 962
HphI	GGTGA	4 cut(s)	661, 667, 721, 962
Hpy166II	GTNNAC	3 cut(s)	280, 658, 895
Hpy188I	TCNGA	7 cut(s)	151, 220, 226, 421, 521, 715, 901
Hpy188III	TCNNGA	6 cut(s)	74, 134, 329, 457, 842, 1070
Hpy8I	GTNNAC	3 cut(s)	280, 658, 895
HpyAV	CCTTC	4 cut(s)	386, 476, 519, 626
HpyCH4III	ACNGT	2 cut(s)	47, 892
HpyCH4IV	ACGT	4 cut(s)	117, 837, 863, 1045
HpyCH4V	TGCA	9 cut(s)	29, 187, 598, 638, 643, 722, 815, 887, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	5 cut(s)	5, 479, 678, 981, 1010
HpySE526I	ACGT	4 cut(s)	117, 837, 863, 1045
Hsp92II	CATG	6 cut(s)	161, 187, 287, 352, 568, 1058
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	138, 151, 975
LguI	GCTCTTC	2 cut(s)	29, 301
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	2 cut(s)	734, 1007
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	5 cut(s)	66, 230, 560, 842, 969
MaeII	ACGT	4 cut(s)	117, 837, 863, 1045
MalI	GATC	3 cut(s)	140, 153, 977
MboI	GATC	3 cut(s)	138, 151, 975
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	3 cut(s)	77, 365, 406
MmeI	TCCRAC	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	817
MseI	TTAA	3 cut(s)	1002, 1017, 1086
MslI	CAYNNNNRTG	2 cut(s)	182, 714
MspI	CCGG	4 cut(s)	683, 809, 939, 962
MspR9I	CCNGG	5 cut(s)	235, 381, 684, 939, 962
MvaI	CCWGG	2 cut(s)	235, 381
MwoI	GCNNNNNNNGC	1 cut(s)	644
NciI	CCSGG	3 cut(s)	684, 939, 962
NcoI	CCATGG	2 cut(s)	283, 348
NdeII	GATC	3 cut(s)	138, 151, 975
NlaIII	CATG	6 cut(s)	161, 187, 287, 352, 568, 1058
NlaIV	GGNNCC	2 cut(s)	239, 792
NsiI	ATGCAT	1 cut(s)	817
NspI	RCATGY	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	630
PaqCI	CACCTGC	1 cut(s)	1000
PceI	AGGCCT	1 cut(s)	487
PciSI	GCTCTTC	2 cut(s)	29, 301
PfeI	GAWTC	2 cut(s)	206, 221
PkrI	GCNGC	2 cut(s)	724, 997
Ppu21I	YACGTR	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	851
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	2 cut(s)	233, 379
PspGI	CCWGG	2 cut(s)	233, 379
PspN4I	GGNNCC	2 cut(s)	239, 792
PstI	CTGCAG	1 cut(s)	997
RsaI	GTAC	3 cut(s)	44, 84, 120
RsaNI	GTAC	3 cut(s)	43, 83, 119
RseI	CAYNNNNRTG	2 cut(s)	182, 714
SacI	GAGCTC	1 cut(s)	296
SapI	GCTCTTC	2 cut(s)	29, 301
SaqAI	TTAA	3 cut(s)	1002, 1017, 1086
SatI	GCNGC	2 cut(s)	723, 996
Sau3AI	GATC	3 cut(s)	138, 151, 975
ScrFI	CCNGG	5 cut(s)	235, 381, 684, 939, 962
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	993
SfuI	TTCGAA	1 cut(s)	630
SmiMI	CAYNNNNRTG	2 cut(s)	182, 714
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SnaBI	TACGTA	1 cut(s)	118
Sse9I	AATT	3 cut(s)	77, 365, 406
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	1 cut(s)	647
SspI	AATATT	2 cut(s)	829, 1025
SspMI	CTAG	5 cut(s)	66, 230, 560, 842, 969
SstI	GAGCTC	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	5 cut(s)	233, 379, 682, 937, 960
StyI	CCWWGG	2 cut(s)	283, 348
TaaI	ACNGT	2 cut(s)	47, 892
TaiI	ACGT	4 cut(s)	120, 840, 866, 1048
TaqI	TCGA	3 cut(s)	435, 630, 974
TaqII	GACCGA	1 cut(s)	686
TasI	AATT	3 cut(s)	77, 365, 406
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	206, 221
Tru1I	TTAA	3 cut(s)	1002, 1017, 1086
Tru9I	TTAA	3 cut(s)	1002, 1017, 1086
TscAI	CASTG	1 cut(s)	985
TseI	GCWGC	2 cut(s)	722, 995
TspDTI	ATGAA	4 cut(s)	119, 329, 765, 1043
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	1 cut(s)	985
XapI	RAATTY	2 cut(s)	365, 406
XbaI	TCTAGA	1 cut(s)	841
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	5 cut(s)	66, 230, 560, 842, 969
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.