Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

8533609 .. 8550540

Gene Structure 16932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29322

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAACAAGTTACTTTCGGAAGAAACCATGCCAGCAGAGTTGCAGGAGTTCCACCTTGCTTGCAAAGAATGGGGTTTCTTCCAGCTGATAAATCATGGAGTTGGTGAAACTTTGTTGGAGAGTGTGAAGTCAGGGATTCAAGAATTCTTCAGTCTCCCAATGGAAAAGAAGAAACAGTTTTGGCAGCAGCCAGAAATTATGGAGGGTTTTGGACAAGCATTTGTTGTGTCTGAGAACCAGAAACTTGATTGGTCAGACATATTCTACTTGATCACACTCCCAAAACATTTGAGGAAGCCACATTTATTCCCCAATATTCCTCAACCACTAAGAGATAACTTAGAAGTGTACTCTGCGGAACTAGAAGATCTTGCCAAGAAGATTCTTGATCTCATGGCAAAAGCACTGGGAGTGGATGCTGACTATATAAAAGAGTTGTTTGACCAAGGGACTCAAATGGTTAGGATGAACTATTATCCACCATGTAAGCAACCAGAGCTTGTCATTGGCCTTAACCCTCACTCAGATCCTGTTGGATTGACAATCCTCCTCCAAGTGAATGAAATGGAAGGCCTTCAGGTTAGAAAAGATGGTATGTGGATTCCGATTAAACCCCTAAACAATGCTTTCGTCGTCAACGTTGGAGATATTTTGGAGATTGTGACGAATGGAATATACCGTAGCATTGAGCATCGGGCAATAGTGAACCAGGAGAAGGAAAGGCTGTCAATAGCCACATTTTACAGTCCAAAATTGGAGGGAGAAATGGGTCCTGCTCCGAGCCTCATTACTCCAGAGAGACCAGCATTGTTCAAGAGAATAGGTGTTGCAGACTACTTCAGGGGAGTTTTTGAACGCAAACTCGATGGGAAATCATACGTAGATGTCATGAGGATTCAACATGGTGAGGATGGCAAAGGCACCCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

310

Amino Acids

35.45

Weight (kDa)

