Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

8991455 .. 8993016

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG097300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAAGAATTAGCAAAGCTAGGGAGCTCTCTTCCGGTGCCTTGTGTTCAGGAGCTTGCGAAAGAGCCATTAACTACAGTCCCACACCGATATGTTCGCCCTGATCAAGATCCTCCCTTCATTTCTGGTATGGCCACTTCTTCACCTCAAGTACCAGTGATCGACATGAACAAGTTACTTTCAGAAGAAACCATGATAGCAGAGTTGCAGGAGTTCCACCTTGCTTGCAGAGAATGGGGTTTCTTCCAGCTGATAAATCATGGAGTTGGTGAAACTTTGTTGGAGAGTGTGAAGTCAGGGATTCAAGAATTCTTCAACATATTCTACTTGATCACACTCCCAAAACATTTGAGGAAGCCACATTTATTTCCCAATATTCCTCAACCACTAAGAGATAACTTAGAAGTGTACTCTGCGGAACTAGAAGATCTTGCCAAGAAGATTCTTGACCTCATGGCAAAAGCACTGGGAGTGGATGCTAACTATATAAAAGAGTTGTTTGACCAAGGGACTCAAATGTTTAGGATGAACTATTATCCACCATGTAAGCAACCAGAGCTTGTCATTGGCCTTAACCCTCACTCAGATGCTGTTGGATTGACCATCCTCCTCCAAGTGAATGAAATGGAAGGCCTTCAGGTTAGAAAAGATGGTATGTGGATTCCGATTAAACCCCTAAACAATGCTTTCGTCGTCAACGTTGGAGATATTTTGGAGATTGTGACGAATGGAACATACCGTAGCATTGAGCATCGGGCAACAGTGAACCAGGAGAAGGAAAGGCTGTCAATAGCCACATTTTACAGTCCAAAATTGGAAGGAGATATGGGTCCTGCTCCGAACCTCATTACTCCAGAGAGACCAGCATTGTTCAAGAGAATAGGTGTTGCAGACTACTTCAGGGGATTTTTTGAACGCAAACTCGATGGGAAATCATACATAGATGTCATGAGGATTCAACATGGTGAGAATGGCAAAGGCACCCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

330

Amino Acids

37.36

Weight (kDa)

