Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

11117672 .. 11119857

Gene Structure 2186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAAATAGTAAAGGAAGAGAGCAGCAGCTGGCTATGCTGTGTTTCTCATCTTGTTCCTTCTGTTCAAGAATTAGCCAAGAAGCCCATAACCACCCTTCCACCTAGATATATACAGCAAGATCTCCACGACGGTGATGCTCGAGACCAAGTGAACAAGATCGGTTCCAATGAAGCGAGCAGTTCTATACAACCTGAAATACCAACCATCAACTTCAAGAAACTGCTTTCTCGGAAAGAATCGAACAGTTTTCAAGATTCGGATGAATTGGCTAGGCTCCACTTGGCTTCAAAAGAGTGGGGTTTCTTCCAGTTGGTAAACCATGGCGTGAGCTCTTCTTTGTTGGAGAAGATTAAGACAGAAATTCAAGACTTCTTCAACCTCTCGATAGATGAGAAGAAACGGTTTTGGCAGCGTCCAGAAGACATGGAGGGTTTTGGACAACTCTTTGTCGTTTCTGAAGAGCAAAAACTTGATTGGGCTGACGTTTTCTTCATGACTACACTTCCTGTCCAGATGAGGAAACCTCACCTATTCCCGGAGCTCCCTAGTCCTTTCAAAGACACCTTGGAGATTTACTCCTTGGAACTGAATAACCTTGCCATGGCTATCCTTACACAAATGGAACATGCTTTGAAAGTTGATGCCAATGAATTGACCGAGTTATTTGAAGATGGAATGCAATCAATGAGAATGAACTATTACCCTCCATGTCCTCAGCCGGAGAAAGTCATCGGATTTACGCCTCATTCAGATGCCTCAGGCCTCACGATCCTCCTGCAAGTGAATGAATTGGAAGGTCTCCAAATCAAGAAGGATGGGAATTGGCTTCCTGTTAAGCCACTTCCTGAAGCGTTTATTGTCAACATTGGAGACGCTCTGGAGATTAAAACAAATGGGACTTATCGTAGCATTGAGCATCGAGCAATTGTAAACTCAGAGAAAGAAAGACTCTCAATCGCCACATTTTGCAACCCGAGAGTTGATGGTGAAATTGGACCAGCCTCTAGCTTGATCACTGAACAAACACCTGCTGCATATACAAGGATCGGAGTACAAGACTACACGAAAGCCTTTTTTGCCCGTAAGATTCAAGGAAAATCTTTTATTGATGATCTTAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

376

Amino Acids

42.59

Weight (kDa)

