Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

8864791 .. 8867489

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G154800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAAGAAAAGGCATCGAGGAGCTTCTACGGTGGCTCTCTTATTGTGCCTAGTGTTCAAGAATTGGCCAAGAAGCCTGTAATCACCATCCCACCCAGATACATACAGCCTCATCATCACCATCACCAACAAGATCAAGTGATATTCAACTCTGATGCAGAAATACCATTCATTGACATGCACAAGTTGCTTTCTCAAGACTCAATTGATTCTGAATCTGAGTTAGCTAAGCTCCATTTTGCTTGCAAAGAGTGGGGTTTCTTTCAGTTGGTAAACCATGGAGTGAGCTCTTCCTTGATGGAGAAAATAAAGACAGAAGTTCAAGACTTCTTCAACCTTCCCATGGAAGTGAAGAAAAAGTTTTGGCAATCCCCAGGAGACGTGGAAGGTTTTGGACAAGCCTTTGTAGTTTCAGAAGACCAAAAGCTCGATTGGGCTGACCTTTTCTTCATGACCACCCTTCCAGTTCAAATAAGGAGGCCTCGTCTGTTCCCAAACCTCCCTTCTCCTTTCAGAGAGACCTTAGATGATTACTCATTGGAGCTGAGGAACCTATCCATGACTATCCTATCCCAAATGGAAACTGCTTTACAAATGGAAGACAAGGAAGTGACCAAGTTGTATGAAGATGGAATGCAACAAATGAGGATGAACTATTACCCTCCATGTCCTCATCCAGGGGAAGTCATCGGTCTTACACCTCATTCTGATAGTGTAGGTCTCACCATCCTCCTACAAGTCAATGAAATGGATGGTCTCCAAGTGAAGAAAGATGGGATTTGGGTTCCTGTTAAACCACTACCAGATGCCTTTATTGTCAACGTTGGAGACATTTTAGAGATTCAAACAAATGGTGTTTATCGCAGCATTGAGCATCGGGCAACAGTTAACTCTGTGAAAGAAAGGCTCTCGATCGCTACATTTTACAACCCGGGATTTGGTGGTGAAATTGGTCCAGTTCCTAGCTTGGTCACTGAGCAAACACCTGCAGCATATACAAGGATACGAGTTGAAGATTATTTCAAAGCCTATTTACAACGTAAGCTTCAAGGAAAGTCTTTTCTTGATGAGCTGAGGATAAAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

363

Amino Acids

41.46

Weight (kDa)

