Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

23908557 .. 23911798

Gene Structure 3242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGAAAAAGGAAGATAGCAGCAGCTGGGTGTATGGTGGTTCTCATCTTGTTCCTTGTGTTCAAGAATTAGCTAAAAATCCCATAACCACCATCCCACCGAGATACCTACAGCAAGATTACAATGATGATGATGCTCAAGACCAACTCAACAAGATCAATACCAATGAGATGCGCAGTTCTGTACAACCTGAAATACCATTCATTGACTTCAAGAAACTGCTCTCCCAGCAAGAATCAAACAATTTTGATGAACTATCTAGGCTCCACTTAGCCTGCAAAGAGTGGGGTTTCTTCCAGCTGGTAAACCATGGTGTGAGCTCTTCTTTGATGGAGAAAATGAAGACAGAAATTCAAGACTTCTTCAACCTCCCGATAGAGGAGAAGAAAAGGTTGTGGCAGCATCCAGGAGACGTGGAGGGTTTTGGACAGGCCTTTGTCGTTTCTGAAGAGCAAAAACTTGATTGGGCTGACATTTTCTTCCTCACCACCCTTCCTGTCCAGATGAGGAAGCCTCACTTATTCCCGGAGCTCCCCACTCCTTTCAAAGACACCTTGGAGATTTACTCAATGGAATTGGAAAACCTAGCCATGGCTATCCTAACCCAAATGGAAAATGCTTTAAAAATTGAAGCCAAGGAATTGACCAAGTCGTTTGTAGGTGGAATGCAATCCATGAGGATGAACTATTATCCTCCATGTCCACAGCCGGAGAAGGTCACCGGCCTTACTCCTCATTCGGACGCCGTAGGTCTAACCATCCTCCTGCAAGTCAATGAAATGGAAGGTCTCCAAGTCAAGAAGGATGGGATTTGGTTTCCTGTTAAGCCACTTCCAGATGCCTTCATTAATTGTCAACGTTGGAGACATTTTAGAGGTAATCAAATTCAAACAAATGGAACTTATCGTAGCATCGAGCATCGAGCAATTGTCAACTCTAAAAAAGAAAGACTGTCAATCGCGACATTTTACAGCCCGAGACTTGATGGCGAAATTTGTCCTGCACCTAGCTTGATCACTGAAGAAAGACATGCTGCATATACAAGCATCGGAGTGCAAGATTTCTTCACTGCCTTATTTGCACGTAAGCTTCAAGGAAAATCCTTTCTTGATGATCTTAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

375

Amino Acids

43.17

Weight (kDa)