5.15

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	67 - 181	2.3e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	228 - 326	1.5e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1039
Acc36I	ACCTGC	1 cut(s)	1039
AclWI	GGATC	2 cut(s)	766, 1055
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	2 cut(s)	480, 870
AfaI	GTAC	1 cut(s)	1056
AfiI	CCNNNNNNNGG	2 cut(s)	538, 604
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	30, 333, 544, 1011
AluI	AGCT	4 cut(s)	30, 333, 544, 1011
Alw21I	GWGCWC	2 cut(s)	335, 546
Alw26I	GTCTC	3 cut(s)	138, 806, 867
AlwI	GGATC	2 cut(s)	766, 1055
AlwNI	CAGNNNCTG	1 cut(s)	30
Ama87I	CYCGRG	2 cut(s)	141, 976
AoxI	GGCC	1 cut(s)	763
ApeKI	GCWGC	4 cut(s)	24, 27, 412, 1034
ApoI	RAATTY	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	998
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	3 cut(s)	146, 521, 1001
AvaI	CYCGRG	2 cut(s)	141, 976
AvaII	GGWCC	1 cut(s)	998
AxyI	CCTNAGG	1 cut(s)	760
BanII	GRGCYC	2 cut(s)	335, 546
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	2 cut(s)	335, 546
BbvCI	CCTCAGC	1 cut(s)	717
BbvI	GCAGC	4 cut(s)	36, 39, 424, 1021
BccI	CCATC	4 cut(s)	215, 668, 812, 980
BcgI	CGANNNNNNTGC	4 cut(s)	119, 153, 760, 794
BclI	TGATCA	1 cut(s)	1014
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	3 cut(s)	138, 806, 867
BfaI	CTAG	4 cut(s)	105, 273, 549, 1008
BfuAI	ACCTGC	1 cut(s)	1039
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	4 cut(s)	25, 28, 413, 1035
BlsI	GCNGC	4 cut(s)	26, 29, 414, 1036
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	998
BmeT110I	CYCGRG	2 cut(s)	141, 976
BmgT120I	GGNCC	1 cut(s)	998
BmiI	GGNNCC	2 cut(s)	166, 278
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	4 cut(s)	127, 634, 745, 928
BpiI	GAAGAC	1 cut(s)	429
BplI	GAGNNNNNCTC	4 cut(s)	511, 543, 563, 595
BpmI	CTGGAG	1 cut(s)	902
Bpu10I	CCTNAGC	1 cut(s)	717
BpuMI	CCSGG	1 cut(s)	539
BsaI	GGTCTC	2 cut(s)	138, 806
BsaJI	CCNNGG	4 cut(s)	322, 567, 582, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 604
Bse1I	ACTGG	1 cut(s)	310
Bse21I	CCTNAGG	1 cut(s)	760
BseDI	CCNNGG	4 cut(s)	322, 567, 582, 603
BseGI	GGATG	2 cut(s)	268, 823
BseLI	CCNNNNNNNGG	2 cut(s)	538, 604
BseMII	CTCAG	3 cut(s)	731, 774, 951
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	4 cut(s)	36, 39, 424, 1021
BshFI	GGCC	1 cut(s)	765
BsiHKAI	GWGCWC	2 cut(s)	335, 546
BsiHKCI	CYCGRG	2 cut(s)	141, 976
BsiSI	CCGG	2 cut(s)	539, 722
BslFI	GGGAC	1 cut(s)	913
BslI	CCNNNNNNNGG	2 cut(s)	538, 604
BsmAI	GTCTC	3 cut(s)	138, 806, 867
BsmBI	CGTCTC	1 cut(s)	867
BsmFI	GGGAC	1 cut(s)	913
BsmI	GAATGC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	765
Bso31I	GGTCTC	2 cut(s)	138, 806
BsoBI	CYCGRG	2 cut(s)	141, 976
Bsp1286I	GDGCHC	2 cut(s)	335, 546
Bsp143I	GATC	6 cut(s)	121, 159, 771, 1014, 1047, 1114
Bsp19I	CCATGG	2 cut(s)	322, 603
BspANI	GGCC	1 cut(s)	765
BspCNI	CTCAG	3 cut(s)	730, 773, 950
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	166, 278
BspMI	ACCTGC	1 cut(s)	1039
BspPI	GGATC	2 cut(s)	766, 1055
BspQI	GCTCTTC	2 cut(s)	340, 456
BspTNI	GGTCTC	2 cut(s)	138, 806
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	4 cut(s)	322, 567, 582, 603
