Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

38768627 .. 38769716

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1272100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACTATCCTATCACAAATGGAAAAAGCTTTGCAGATGGAAACCAATGAAGCGACCAACATATTCGAAGGTGCATTGCAAGCGGTGAGGGTGAACTATTACCCTCCGTGTCCTCAGCCGGGGAAAGTCCTCGGTCTGACCCCTCACTCTGATGGTGGAGCTCTCACCATCCTCCTACAAGTCAATGAAATGGATGGCCTCCAGGTAAAGAAAGATGGGATTTGGGTTCCTGTGAAGCCACTACCAGATGCCTTTATTGTGAATATTGGAGACGTTCTAGAGATTATAACAAATGGGACTTATCGTAGCATTGAACATCGTGCAACTGTGAACTCTGAAAAAGAAAGGCTCTCAATCGCCACATTTTACAACCCCGGAGTTGATGGTGAAATCTGCCCGGCCTCTAGCTTGATCACTGAGCAAACGCCTGCAGCATTTAAAAGGCTGAGTGTCAAAGAATATTTCAAAGCATTTTTTCAACGCAAGCTTCATGGAAAGTCTTTTCTTGACGAATTGAGGATTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

176

Amino Acids

19.48

Weight (kDa)

6.31

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	27 - 125	1.9e-35	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AciI	CCGC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	314, 466, 479
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	4 cut(s)	29, 161, 408, 487
AluI	AGCT	4 cut(s)	29, 161, 408, 487
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	264
AoxI	GGCC	2 cut(s)	196, 399
ApeKI	GCWGC	1 cut(s)	431
AsuC2I	CCSGG	3 cut(s)	120, 375, 398
AsuHPI	GGTGA	4 cut(s)	97, 103, 157, 398
AsuII	TTCGAA	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	6 cut(s)	31, 146, 176, 188, 209, 377
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	3 cut(s)	120, 375, 398
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	2 cut(s)	278, 405
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	4 cut(s)	120, 203, 375, 398
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	4 cut(s)	120, 203, 375, 398
BmsI	GCATC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	66
BpuMI	CCSGG	3 cut(s)	120, 375, 398
BsaJI	CCNNGG	3 cut(s)	119, 130, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	3 cut(s)	119, 130, 373
BseGI	GGATG	2 cut(s)	168, 199
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	3 cut(s)	128, 408, 437
BseXI	GCAGC	1 cut(s)	443
BshFI	GGCC	2 cut(s)	198, 401
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	119, 375, 398
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	264
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	198, 401
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	198, 401
BspCNI	CTCAG	3 cut(s)	127, 409, 438
BspLI	GGNNCC	1 cut(s)	228
BspMAI	CTGCAG	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	119, 130, 373
BssMI	GATC	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	328
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	3 cut(s)	81, 429, 485
BstDEI	CTNAG	3 cut(s)	114, 417, 446
BstF5I	GGATG	2 cut(s)	168, 199
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	4 cut(s)	118, 201, 373, 396
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	198, 401
BtsCI	GGATG	2 cut(s)	168, 199
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	3 cut(s)	81, 429, 485
CviAII	CATG	1 cut(s)	491
DdeI	CTNAG	3 cut(s)	114, 417, 446
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
DraI	TTTAAA	1 cut(s)	439
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	1 cut(s)	494
FaiI	YATR	3 cut(s)	62, 287, 492
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	1 cut(s)	490
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	2 cut(s)	155, 206
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	278, 405
GluI	GCNGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	198, 401
HapII	CCGG	3 cut(s)	119, 375, 398
Hin1II	CATG	1 cut(s)	494
HindIII	AAGCTT	2 cut(s)	27, 485
HpaII	CCGG	3 cut(s)	119, 375, 398
HphI	GGTGA	4 cut(s)	97, 103, 157, 398
Hpy166II	GTNNAC	2 cut(s)	94, 331
Hpy188I	TCNGA	3 cut(s)	138, 151, 337
Hpy188III	TCNNGA	2 cut(s)	278, 506
Hpy8I	GTNNAC	2 cut(s)	94, 331
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	34, 74, 79, 323, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	3 cut(s)	114, 417, 446
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	132, 188, 215, 243, 258, 388, 411, 441
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	278, 405
MaeII	ACGT	1 cut(s)	273
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	512
MnlI	CCTC	9 cut(s)	81, 114, 123, 140, 153, 182, 209, 412, 510
MseI	TTAA	2 cut(s)	438, 522
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	3 cut(s)	119, 375, 398
MspR9I	CCNGG	4 cut(s)	120, 203, 375, 398
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	3 cut(s)	120, 375, 398
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	433
PsiI	TTATAA	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	150
SacI	GAGCTC	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	438, 522
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	1 cut(s)	411
ScrFI	CCNGG	4 cut(s)	120, 203, 375, 398
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	7 cut(s)	31, 73, 163, 207, 276, 410, 489
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	512
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	2 cut(s)	265, 461
SspMI	CTAG	2 cut(s)	278, 405
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	4 cut(s)	118, 201, 373, 396
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	66
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	512
Tru1I	TTAA	2 cut(s)	438, 522
Tru9I	TTAA	2 cut(s)	438, 522
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	3 cut(s)	63, 201, 479
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	421
XbaI	TCTAGA	1 cut(s)	277
XspI	CTAG	2 cut(s)	278, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.