5.59

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	66 - 177	9.2e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	224 - 326	2.9e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1126
Acc16I	TGCGCA	1 cut(s)	176
AccII	CGCG	1 cut(s)	962
AclI	AACGTT	1 cut(s)	859
AcsI	RAATTY	3 cut(s)	351, 885, 993
AcuI	CTGAAG	2 cut(s)	468, 1041
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	2 cut(s)	379, 592
AgsI	TTSAA	8 cut(s)	65, 214, 356, 367, 547, 632, 890, 1094
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	7 cut(s)	27, 74, 301, 321, 532, 1011, 1090
AluI	AGCT	7 cut(s)	27, 74, 301, 321, 532, 1011, 1090
Alw21I	GWGCWC	2 cut(s)	323, 534
Alw26I	GTCTC	4 cut(s)	405, 794, 859, 973
AlwNI	CAGNNNCTG	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	976
AoxI	GGCC	2 cut(s)	432, 724
ApeKI	GCWGC	4 cut(s)	21, 24, 400, 1034
ApoI	RAATTY	3 cut(s)	351, 885, 993
AseI	ATTAAT	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	478, 712
AvaI	CYCGRG	1 cut(s)	976
BanII	GRGCYC	2 cut(s)	323, 534
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	323, 534
BbvI	GCAGC	4 cut(s)	33, 36, 412, 1021
BccI	CCATC	5 cut(s)	101, 325, 767, 800, 980
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	1 cut(s)	1014
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	4 cut(s)	405, 794, 859, 973
BfaI	CTAG	3 cut(s)	261, 587, 1008
BfmI	CTRYAG	1 cut(s)	110
BisI	GCNGC	4 cut(s)	22, 25, 401, 1035
BlsI	GCNGC	4 cut(s)	23, 26, 402, 1036
Bme1390I	CCNGG	2 cut(s)	408, 527
BmeT110I	CYCGRG	1 cut(s)	976
BmgBI	CACGTC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	408, 527
BmsI	GCATC	7 cut(s)	124, 162, 412, 829, 921, 928, 1056
BpiI	GAAGAC	1 cut(s)	350
BplI	GAGNNNNNCTC	4 cut(s)	499, 531, 551, 583
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	1085
BsaHI	GRCGYC	1 cut(s)	744
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	4 cut(s)	310, 555, 591, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 592
Bse118I	RCCGGY	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	4 cut(s)	310, 555, 591, 636
BseGI	GGATG	5 cut(s)	93, 403, 687, 759, 811
BseLI	CCNNNNNNNGG	2 cut(s)	379, 592
BseRI	GAGGAG	2 cut(s)	395, 723
BseXI	GCAGC	4 cut(s)	33, 36, 412, 1021
BseYI	CCCAGC	2 cut(s)	27, 228
BsgI	GTGCAG	1 cut(s)	987
Bsh1236I	CGCG	1 cut(s)	962
BshFI	GGCC	2 cut(s)	434, 726
BsiHKAI	GWGCWC	2 cut(s)	323, 534
BsiHKCI	CYCGRG	1 cut(s)	976
BsiSI	CCGG	3 cut(s)	527, 710, 723
BslI	CCNNNNNNNGG	2 cut(s)	379, 592
BsmAI	GTCTC	4 cut(s)	405, 794, 859, 973
BsmBI	CGTCTC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	2 cut(s)	434, 726
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	976
Bsp1286I	GDGCHC	2 cut(s)	323, 534
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	156, 1014, 1114
Bsp19I	CCATGG	2 cut(s)	310, 591
Bsp68I	TCGCGA	1 cut(s)	962
BspANI	GGCC	2 cut(s)	434, 726
BspFNI	CGCG	1 cut(s)	962
BspLI	GGNNCC	1 cut(s)	266
BspQI	GCTCTTC	2 cut(s)	328, 444
BspTNI	GGTCTC	1 cut(s)	794
BsrFI	RCCGGY	1 cut(s)	722
BsrGI	TGTACA	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	4 cut(s)	310, 555, 591, 636
BssMI	GATC	3 cut(s)	156, 1014, 1114
BssNI	GRCGYC	1 cut(s)	744
BssT1I	CCWWGG	4 cut(s)	310, 555, 591, 636
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	954