5.52

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	994
Acc36I	ACCTGC	1 cut(s)	994
AclI	AACGTT	1 cut(s)	822
AcoI	YGGCCR	1 cut(s)	66
AfiI	CCNNNNNNNGG	3 cut(s)	343, 677, 938
AgsI	TTSAA	9 cut(s)	59, 148, 323, 334, 470, 845, 1013, 1024, 1049
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	373, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AluBI	AGCT	9 cut(s)	24, 227, 232, 288, 427, 544, 966, 1045, 1072
AluI	AGCT	9 cut(s)	24, 227, 232, 288, 427, 544, 966, 1045, 1072
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	5 cut(s)	372, 512, 725, 761, 822
Ama87I	CYCGRG	1 cut(s)	931
AoxI	GGCC	2 cut(s)	66, 479
ApeKI	GCWGC	2 cut(s)	864, 989
AspS9I	GGNCC	1 cut(s)	953
AsuC2I	CCSGG	2 cut(s)	932, 933
AsuHPI	GGTGA	5 cut(s)	76, 110, 116, 715, 956
AvaI	CYCGRG	1 cut(s)	931
AvaII	GGWCC	1 cut(s)	953
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	290
BbsI	GAAGAC	2 cut(s)	423, 606
Bbv12I	GWGCWC	1 cut(s)	290
BbvCI	CCTCAGC	2 cut(s)	545, 1073
BbvI	GCAGC	2 cut(s)	876, 1001
BccI	CCATC	7 cut(s)	95, 129, 292, 623, 734, 746, 767
BciT130I	CCWGG	2 cut(s)	375, 678
BciVI	GTATCC	1 cut(s)	996
BcnI	CCSGG	2 cut(s)	932, 933
BcoDI	GTCTC	5 cut(s)	372, 512, 725, 761, 822
BfaI	CTAG	2 cut(s)	51, 963
BfmI	CTRYAG	1 cut(s)	987
BfuAI	ACCTGC	1 cut(s)	994
BfuI	GTATCC	1 cut(s)	996
BisI	GCNGC	2 cut(s)	865, 990
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	2 cut(s)	866, 991
Bme1390I	CCNGG	4 cut(s)	375, 678, 932, 933
Bme18I	GGWCC	1 cut(s)	953
BmeT110I	CYCGRG	1 cut(s)	931
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	953
BmiI	GGNNCC	2 cut(s)	551, 786
BmrFI	CCNGG	4 cut(s)	375, 678, 932, 933
BmsI	GCATC	4 cut(s)	23, 145, 796, 883
BpiI	GAAGAC	2 cut(s)	423, 606
Bpu10I	CCTNAGC	2 cut(s)	545, 1073
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	932, 933
BsaI	GGTCTC	3 cut(s)	512, 725, 761
BsaJI	CCNNGG	5 cut(s)	277, 342, 373, 677, 931
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 677, 938
Bse1I	ACTGG	2 cut(s)	464, 956
BseBI	CCWGG	2 cut(s)	375, 678
BseDI	CCNNGG	5 cut(s)	277, 342, 373, 677, 931
BseGI	GGATG	5 cut(s)	87, 654, 673, 726, 757
BseLI	CCNNNNNNNGG	3 cut(s)	343, 677, 938
BseMII	CTCAG	4 cut(s)	210, 536, 966, 1064
BseNI	ACTGG	2 cut(s)	464, 956
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	876, 1001
Bsh1285I	CGRYCG	1 cut(s)	915
BshFI	GGCC	2 cut(s)	68, 481
BsiEI	CGRYCG	1 cut(s)	915
BsiHKAI	GWGCWC	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	931
BsiSI	CCGG	1 cut(s)	932
BslI	CCNNNNNNNGG	3 cut(s)	343, 677, 938
BsmAI	GTCTC	5 cut(s)	372, 512, 725, 761, 822
BsmBI	CGTCTC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	2 cut(s)	68, 481
Bso31I	GGTCTC	3 cut(s)	512, 725, 761
BsoBI	CYCGRG	1 cut(s)	931
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	133, 912
Bsp1720I	GCTNAGC	1 cut(s)	228
Bsp19I	CCATGG	2 cut(s)	277, 342
BspANI	GGCC	2 cut(s)	68, 481
BspCNI	CTCAG	4 cut(s)	211, 537, 967, 1065
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	551, 786
BspMAI	CTGCAG	1 cut(s)	991
