Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

22765029 .. 22765970

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGAAAATGAAGACAGAAATTCAAGACTTCTTCAACCTCCCGATAGAGGAGAAGAAAAGGTTTTGGCAGCATCCAGGAGACGTGGAGGGTTTTGGACAGGCCTTTGTCGTTTCTGAAGAGCAAAAACTTGATTGGGCTGACATTTTCTTCCTCACCACCCTTCCTGTCCAGATGAGGAAGCCTCACTTATTCCCGGAGCTCCCTACTCCTTTCAAACACCTTGGAGATTTACTCAATGGAATTGGAAAACCTAGCCATGGCTATCCAACCCAAATGGAAAATGCTTTAAAAATTGAAGCCAAGGAATTGACCAAGTCGTTTGTAGGTGGAATGCAATCCATGAGGATGAACTATTATCCTCCATGTCCACAACCGGAGAAAGTCACCGACCTTACTCCTCATTCGGACGCCGTAGGTTTAACCATCCTCCTGCAAGTCAATGAATTATTGGAAGTTCTCCAAGTCAAGAAGGATGGGATTTGGTTTCCTGTTAAGCCACTTCCAGATGCCTTCATTGTCAACGTTGGAGACATTTTAGAGATTCAAACAAATGGAACTTATCGTAGCATTGAGCATCGAGCAATTGTCAACTCTAAAAAAGAAAGACTGTCAATCGCGACATTTTACAGCCCGAGACTTGATGGCGAAATTTGTCCAGCACCTAGCTTGATCACTGAAGAAACACATGCTGCATATACAAGCATCGGAGTGCAAGATTTCTTCACAGCCTTATTTGTACGTAAGCTTCAAGGAAAATCCTTTCTTGATGATCTTAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

261

Amino Acids

29.69

Weight (kDa)