Bst6I	CTCTTC	2 cut(s)	328, 444
BstACI	GRCGYC	1 cut(s)	744
BstAUI	TGTACA	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	1085
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	271, 1118
BstDSI	CCRYGG	2 cut(s)	310, 591
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	5 cut(s)	93, 403, 687, 759, 811
BstFNI	CGCG	1 cut(s)	962
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	159, 1017, 1117
BstMAI	GTCTC	4 cut(s)	405, 794, 859, 973
BstMBI	GATC	3 cut(s)	156, 1014, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 1079
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	1034
BstPI	GGTNACC	1 cut(s)	718
BstSCI	CCNGG	2 cut(s)	406, 525
BstSFI	CTRYAG	1 cut(s)	110
BstUI	CGCG	1 cut(s)	962
BstV1I	GCAGC	4 cut(s)	33, 36, 412, 1021
BstV2I	GAAGAC	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	434, 726
BtgI	CCRYGG	2 cut(s)	310, 591
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	5 cut(s)	93, 403, 687, 759, 811
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	2 cut(s)	1017, 1068
BtuMI	TCGCGA	1 cut(s)	962
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	722
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	5 cut(s)	311, 592, 676, 699, 1031
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	2 cut(s)	271, 1118
DpnI	GATC	3 cut(s)	158, 1016, 1116
DpnII	GATC	3 cut(s)	156, 1014, 1114
DraI	TTTAAA	1 cut(s)	624
Eam1104I	CTCTTC	2 cut(s)	328, 444
EarI	CTCTTC	2 cut(s)	328, 444
Ecl136II	GAGCTC	2 cut(s)	321, 532
Eco130I	CCWWGG	4 cut(s)	310, 555, 591, 636
Eco147I	AGGCCT	1 cut(s)	434
Eco24I	GRGCYC	2 cut(s)	323, 534
Eco31I	GGTCTC	1 cut(s)	794
Eco53kI	GAGCTC	2 cut(s)	321, 532
Eco57I	CTGAAG	2 cut(s)	468, 1041
Eco88I	CYCGRG	1 cut(s)	976
Eco91I	GGTNACC	1 cut(s)	718
EcoICRI	GAGCTC	2 cut(s)	321, 532
EcoO65I	GGTNACC	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	4 cut(s)	310, 555, 591, 636
EcoT38I	GRGCYC	2 cut(s)	323, 534
ErhI	CCWWGG	4 cut(s)	310, 555, 591, 636
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	5 cut(s)	314, 595, 679, 702, 1034
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FatI	CATG	5 cut(s)	310, 591, 675, 698, 1030
FbaI	TGATCA	1 cut(s)	1014
Fnu4HI	GCNGC	4 cut(s)	22, 25, 401, 1035
FokI	GGATG	5 cut(s)	80, 390, 694, 746, 818
FriOI	GRGCYC	2 cut(s)	323, 534
Fsp4HI	GCNGC	4 cut(s)	22, 25, 401, 1035
FspBI	CTAG	3 cut(s)	261, 587, 1008
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	4 cut(s)	22, 25, 401, 1035
GsaI	CCCAGC	2 cut(s)	31, 232
HaeIII	GGCC	2 cut(s)	434, 726
HapII	CCGG	3 cut(s)	527, 710, 723
HgaI	GACGC	1 cut(s)	752
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	5 cut(s)	314, 595, 679, 702, 1034
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	2 cut(s)	857, 934
HindII	GTYRAC	2 cut(s)	857, 934
HindIII	AAGCTT	1 cut(s)	1088
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	3 cut(s)	527, 710, 723
HphI	GGTGA	2 cut(s)	478, 712
Hpy166II	GTNNAC	4 cut(s)	307, 704, 857, 934
Hpy188I	TCNGA	3 cut(s)	448, 742, 1052
Hpy8I	GTNNAC	4 cut(s)	307, 704, 857, 934
HpyAV	CCTTC	5 cut(s)	503, 709, 779, 796, 853
HpyCH4III	ACNGT	1 cut(s)	954
HpyCH4IV	ACGT	3 cut(s)	414, 859, 1084
HpyCH4V	TGCA	7 cut(s)	279, 670, 769, 1004, 1037, 1057, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 1079