5.32

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	4 - 104	2.1e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	151 - 250	1.3e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	920
AciI	CCGC	1 cut(s)	356
AclI	AACGTT	1 cut(s)	639
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	3 cut(s)	133, 560, 823
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	715
AgsI	TTSAA	4 cut(s)	140, 814, 854, 899
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	2 cut(s)	85, 499
AluI	AGCT	2 cut(s)	85, 499
Alw26I	GTCTC	2 cut(s)	158, 793
AlwI	GGATC	1 cut(s)	521
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	508, 571
ApeKI	GCWGC	2 cut(s)	184, 187
ApoI	RAATTY	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	770
AsuHPI	GGTGA	2 cut(s)	116, 917
AvaII	GGWCC	1 cut(s)	770
BanI	GGYRCC	1 cut(s)	920
BbvI	GCAGC	2 cut(s)	196, 199
BccI	CCATC	3 cut(s)	584, 860, 905
BciT130I	CCWGG	1 cut(s)	710
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	158, 793
BfaI	CTAG	2 cut(s)	362, 931
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	2 cut(s)	185, 188
BlsI	GCNGC	2 cut(s)	186, 189
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	770
BmiI	GGNNCC	2 cut(s)	771, 922
BmrFI	CCNGG	1 cut(s)	710
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	2 cut(s)	406, 700
BmuI	ACTGGG	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	777
BsaAI	YACGTR	1 cut(s)	880
BsaI	GGTCTC	1 cut(s)	793
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse1I	ACTGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	3 cut(s)	421, 471, 916
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMII	CTCAG	2 cut(s)	222, 537
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	196, 199
BshFI	GGCC	2 cut(s)	510, 573
BshNI	GGYRCC	1 cut(s)	920
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmAI	GTCTC	2 cut(s)	158, 793
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	510, 573
Bso31I	GGTCTC	1 cut(s)	793
Bsp143I	GATC	4 cut(s)	270, 367, 388, 526
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	2 cut(s)	510, 573
BspCNI	CTCAG	2 cut(s)	223, 536
BspHI	TCATGA	1 cut(s)	888
BspLI	GGNNCC	2 cut(s)	771, 922
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	920
BspTNI	GGTCTC	1 cut(s)	793
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	4 cut(s)	270, 367, 388, 526
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	3 cut(s)	177, 680, 746
BstBAI	YACGTR	1 cut(s)	880
BstC8I	GCNNGC	2 cut(s)	33, 61
BstDEI	CTNAG	4 cut(s)	231, 329, 340, 523
BstF5I	GGATG	3 cut(s)	421, 471, 916
BstKTI	GATC	4 cut(s)	273, 370, 391, 529
BstMAI	GTCTC	2 cut(s)	158, 793
BstMBI	GATC	4 cut(s)	270, 367, 388, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	708
BstSNI	TACGTA	1 cut(s)	880
BstV1I	GCAGC	2 cut(s)	196, 199
BstX2I	RGATCY	2 cut(s)	367, 526
BstYI	RGATCY	2 cut(s)	367, 526
BsuRI	GGCC	2 cut(s)	510, 573
BtsCI	GGATG	3 cut(s)	421, 471, 916
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	33, 61
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	1 cut(s)	888
Cfr13I	GGNCC	1 cut(s)	770
Csp6I	GTAC	1 cut(s)	349
CspCI	CAANNNNNGTGG	2 cut(s)	41, 76
CviAII	CATG	6 cut(s)	28, 95, 394, 483, 889, 902
CviJI	RGCY	9 cut(s)	85, 190, 298, 499, 510, 573, 724, 734, 783
CviKI_1	RGCY	9 cut(s)	85, 190, 298, 499, 510, 573, 724, 734, 783
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	231, 329, 340, 523
DpnI	GATC	4 cut(s)	272, 369, 390, 528
DpnII	GATC	4 cut(s)	270, 367, 388, 526
Eco105I	TACGTA	1 cut(s)	880
Eco130I	CCWWGG	1 cut(s)	445
Eco147I	AGGCCT	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	793
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	3 cut(s)	133, 560, 823
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	6 cut(s)	31, 98, 397, 486, 892, 905
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	6 cut(s)	27, 94, 393, 482, 888, 901
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	185, 188
FokI	GGATG	3 cut(s)	428, 478, 923
Fsp4HI	GCNGC	2 cut(s)	185, 188
FspBI	CTAG	2 cut(s)	362, 931
GluI	GCNGC	2 cut(s)	185, 188
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	2 cut(s)	510, 573
Hin1II	CATG	6 cut(s)	31, 98, 397, 486, 892, 905
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	5 cut(s)	136, 382, 451, 601, 895
HphI	GGTGA	2 cut(s)	116, 917
Hpy166II	GTNNAC	3 cut(s)	349, 637, 706
Hpy188I	TCNGA	6 cut(s)	19, 232, 256, 526, 606, 780
Hpy188III	TCNNGA	5 cut(s)	140, 386, 794, 814, 889
Hpy8I	GTNNAC	3 cut(s)	349, 637, 706
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	3 cut(s)	563, 584, 709
HpyCH4III	ACNGT	3 cut(s)	177, 680, 746
HpyCH4IV	ACGT	2 cut(s)	639, 879
HpyCH4V	TGCA	3 cut(s)	43, 63, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	4 cut(s)	231, 329, 340, 523
HpySE526I	ACGT	2 cut(s)	639, 879
Hsp92II	CATG	6 cut(s)	31, 98, 397, 486, 892, 905
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	270, 367, 388, 526
LmnI	GCTCC	1 cut(s)	781
Lsp1109I	GCAGC	2 cut(s)	196, 199
LweI	GCATC	2 cut(s)	406, 700
MaeI	CTAG	2 cut(s)	362, 931
MaeII	ACGT	2 cut(s)	639, 879
MaeIII	GTNAC	2 cut(s)	9, 661
MalI	GATC	4 cut(s)	272, 369, 390, 528
MboI	GATC	4 cut(s)	270, 367, 388, 526
MboII	GAAGA	6 cut(s)	32, 70, 139, 181, 377, 391
MflI	RGATCY	2 cut(s)	367, 526
MluCI	AATT	3 cut(s)	143, 195, 752
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	3 cut(s)	96, 514, 622
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	2 cut(s)	513, 609
MspA1I	CMGCKG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	1 cut(s)	496
NdeII	GATC	4 cut(s)	270, 367, 388, 526
NlaIII	CATG	6 cut(s)	31, 98, 397, 486, 892, 905
NlaIV	GGNNCC	2 cut(s)	771, 922
NmuCI	GTSAC	1 cut(s)	661
PagI	TCATGA	1 cut(s)	888
PceI	AGGCCT	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	4 cut(s)	136, 382, 601, 895
PkrI	GCNGC	2 cut(s)	186, 189
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Ppu21I	YACGTR	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	770
Psp1406I	AACGTT	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	771, 922
PspPI	GGNCC	1 cut(s)	770
PspPPI	RGGWCCY	1 cut(s)	770
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	2 cut(s)	367, 526
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	513, 609
SatI	GCNGC	2 cut(s)	185, 188
Sau3AI	GATC	4 cut(s)	270, 367, 388, 526
Sau96I	GGNCC	1 cut(s)	770
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	710
SetI	ASST	7 cut(s)	57, 87, 501, 582, 642, 826, 882
SfaNI	GCATC	2 cut(s)	406, 700
SinI	GGWCC	1 cut(s)	770
SnaBI	TACGTA	1 cut(s)	880
Sse9I	AATT	3 cut(s)	143, 195, 752
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	356
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	2 cut(s)	362, 931
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	3 cut(s)	177, 680, 746
TaiI	ACGT	2 cut(s)	642, 882
TaqI	TCGA	1 cut(s)	864
TasI	AATT	3 cut(s)	143, 195, 752
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	4 cut(s)	136, 382, 601, 895
Tru1I	TTAA	2 cut(s)	513, 609
Tru9I	TTAA	2 cut(s)	513, 609
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	2 cut(s)	184, 187
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	3 cut(s)	17, 482, 576
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	2 cut(s)	362, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.