Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

27068061 .. 27069246

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTATCCTATCACAAATGGAAAAAGCTTTGCAGATGGAAGCCAAGGAAGTGACCAACATATTCGAAGGTGGATTGCAAGCGGTGAGGGTGAACTATTACCCTCCGTGTCCTCAGCCGGGGAAAGTCCTCGGTCTGACCCCTCACTCTGATGGTGGAGCTCTCACCATCCTCCTTCAAGTCAATGAAATGGATGGCCTCCAAGTGAAGAAGGATGGGATTTGGGTTCCTGTGAAGCCACTACCGGATGCCTTTATTGTGAATATTGGAGACGTTCTAGAGATTATAACAAATGGGACGTATCGTAGCATTGAACATCGTGCAACTGTGAACTCTGAAAAAGAAAGGCTCTCAATCGCCACATTTTACAACCCCAGAGTTGATGGTAAAATCGGCCCGGCCTCTAGCTTGATTACTGAGCAAACCCCAGCAACATTTAAAAGGCTGGGAGTTGAGGACTATTTCAAAATATTTTTTGAACGTAAGCTTCATGGGAAGTCTTGTCTTGACGAATTGAGGATTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

176

Amino Acids

19.49

Weight (kDa)

6.84

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	27 - 125	2e-35	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AciI	CCGC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	179, 314, 466, 479
AluBI	AGCT	4 cut(s)	29, 161, 408, 487
AluI	AGCT	4 cut(s)	29, 161, 408, 487
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	264
AoxI	GGCC	3 cut(s)	196, 394, 399
AspS9I	GGNCC	1 cut(s)	395
AsuC2I	CCSGG	2 cut(s)	120, 398
AsuHPI	GGTGA	3 cut(s)	97, 103, 157
AsuII	TTCGAA	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	114
BccI	CCATC	6 cut(s)	31, 146, 176, 188, 209, 377
BcnI	CCSGG	2 cut(s)	120, 398
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	2 cut(s)	278, 405
Bme1390I	CCNGG	2 cut(s)	120, 398
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	120, 398
BmsI	GCATC	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	120, 398
BsaJI	CCNNGG	3 cut(s)	45, 119, 130
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	45, 119, 130
BseGI	GGATG	4 cut(s)	168, 199, 220, 253
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	2 cut(s)	128, 408
BseYI	CCCAGC	2 cut(s)	427, 445
BshFI	GGCC	3 cut(s)	198, 396, 401
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	119, 245, 398
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	264
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	198, 396, 401
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	3 cut(s)	198, 396, 401
BspCNI	CTCAG	2 cut(s)	127, 409
BspLI	GGNNCC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	45, 119, 130
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	328
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	114, 417
BstF5I	GGATG	4 cut(s)	168, 199, 220, 253
BstMAI	GTCTC	1 cut(s)	264
BstSCI	CCNGG	2 cut(s)	118, 396
BsuRI	GGCC	3 cut(s)	198, 396, 401
BtsCI	GGATG	4 cut(s)	168, 199, 220, 253
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	395
CviAII	CATG	1 cut(s)	491
DdeI	CTNAG	2 cut(s)	114, 417
DraI	TTTAAA	1 cut(s)	439
Ecl136II	GAGCTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	1 cut(s)	494
FaiI	YATR	3 cut(s)	62, 287, 492
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	1 cut(s)	490
FokI	GGATG	4 cut(s)	155, 206, 227, 260
FriOI	GRGCYC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	278, 405
GsaI	CCCAGC	2 cut(s)	431, 449
HaeIII	GGCC	3 cut(s)	198, 396, 401
HapII	CCGG	3 cut(s)	119, 245, 398
Hin1II	CATG	1 cut(s)	494
HindIII	AAGCTT	2 cut(s)	27, 485
HpaII	CCGG	3 cut(s)	119, 245, 398
HphI	GGTGA	3 cut(s)	97, 103, 157
Hpy166II	GTNNAC	2 cut(s)	94, 331
Hpy188I	TCNGA	3 cut(s)	138, 151, 337
Hpy188III	TCNNGA	2 cut(s)	278, 506
Hpy8I	GTNNAC	2 cut(s)	94, 331
HpyAV	CCTTC	3 cut(s)	62, 185, 205
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	3 cut(s)	273, 299, 481
HpyCH4V	TGCA	3 cut(s)	34, 79, 323
HpyF3I	CTNAG	2 cut(s)	114, 417
HpySE526I	ACGT	3 cut(s)	273, 299, 481
Hsp92II	CATG	1 cut(s)	494
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	7 cut(s)	132, 243, 258, 388, 411, 431, 441
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	278, 405
MaeII	ACGT	3 cut(s)	273, 299, 481
MaeIII	GTNAC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	512
MseI	TTAA	2 cut(s)	438, 522
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	3 cut(s)	119, 245, 398
MspR9I	CCNGG	2 cut(s)	120, 398
NciI	CCSGG	2 cut(s)	120, 398
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	52
NspV	TTCGAA	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	163
PspFI	CCCAGC	2 cut(s)	427, 445
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	150
SacI	GAGCTC	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	438, 522
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	120, 398
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	8 cut(s)	31, 73, 163, 276, 302, 410, 484, 489
SfaNI	GCATC	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	512
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	2 cut(s)	265, 471
SspMI	CTAG	2 cut(s)	278, 405
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	2 cut(s)	118, 396
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	3 cut(s)	276, 302, 484
TaqI	TCGA	1 cut(s)	66
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	512
Tru1I	TTAA	2 cut(s)	438, 522
Tru9I	TTAA	2 cut(s)	438, 522
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	201, 479
TspGWI	ACGGA	1 cut(s)	96
XbaI	TCTAGA	1 cut(s)	277
XspI	CTAG	2 cut(s)	278, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.