5.69

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	1 - 67	1.1e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	113 - 212	5.1e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	784
AccII	CGCG	1 cut(s)	620
AclI	AACGTT	1 cut(s)	525
AcsI	RAATTY	2 cut(s)	21, 651
AcuI	CTGAAG	2 cut(s)	138, 699
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	2 cut(s)	49, 260
AgsI	TTSAA	6 cut(s)	26, 37, 217, 299, 548, 752
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	202, 669, 748
AluI	AGCT	3 cut(s)	202, 669, 748
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	3 cut(s)	75, 525, 631
Ama87I	CYCGRG	1 cut(s)	634
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	70, 692
ApoI	RAATTY	2 cut(s)	21, 651
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	148, 379
AvaI	CYCGRG	1 cut(s)	634
BanII	GRGCYC	1 cut(s)	204
BarI	GAAGNNNNNNTAC	2 cut(s)	732, 764
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	82, 679
BccI	CCATC	3 cut(s)	434, 470, 638
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	3 cut(s)	75, 525, 631
BfaI	CTAG	2 cut(s)	255, 666
BisI	GCNGC	2 cut(s)	71, 693
BlsI	GCNGC	2 cut(s)	72, 694
Bme1390I	CCNGG	2 cut(s)	78, 197
BmeT110I	CYCGRG	1 cut(s)	634
BmgBI	CACGTC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	78, 197
BmsI	GCATC	4 cut(s)	82, 499, 586, 714
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	4 cut(s)	169, 201, 219, 251
BpuMI	CCSGG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	743
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	223, 259, 303
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 260
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	3 cut(s)	223, 259, 303
BseGI	GGATG	4 cut(s)	73, 354, 426, 481
BseLI	CCNNNNNNNGG	2 cut(s)	49, 260
BseRI	GAGGAG	2 cut(s)	65, 390
BseXI	GCAGC	2 cut(s)	82, 679
Bsh1236I	CGCG	1 cut(s)	620
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	2 cut(s)	197, 377
BslI	CCNNNNNNNGG	2 cut(s)	49, 260
BsmAI	GTCTC	3 cut(s)	75, 525, 631
BsmBI	CGTCTC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	672, 772
Bsp19I	CCATGG	1 cut(s)	259
Bsp68I	TCGCGA	1 cut(s)	620
BspANI	GGCC	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	620
BspQI	GCTCTTC	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	223, 259, 303
BssMI	GATC	2 cut(s)	672, 772
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	3 cut(s)	223, 259, 303
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	743
BstDEI	CTNAG	1 cut(s)	776
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	4 cut(s)	73, 354, 426, 481
BstFNI	CGCG	1 cut(s)	620
BstKTI	GATC	2 cut(s)	675, 775
BstMAI	GTCTC	3 cut(s)	75, 525, 631
BstMBI	GATC	2 cut(s)	672, 772
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	2 cut(s)	76, 195
BstSNI	TACGTA	1 cut(s)	743
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	2 cut(s)	82, 679
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	259
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	4 cut(s)	73, 354, 426, 481
BtsIMutI	CAGTG	1 cut(s)	675
BtuMI	TCGCGA	1 cut(s)	620
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	4 cut(s)	260, 343, 366, 689
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	1 cut(s)	776
DpnI	GATC	2 cut(s)	674, 774
DpnII	GATC	2 cut(s)	672, 772
DraI	TTTAAA	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	202
Eco105I	TACGTA	1 cut(s)	743
Eco130I	CCWWGG	3 cut(s)	223, 259, 303
Eco147I	AGGCCT	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	138, 699
Eco88I	CYCGRG	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	3 cut(s)	223, 259, 303
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	3 cut(s)	223, 259, 303
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	4 cut(s)	263, 346, 369, 692
FaiI	YATR	7 cut(s)	261, 344, 367, 690, 697, 699, 784
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	4 cut(s)	259, 342, 365, 688
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	71, 693
FokI	GGATG	4 cut(s)	60, 361, 413, 488
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	71, 693
FspBI	CTAG	2 cut(s)	255, 666
GluI	GCNGC	2 cut(s)	71, 693
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	2 cut(s)	197, 377
HgaI	GACGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	4 cut(s)	263, 346, 369, 692
HincII	GTYRAC	2 cut(s)	523, 592
HindII	GTYRAC	2 cut(s)	523, 592
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	1 cut(s)	544
HpaII	CCGG	2 cut(s)	197, 377
HphI	GGTGA	2 cut(s)	148, 379
Hpy166II	GTNNAC	3 cut(s)	371, 523, 592
Hpy188I	TCNGA	3 cut(s)	118, 409, 710
Hpy188III	TCNNGA	7 cut(s)	26, 43, 172, 469, 506, 619, 767
Hpy8I	GTNNAC	3 cut(s)	371, 523, 592
HpyAV	CCTTC	3 cut(s)	173, 466, 523
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4IV	ACGT	3 cut(s)	84, 525, 742
HpyCH4V	TGCA	4 cut(s)	337, 436, 695, 715
HpyF3I	CTNAG	1 cut(s)	776
HpySE526I	ACGT	3 cut(s)	84, 525, 742
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	4 cut(s)	263, 346, 369, 692
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	2 cut(s)	672, 772
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	2 cut(s)	199, 207
Lsp1109I	GCAGC	2 cut(s)	82, 679
LweI	GCATC	4 cut(s)	82, 499, 586, 714
MaeI	CTAG	2 cut(s)	255, 666
MaeII	ACGT	3 cut(s)	84, 525, 742
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	674, 774
MboI	GATC	2 cut(s)	672, 772
MboII	GAAGA	7 cut(s)	25, 25, 67, 131, 142, 692, 715
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	7 cut(s)	21, 243, 294, 308, 446, 585, 651
MmeI	TCCRAC	2 cut(s)	293, 508
MseI	TTAA	3 cut(s)	290, 422, 495
MslI	CAYNNNNRTG	2 cut(s)	347, 710
MspI	CCGG	2 cut(s)	197, 377
MspR9I	CCNGG	2 cut(s)	78, 197
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	620
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	672, 772
NlaIII	CATG	4 cut(s)	263, 346, 369, 692
NmuCI	GTSAC	1 cut(s)	385
NruI	TCGCGA	1 cut(s)	620
NspI	RCATGY	1 cut(s)	692
PceI	AGGCCT	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	544
PflFI	GACNNNGTC	1 cut(s)	316
PfoI	TCCNGGA	2 cut(s)	76, 195
PkrI	GCNGC	2 cut(s)	72, 694
Ppu21I	YACGTR	1 cut(s)	743
PsiI	TTATAA	1 cut(s)	784
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	316
RruI	TCGCGA	1 cut(s)	620
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
RseI	CAYNNNNRTG	2 cut(s)	347, 710
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	290, 422, 495
SatI	GCNGC	2 cut(s)	71, 693
Sau3AI	GATC	2 cut(s)	672, 772
ScrFI	CCNGG	2 cut(s)	78, 197
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	4 cut(s)	82, 499, 586, 714
SmiMI	CAYNNNNRTG	2 cut(s)	347, 710
SnaBI	TACGTA	1 cut(s)	743
Sse9I	AATT	7 cut(s)	21, 243, 294, 308, 446, 585, 651
SseBI	AGGCCT	1 cut(s)	104
SspMI	CTAG	2 cut(s)	255, 666
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	76, 195
StyI	CCWWGG	3 cut(s)	223, 259, 303
TaaI	ACNGT	1 cut(s)	612
TaiI	ACGT	3 cut(s)	87, 528, 745
TaqI	TCGA	1 cut(s)	580
TasI	AATT	7 cut(s)	21, 243, 294, 308, 446, 585, 651
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	3 cut(s)	290, 422, 495
Tru9I	TTAA	3 cut(s)	290, 422, 495
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	2 cut(s)	70, 692
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	4 cut(s)	26, 365, 459, 505
TspRI	CASTG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	316
XapI	RAATTY	2 cut(s)	21, 651
XceI	RCATGY	1 cut(s)	692
XspI	CTAG	2 cut(s)	255, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.