BspMI	ACCTGC	1 cut(s)	994
BspQI	GCTCTTC	1 cut(s)	295
BspTNI	GGTCTC	3 cut(s)	512, 725, 761
BsrI	ACTGG	2 cut(s)	464, 956
BssECI	CCNNGG	5 cut(s)	277, 342, 373, 677, 931
BssMI	GATC	2 cut(s)	133, 912
BssT1I	CCWWGG	2 cut(s)	277, 342
Bst2UI	CCWGG	2 cut(s)	375, 678
Bst4CI	ACNGT	2 cut(s)	32, 886
Bst6I	CTCTTC	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	6 cut(s)	219, 228, 523, 545, 975, 1073
BstDSI	CCRYGG	2 cut(s)	277, 342
BstENI	CCTNNNNNAGG	1 cut(s)	675
BstF5I	GGATG	5 cut(s)	87, 654, 673, 726, 757
BstKTI	GATC	2 cut(s)	136, 915
BstMAI	GTCTC	5 cut(s)	372, 512, 725, 761, 822
BstMBI	GATC	2 cut(s)	133, 912
BstMCI	CGRYCG	1 cut(s)	915
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	2 cut(s)	375, 678
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	4 cut(s)	373, 676, 930, 931
BstSFI	CTRYAG	1 cut(s)	987
BstV1I	GCAGC	2 cut(s)	876, 1001
BstV2I	GAAGAC	2 cut(s)	423, 606
BsuI	GTATCC	1 cut(s)	996
BsuRI	GGCC	2 cut(s)	68, 481
BtgI	CCRYGG	2 cut(s)	277, 342
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	5 cut(s)	87, 654, 673, 726, 757
BtsIMutI	CAGTG	1 cut(s)	972
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	1 cut(s)	244
CciI	TCATGA	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	953
Cfr9I	CCCGGG	1 cut(s)	931
CviAII	CATG	6 cut(s)	178, 278, 343, 451, 559, 666
DdeI	CTNAG	6 cut(s)	219, 228, 523, 545, 975, 1073
DpnI	GATC	2 cut(s)	135, 914
DpnII	GATC	2 cut(s)	133, 912
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	2 cut(s)	277, 342
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	3 cut(s)	512, 725, 761
Eco47I	GGWCC	1 cut(s)	953
Eco53kI	GAGCTC	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	931
EcoICRI	GAGCTC	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	675
EcoRII	CCWGG	2 cut(s)	373, 676
EcoT14I	CCWWGG	2 cut(s)	277, 342
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	2 cut(s)	277, 342
Esp3I	CGTCTC	1 cut(s)	372
FaeI	CATG	6 cut(s)	181, 281, 346, 454, 562, 669
FatI	CATG	6 cut(s)	177, 277, 342, 450, 558, 665
Fnu4HI	GCNGC	2 cut(s)	865, 990
FokI	GGATG	5 cut(s)	74, 660, 661, 713, 764
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	865, 990
FspBI	CTAG	2 cut(s)	51, 963
GluI	GCNGC	2 cut(s)	865, 990
HaeIII	GGCC	2 cut(s)	68, 481
HapII	CCGG	1 cut(s)	932
Hin1II	CATG	6 cut(s)	181, 281, 346, 454, 562, 669
HincII	GTYRAC	2 cut(s)	820, 889
HindII	GTYRAC	2 cut(s)	820, 889
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	4 cut(s)	200, 209, 215, 841
HpaI	GTTAAC	1 cut(s)	889
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	5 cut(s)	76, 110, 116, 715, 956
Hpy166II	GTNNAC	3 cut(s)	274, 820, 889
Hpy188I	TCNGA	6 cut(s)	154, 214, 220, 415, 515, 709
Hpy188III	TCNNGA	6 cut(s)	59, 197, 323, 451, 910, 1064
Hpy8I	GTNNAC	3 cut(s)	274, 820, 889
HpyAV	CCTTC	4 cut(s)	347, 380, 470, 513
HpyCH4III	ACNGT	2 cut(s)	32, 886
HpyCH4IV	ACGT	3 cut(s)	381, 822, 1039
HpyCH4V	TGCA	5 cut(s)	158, 181, 246, 637, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	6 cut(s)	219, 228, 523, 545, 975, 1073