HpyF3I	CTNAG	2 cut(s)	271, 1118
HpySE526I	ACGT	3 cut(s)	414, 859, 1084
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	5 cut(s)	314, 595, 679, 702, 1034
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	1014
Kzo9I	GATC	3 cut(s)	156, 1014, 1114
LguI	GCTCTTC	2 cut(s)	328, 444
LmnI	GCTCC	3 cut(s)	270, 529, 537
Lsp1109I	GCAGC	4 cut(s)	33, 36, 412, 1021
LweI	GCATC	7 cut(s)	124, 162, 412, 829, 921, 928, 1056
MaeI	CTAG	3 cut(s)	261, 587, 1008
MaeII	ACGT	3 cut(s)	414, 859, 1084
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	3 cut(s)	158, 1016, 1116
MboI	GATC	3 cut(s)	156, 1014, 1114
MfeI	CAATTG	1 cut(s)	927
MhlI	GDGCHC	2 cut(s)	323, 534
MmeI	TCCRAC	1 cut(s)	842
MseI	TTAA	3 cut(s)	623, 825, 849
MslI	CAYNNNNRTG	2 cut(s)	680, 1052
MspA1I	CMGCKG	2 cut(s)	27, 301
MspI	CCGG	3 cut(s)	527, 710, 723
MspR9I	CCNGG	2 cut(s)	408, 527
MunI	CAATTG	1 cut(s)	927
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	962
MwoI	GCNNNNNNNGC	2 cut(s)	229, 1079
NciI	CCSGG	1 cut(s)	527
NcoI	CCATGG	2 cut(s)	310, 591
NdeII	GATC	3 cut(s)	156, 1014, 1114
NlaIII	CATG	5 cut(s)	314, 595, 679, 702, 1034
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	718
NruI	TCGCGA	1 cut(s)	962
NsbI	TGCGCA	1 cut(s)	176
NspI	RCATGY	1 cut(s)	1034
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	2 cut(s)	328, 444
PctI	GAATGC	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	649
PfoI	TCCNGGA	2 cut(s)	406, 525
PkrI	GCNGC	4 cut(s)	23, 26, 402, 1036
Ppu21I	YACGTR	1 cut(s)	1085
PshBI	ATTAAT	1 cut(s)	849
PsiI	TTATAA	1 cut(s)	1126
Psp124BI	GAGCTC	2 cut(s)	323, 534
Psp1406I	AACGTT	1 cut(s)	859
Psp6I	CCWGG	1 cut(s)	406
PspEI	GGTNACC	1 cut(s)	718
PspFI	CCCAGC	2 cut(s)	27, 228
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	649
PvuII	CAGCTG	2 cut(s)	27, 301
RruI	TCGCGA	1 cut(s)	962
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	2 cut(s)	680, 1052
SacI	GAGCTC	2 cut(s)	323, 534
SapI	GCTCTTC	2 cut(s)	328, 444
SaqAI	TTAA	3 cut(s)	623, 825, 849
SatI	GCNGC	4 cut(s)	22, 25, 401, 1035
Sau3AI	GATC	3 cut(s)	156, 1014, 1114
ScrFI	CCNGG	2 cut(s)	408, 527
SduI	GDGCHC	2 cut(s)	323, 534
SfaNI	GCATC	7 cut(s)	124, 162, 412, 829, 921, 928, 1056
SfcI	CTRYAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	680, 1052
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SseBI	AGGCCT	1 cut(s)	434
SspMI	CTAG	3 cut(s)	261, 587, 1008
SstI	GAGCTC	2 cut(s)	323, 534
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	406, 525
StyI	CCWWGG	4 cut(s)	310, 555, 591, 636
TaaI	ACNGT	1 cut(s)	954
TaiI	ACGT	3 cut(s)	417, 862, 1087
TaqI	TCGA	2 cut(s)	915, 922
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	3 cut(s)	623, 825, 849
Tru9I	TTAA	3 cut(s)	623, 825, 849
TscAI	CASTG	2 cut(s)	1024, 1075
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	4 cut(s)	21, 24, 400, 1034
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	6 cut(s)	193, 267, 356, 698, 792, 835
TspRI	CASTG	2 cut(s)	1024, 1075
Tth111I	GACNNNGTC	1 cut(s)	649
VspI	ATTAAT	1 cut(s)	849
XapI	RAATTY	3 cut(s)	351, 885, 993
XceI	RCATGY	1 cut(s)	1034
XspI	CTAG	3 cut(s)	261, 587, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.