BssMI	GATC	6 cut(s)	121, 159, 771, 1014, 1047, 1114
BssT1I	CCWWGG	4 cut(s)	322, 567, 582, 603
Bst4CI	ACNGT	3 cut(s)	134, 248, 405
Bst6I	CTCTTC	3 cut(s)	12, 340, 456
BstC8I	GCNNGC	2 cut(s)	32, 178
BstDEI	CTNAG	3 cut(s)	717, 760, 937
BstDSI	CCRYGG	2 cut(s)	322, 603
BstF5I	GGATG	2 cut(s)	268, 823
BstKTI	GATC	6 cut(s)	124, 162, 774, 1017, 1050, 1117
BstMAI	GTCTC	3 cut(s)	138, 806, 867
BstMBI	GATC	6 cut(s)	121, 159, 771, 1014, 1047, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 1079
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	537
BstV1I	GCAGC	4 cut(s)	36, 39, 424, 1021
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	760
BsuRI	GGCC	1 cut(s)	765
BtgI	CCRYGG	2 cut(s)	322, 603
BtsCI	GGATG	2 cut(s)	268, 823
BtsIMutI	CAGTG	1 cut(s)	1017
BveI	ACCTGC	1 cut(s)	1039
Cac8I	GCNNGC	2 cut(s)	32, 178
CaiI	CAGNNNCTG	1 cut(s)	30
CciI	TCATGA	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	998
CseI	GACGC	2 cut(s)	404, 884
Csp6I	GTAC	1 cut(s)	1055
CviAII	CATG	6 cut(s)	323, 427, 496, 604, 629, 711
CviQI	GTAC	1 cut(s)	1055
DdeI	CTNAG	3 cut(s)	717, 760, 937
DpnI	GATC	6 cut(s)	123, 161, 773, 1016, 1049, 1116
DpnII	GATC	6 cut(s)	121, 159, 771, 1014, 1047, 1114
Eam1104I	CTCTTC	3 cut(s)	12, 340, 456
EarI	CTCTTC	3 cut(s)	12, 340, 456
Ecl136II	GAGCTC	2 cut(s)	333, 544
Eco130I	CCWWGG	4 cut(s)	322, 567, 582, 603
Eco147I	AGGCCT	1 cut(s)	765
Eco24I	GRGCYC	2 cut(s)	335, 546
Eco31I	GGTCTC	2 cut(s)	138, 806
Eco47I	GGWCC	1 cut(s)	998
Eco53kI	GAGCTC	2 cut(s)	333, 544
Eco57I	CTGAAG	2 cut(s)	480, 870
Eco81I	CCTNAGG	1 cut(s)	760
Eco88I	CYCGRG	2 cut(s)	141, 976
EcoICRI	GAGCTC	2 cut(s)	333, 544
EcoT14I	CCWWGG	4 cut(s)	322, 567, 582, 603
EcoT38I	GRGCYC	2 cut(s)	335, 546
ErhI	CCWWGG	4 cut(s)	322, 567, 582, 603
Esp3I	CGTCTC	1 cut(s)	867
FaeI	CATG	6 cut(s)	326, 430, 499, 607, 632, 714
FaqI	GGGAC	1 cut(s)	913
FatI	CATG	6 cut(s)	322, 426, 495, 603, 628, 710
FbaI	TGATCA	1 cut(s)	1014
Fnu4HI	GCNGC	4 cut(s)	25, 28, 413, 1035
FokI	GGATG	2 cut(s)	275, 830
FriOI	GRGCYC	2 cut(s)	335, 546
Fsp4HI	GCNGC	4 cut(s)	25, 28, 413, 1035
FspBI	CTAG	4 cut(s)	105, 273, 549, 1008
GluI	GCNGC	4 cut(s)	25, 28, 413, 1035
GsuI	CTGGAG	1 cut(s)	902
HaeIII	GGCC	1 cut(s)	765
HapII	CCGG	2 cut(s)	539, 722
HgaI	GACGC	2 cut(s)	404, 884
Hin1II	CATG	6 cut(s)	326, 430, 499, 607, 632, 714
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HinfI	GANTC	4 cut(s)	239, 257, 951, 1090
HpaII	CCGG	2 cut(s)	539, 722
HphI	GGTGA	3 cut(s)	146, 521, 1001
Hpy166II	GTNNAC	4 cut(s)	154, 319, 865, 934
Hpy188I	TCNGA	7 cut(s)	234, 262, 460, 737, 754, 940, 1052
Hpy8I	GTNNAC	4 cut(s)	154, 319, 865, 934
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	69, 107, 791, 808
HpyCH4III	ACNGT	3 cut(s)	134, 248, 405
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	4 cut(s)	682, 781, 972, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 1079
HpyF3I	CTNAG	3 cut(s)	717, 760, 937
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	6 cut(s)	326, 430, 499, 607, 632, 714
Ksp22I	TGATCA	1 cut(s)	1014
Kzo9I	GATC	6 cut(s)	121, 159, 771, 1014, 1047, 1114
LguI	GCTCTTC	2 cut(s)	340, 456