HpySE526I	ACGT	3 cut(s)	381, 822, 1039
Hsp92II	CATG	6 cut(s)	181, 281, 346, 454, 562, 669
KspAI	GTTAAC	1 cut(s)	889
Kzo9I	GATC	2 cut(s)	133, 912
LguI	GCTCTTC	1 cut(s)	295
LmnI	GCTCC	3 cut(s)	21, 237, 541
Lsp1109I	GCAGC	2 cut(s)	876, 1001
LweI	GCATC	4 cut(s)	23, 145, 796, 883
MaeI	CTAG	2 cut(s)	51, 963
MaeII	ACGT	3 cut(s)	381, 822, 1039
MaeIII	GTNAC	2 cut(s)	610, 970
MalI	GATC	2 cut(s)	135, 914
MboI	GATC	2 cut(s)	133, 912
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	3 cut(s)	62, 204, 948
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	805
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	2 cut(s)	792, 888
MslI	CAYNNNNRTG	2 cut(s)	176, 347
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	1 cut(s)	932
MspR9I	CCNGG	4 cut(s)	375, 678, 932, 933
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	2 cut(s)	375, 678
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	2 cut(s)	932, 933
NcoI	CCATGG	2 cut(s)	277, 342
NdeII	GATC	2 cut(s)	133, 912
NlaIII	CATG	6 cut(s)	181, 281, 346, 454, 562, 669
NlaIV	GGNNCC	2 cut(s)	551, 786
NmuCI	GTSAC	2 cut(s)	610, 970
NspI	RCATGY	1 cut(s)	181
PagI	TCATGA	1 cut(s)	450
PaqCI	CACCTGC	1 cut(s)	994
PceI	AGGCCT	1 cut(s)	481
PciSI	GCTCTTC	1 cut(s)	295
PctI	GAATGC	1 cut(s)	639
PfeI	GAWTC	3 cut(s)	209, 215, 841
PkrI	GCNGC	2 cut(s)	866, 991
Ple19I	CGATCG	1 cut(s)	915
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	290
Psp1406I	AACGTT	1 cut(s)	822
Psp6I	CCWGG	2 cut(s)	373, 676
PspGI	CCWGG	2 cut(s)	373, 676
PspN4I	GGNNCC	2 cut(s)	551, 786
PspPI	GGNCC	1 cut(s)	953
PstI	CTGCAG	1 cut(s)	991
PvuI	CGATCG	1 cut(s)	915
RseI	CAYNNNNRTG	2 cut(s)	176, 347
SacI	GAGCTC	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	295
SaqAI	TTAA	2 cut(s)	792, 888
SatI	GCNGC	2 cut(s)	865, 990
Sau3AI	GATC	2 cut(s)	133, 912
Sau96I	GGNCC	1 cut(s)	953
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	4 cut(s)	375, 678, 932, 933
SduI	GDGCHC	1 cut(s)	290
SfaNI	GCATC	4 cut(s)	23, 145, 796, 883
SfcI	CTRYAG	1 cut(s)	987
SinI	GGWCC	1 cut(s)	953
SmaI	CCCGGG	1 cut(s)	933
SmiMI	CAYNNNNRTG	2 cut(s)	176, 347
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	3 cut(s)	62, 204, 948
SseBI	AGGCCT	1 cut(s)	481
SspMI	CTAG	2 cut(s)	51, 963
SstI	GAGCTC	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	4 cut(s)	373, 676, 930, 931
StyI	CCWWGG	2 cut(s)	277, 342
TaaI	ACNGT	2 cut(s)	32, 886
TaiI	ACGT	3 cut(s)	384, 825, 1042
TaqI	TCGA	3 cut(s)	17, 429, 911
TaqII	GACCGA	1 cut(s)	680
TasI	AATT	3 cut(s)	62, 204, 948
TfiI	GAWTC	3 cut(s)	209, 215, 841
Tru1I	TTAA	2 cut(s)	792, 888
Tru9I	TTAA	2 cut(s)	792, 888
TscAI	CASTG	1 cut(s)	979
TseFI	GTSAC	2 cut(s)	610, 970
TseI	GCWGC	2 cut(s)	864, 989
Tsp45I	GTSAC	2 cut(s)	610, 970
TspDTI	ATGAA	5 cut(s)	160, 439, 639, 665, 759
TspMI	CCCGGG	1 cut(s)	931
TspRI	CASTG	1 cut(s)	979
VpaK11BI	GGWCC	1 cut(s)	953
XagI	CCTNNNNNAGG	1 cut(s)	675
XceI	RCATGY	1 cut(s)	181
XmaI	CCCGGG	1 cut(s)	931
XspI	CTAG	2 cut(s)	51, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.