Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

22765868 .. 22775959

Gene Structure 10092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG223600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGGAAGCCTCACTTATTCCCGGAGCTCCCTACTCCTTTCAAAGACACCTTGGAGATTTACTCAATGGAATTGGAAAACCTAGCCATGGCTATCCTAACCCAAATGGAAAATGCTTTAAAAATTGAAGCCAAGGAATTGACCAAGTCATTTGTAGGTGGAATGCAATCCATGAGGATGAACTATTATCCTCCATGTCCACAGCCGGAGAAAGTCATCGGCCTTACTCCTCATTCGGACGCCGTAGGTCTAACCATCCTCCTGCAAGTCAATGAAATATTGGAAGGTCTCCAAGTCAAGAAGGATGGGATTTGGTTTCCTGTTAAGCCACTTCCAGATGACTTCATTGTCAACGTTGGAGACATTTTAGAGATTCAAACAAATGGAACTTATCGTAGCATCGAGCATCGAGCAATTGTCAATTCTAAAAAAGAAAGACTGTCAATCGCGACATTTTACAGCCCGAGACTTGATGGCGAAATTTGTCCGGCACCTAGCTTGATCACTGAAGAAACACATGCTGCATATACAAGCATCGGAGTGCAAGATTTCTTCACAGCCTTATTTGCACGTAAGCTTCAAGGAAAATCCTTTCTTGATGATCTTAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

204

Amino Acids

23.01

Weight (kDa)

5.43

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	56 - 155	5.6e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	613
AasI	GACNNNNNNGTC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	1 cut(s)	449
AclI	AACGTT	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	528
AcyI	GRCGYC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	4 cut(s)	43, 128, 377, 581
AluBI	AGCT	3 cut(s)	28, 498, 577
AluI	AGCT	3 cut(s)	28, 498, 577
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	3 cut(s)	293, 354, 460
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	1 cut(s)	480
AsuC2I	CCSGG	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	3 cut(s)	263, 299, 467
BceAI	ACGGC	1 cut(s)	227
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	3 cut(s)	293, 354, 460
BfaI	CTAG	2 cut(s)	83, 495
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	408, 415, 543
BplI	GAGNNNNNCTC	3 cut(s)	27, 47, 79
BpuMI	CCSGG	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	572
BsaHI	GRCGYC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	51, 87, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseDI	CCNNGG	3 cut(s)	51, 87, 132
BseGI	GGATG	3 cut(s)	183, 255, 310
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	3 cut(s)	23, 206, 488
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	3 cut(s)	293, 354, 460
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	501, 601
Bsp19I	CCATGG	1 cut(s)	87
Bsp68I	TCGCGA	1 cut(s)	449
BspANI	GGCC	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	293
BssECI	CCNNGG	3 cut(s)	51, 87, 132
BssMI	GATC	2 cut(s)	501, 601
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	3 cut(s)	51, 87, 132
Bst4CI	ACNGT	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	572
BstDEI	CTNAG	1 cut(s)	605
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	183, 255, 310
BstFNI	CGCG	1 cut(s)	449
BstKTI	GATC	2 cut(s)	504, 604
BstMAI	GTCTC	3 cut(s)	293, 354, 460
BstMBI	GATC	2 cut(s)	501, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	21
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	183, 255, 310
BtsIMutI	CAGTG	1 cut(s)	504
BtuMI	TCGCGA	1 cut(s)	449
CseI	GACGC	1 cut(s)	248
CviAII	CATG	4 cut(s)	88, 172, 195, 518
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	2 cut(s)	503, 603
DpnII	GATC	2 cut(s)	501, 601
DraI	TTTAAA	1 cut(s)	120
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	3 cut(s)	51, 87, 132
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	28
EcoT14I	CCWWGG	3 cut(s)	51, 87, 132
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	3 cut(s)	51, 87, 132
FaeI	CATG	4 cut(s)	91, 175, 198, 521
FaiI	YATR	7 cut(s)	89, 173, 196, 519, 526, 528, 613
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	4 cut(s)	87, 171, 194, 517
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	3 cut(s)	190, 242, 317
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	2 cut(s)	83, 495
GluI	GCNGC	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	3 cut(s)	23, 206, 488
HgaI	GACGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	91, 175, 198, 521
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	3 cut(s)	23, 206, 488
Hpy166II	GTNNAC	2 cut(s)	200, 352
Hpy188I	TCNGA	2 cut(s)	238, 539
Hpy188III	TCNNGA	4 cut(s)	298, 335, 448, 596
Hpy8I	GTNNAC	2 cut(s)	200, 352
HpyAV	CCTTC	2 cut(s)	278, 295
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4IV	ACGT	2 cut(s)	354, 571
HpyCH4V	TGCA	5 cut(s)	166, 265, 524, 544, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	2 cut(s)	354, 571
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	91, 175, 198, 521
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	2 cut(s)	501, 601
LmnI	GCTCC	2 cut(s)	25, 33
LpnPI	CCDG	6 cut(s)	36, 219, 275, 333, 348, 501
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	3 cut(s)	408, 415, 543
MaeI	CTAG	2 cut(s)	83, 495
MaeII	ACGT	2 cut(s)	354, 571
MalI	GATC	2 cut(s)	503, 603
MboI	GATC	2 cut(s)	501, 601
MboII	GAAGA	2 cut(s)	521, 544
MfeI	CAATTG	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	6 cut(s)	71, 123, 137, 414, 421, 480
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	5 cut(s)	21, 168, 201, 240, 269
MseI	TTAA	2 cut(s)	119, 324
MslI	CAYNNNNRTG	2 cut(s)	176, 539
MspI	CCGG	3 cut(s)	23, 206, 488
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	168
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	566
NciI	CCSGG	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	501, 601
NlaIII	CATG	4 cut(s)	91, 175, 198, 521
NlaIV	GGNNCC	1 cut(s)	492
NruI	TCGCGA	1 cut(s)	449
NspI	RCATGY	1 cut(s)	521
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	373
PflFI	GACNNNGTC	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	572
PsiI	TTATAA	1 cut(s)	613
Psp124BI	GAGCTC	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	492
PsyI	GACNNNGTC	1 cut(s)	145
RruI	TCGCGA	1 cut(s)	449
RseI	CAYNNNNRTG	2 cut(s)	176, 539
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	119, 324
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	2 cut(s)	501, 601
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	3 cut(s)	408, 415, 543
SmiMI	CAYNNNNRTG	2 cut(s)	176, 539
Sse9I	AATT	6 cut(s)	71, 123, 137, 414, 421, 480
SspI	AATATT	1 cut(s)	279
SspMI	CTAG	2 cut(s)	83, 495
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	3 cut(s)	51, 87, 132
TaaI	ACNGT	1 cut(s)	441
TaiI	ACGT	2 cut(s)	357, 574
TaqI	TCGA	2 cut(s)	402, 409
TasI	AATT	6 cut(s)	71, 123, 137, 414, 421, 480
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	119, 324
Tru9I	TTAA	2 cut(s)	119, 324
TscAI	CASTG	1 cut(s)	511
TseI	GCWGC	1 cut(s)	521
TspDTI	ATGAA	3 cut(s)	194, 288, 334
TspRI	CASTG	1 cut(s)	511
Tth111I	GACNNNGTC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	1 cut(s)	521
XspI	CTAG	2 cut(s)	83, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.