LmnI	GCTCC	3 cut(s)	282, 541, 549
Lsp1109I	GCAGC	4 cut(s)	36, 39, 424, 1021
LweI	GCATC	4 cut(s)	127, 634, 745, 928
MaeI	CTAG	4 cut(s)	105, 273, 549, 1008
MaeII	ACGT	1 cut(s)	486
MalI	GATC	6 cut(s)	123, 161, 773, 1016, 1049, 1116
MboI	GATC	6 cut(s)	121, 159, 771, 1014, 1047, 1114
MfeI	CAATTG	1 cut(s)	927
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	335, 546
MluCI	AATT	8 cut(s)	71, 266, 363, 653, 791, 823, 927, 993
MlyI	GAGTC	1 cut(s)	945
MmeI	TCCRAC	1 cut(s)	324
MseI	TTAA	5 cut(s)	354, 837, 888, 1119, 1126
MslI	CAYNNNNRTG	2 cut(s)	132, 753
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	2 cut(s)	539, 722
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	927
Mva1269I	GAATGC	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	36, 1079
NciI	CCSGG	1 cut(s)	539
NcoI	CCATGG	2 cut(s)	322, 603
NdeII	GATC	6 cut(s)	121, 159, 771, 1014, 1047, 1114
NlaIII	CATG	6 cut(s)	326, 430, 499, 607, 632, 714
NlaIV	GGNNCC	2 cut(s)	166, 278
NspI	RCATGY	1 cut(s)	632
OliI	CACNNNNGTG	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	141
PagI	TCATGA	1 cut(s)	495
PaqCI	CACCTGC	1 cut(s)	1039
PceI	AGGCCT	1 cut(s)	765
PciSI	GCTCTTC	2 cut(s)	340, 456
PctI	GAATGC	1 cut(s)	684
PfeI	GAWTC	3 cut(s)	239, 257, 1090
PfoI	TCCNGGA	1 cut(s)	537
PkrI	GCNGC	4 cut(s)	26, 29, 414, 1036
PleI	GAGTC	1 cut(s)	945
PpsI	GAGTC	1 cut(s)	945
Psp124BI	GAGCTC	2 cut(s)	335, 546
PspN4I	GGNNCC	2 cut(s)	166, 278
PspPI	GGNCC	1 cut(s)	998
PstNI	CAGNNNCTG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	1056
RsaNI	GTAC	1 cut(s)	1055
RseI	CAYNNNNRTG	2 cut(s)	132, 753
SacI	GAGCTC	2 cut(s)	335, 546
SapI	GCTCTTC	2 cut(s)	340, 456
SaqAI	TTAA	5 cut(s)	354, 837, 888, 1119, 1126
SatI	GCNGC	4 cut(s)	25, 28, 413, 1035
Sau3AI	GATC	6 cut(s)	121, 159, 771, 1014, 1047, 1114
Sau96I	GGNCC	1 cut(s)	998
SchI	GAGTC	1 cut(s)	945
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	335, 546
SfaNI	GCATC	4 cut(s)	127, 634, 745, 928
Sfr274I	CTCGAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	998
SlaI	CTCGAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	2 cut(s)	132, 753
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	8 cut(s)	71, 266, 363, 653, 791, 823, 927, 993
SseBI	AGGCCT	1 cut(s)	765
SspMI	CTAG	4 cut(s)	105, 273, 549, 1008
SstI	GAGCTC	2 cut(s)	335, 546
StuI	AGGCCT	1 cut(s)	765
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	4 cut(s)	322, 567, 582, 603
TaaI	ACNGT	3 cut(s)	134, 248, 405
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	4 cut(s)	142, 242, 386, 922
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	8 cut(s)	71, 266, 363, 653, 791, 823, 927, 993
TatI	WGTACW	1 cut(s)	1054
TfiI	GAWTC	3 cut(s)	239, 257, 1090
Tru1I	TTAA	5 cut(s)	354, 837, 888, 1119, 1126
Tru9I	TTAA	5 cut(s)	354, 837, 888, 1119, 1126
TscAI	CASTG	1 cut(s)	1024
TseI	GCWGC	4 cut(s)	24, 27, 412, 1034
TspDTI	ATGAA	6 cut(s)	186, 279, 484, 666, 710, 804
TspRI	CASTG	1 cut(s)	1024
VpaK11BI	GGWCC	1 cut(s)	998
XapI	RAATTY	1 cut(s)	363
XceI	RCATGY	1 cut(s)	632
XhoI	CTCGAG	1 cut(s)	141
XspI	CTAG	4 cut(s)	105, 273, 549, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.