5.48

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 106	2.7e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	171 - 270	5.4e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 980
AciI	CCGC	1 cut(s)	416
AclI	AACGTT	1 cut(s)	699
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	2 cut(s)	620, 883
AfaI	GTAC	2 cut(s)	153, 410
AfiI	CCNNNNNNNGG	1 cut(s)	775
AgsI	TTSAA	5 cut(s)	305, 316, 874, 914, 959
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	5 cut(s)	19, 27, 55, 250, 559
AluI	AGCT	5 cut(s)	19, 27, 55, 250, 559
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	3 cut(s)	132, 568, 631
ApoI	RAATTY	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	830
AsuHPI	GGTGA	3 cut(s)	135, 281, 977
AvaII	GGWCC	1 cut(s)	830
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	2 cut(s)	37, 980
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	121, 153
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	3 cut(s)	611, 644, 920
BciT130I	CCWGG	1 cut(s)	770
BclI	TGATCA	2 cut(s)	103, 330
BcoDI	GTCTC	1 cut(s)	853
BfaI	CTAG	3 cut(s)	20, 422, 991
BfmI	CTRYAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	770
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	1 cut(s)	830
BmiI	GGNNCC	3 cut(s)	39, 831, 982
BmrFI	CCNGG	1 cut(s)	770
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	3 cut(s)	466, 577, 760
BmuI	ACTGGG	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	837
BpuEI	CTTGAG	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	853
BsaJI	CCNNGG	1 cut(s)	505
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse1I	ACTGG	2 cut(s)	155, 471
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	770
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	3 cut(s)	481, 531, 603
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	2 cut(s)	155, 471
BseRI	GAGGAG	1 cut(s)	599
BshFI	GGCC	3 cut(s)	134, 570, 633
BshNI	GGYRCC	2 cut(s)	37, 980
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	65, 523
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	1 cut(s)	853
BsmFI	GGGAC	2 cut(s)	65, 523
BsnI	GGCC	3 cut(s)	134, 570, 633
Bso31I	GGTCTC	1 cut(s)	853
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	5 cut(s)	103, 109, 159, 330, 427
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	3 cut(s)	134, 570, 633
BspCNI	CTCAG	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	948
BspLI	GGNNCC	3 cut(s)	39, 831, 982
BspPI	GGATC	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	37, 980
BspTNI	GGTCTC	1 cut(s)	853
BsrI	ACTGG	2 cut(s)	155, 471
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	5 cut(s)	103, 109, 159, 330, 427
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	4 cut(s)	79, 740, 763, 806
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	57, 226
BstDEI	CTNAG	3 cut(s)	389, 400, 583
BstF5I	GGATG	3 cut(s)	481, 531, 603
BstKTI	GATC	5 cut(s)	106, 112, 162, 333, 430
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	5 cut(s)	103, 109, 159, 330, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	556
BstNI	CCWGG	1 cut(s)	770
BstSCI	CCNGG	1 cut(s)	768
BstSFI	CTRYAG	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	109, 427
BstYI	RGATCY	2 cut(s)	109, 427
BsuRI	GGCC	3 cut(s)	134, 570, 633
BtsCI	GGATG	3 cut(s)	481, 531, 603
BtsIMutI	CAGTG	3 cut(s)	162, 464, 768
Cac8I	GCNNGC	2 cut(s)	57, 226
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	948
Cfr13I	GGNCC	1 cut(s)	830
Csp6I	GTAC	2 cut(s)	152, 409
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CviAII	CATG	7 cut(s)	166, 193, 260, 454, 543, 949, 962
CviQI	GTAC	2 cut(s)	152, 409
DdeI	CTNAG	3 cut(s)	389, 400, 583
DpnI	GATC	5 cut(s)	105, 111, 161, 332, 429
DpnII	GATC	5 cut(s)	103, 109, 159, 330, 427
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	853
Eco47I	GGWCC	1 cut(s)	830
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	620, 883
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	830
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	768
EcoT14I	CCWWGG	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	7 cut(s)	169, 196, 263, 457, 546, 952, 965
FaqI	GGGAC	2 cut(s)	65, 523
FatI	CATG	7 cut(s)	165, 192, 259, 453, 542, 948, 961
FbaI	TGATCA	2 cut(s)	103, 330
FokI	GGATG	3 cut(s)	488, 538, 590
FriOI	GRGCYC	1 cut(s)	29
FspBI	CTAG	3 cut(s)	20, 422, 991
GsuI	CTGGAG	1 cut(s)	837
HaeIII	GGCC	3 cut(s)	134, 570, 633
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	7 cut(s)	169, 196, 263, 457, 546, 952, 965
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	5 cut(s)	301, 442, 511, 661, 955
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	135, 281, 977
Hpy166II	GTNNAC	3 cut(s)	409, 697, 766
Hpy188I	TCNGA	4 cut(s)	184, 586, 666, 840
Hpy188III	TCNNGA	7 cut(s)	50, 107, 305, 446, 854, 874, 949
Hpy8I	GTNNAC	3 cut(s)	409, 697, 766
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	5 cut(s)	127, 623, 644, 769, 812
HpyCH4III	ACNGT	4 cut(s)	79, 740, 763, 806
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	3 cut(s)	208, 228, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	556
HpyF3I	CTNAG	3 cut(s)	389, 400, 583
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	7 cut(s)	169, 196, 263, 457, 546, 952, 965
Ksp22I	TGATCA	2 cut(s)	103, 330
Kzo9I	GATC	5 cut(s)	103, 109, 159, 330, 427
LmnI	GCTCC	3 cut(s)	24, 52, 841
LweI	GCATC	3 cut(s)	466, 577, 760
MaeI	CTAG	3 cut(s)	20, 422, 991
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	2 cut(s)	174, 721
MalI	GATC	5 cut(s)	105, 111, 161, 332, 429
MboI	GATC	5 cut(s)	103, 109, 159, 330, 427
MboII	GAAGA	8 cut(s)	17, 23, 132, 197, 235, 304, 437, 451
MflI	RGATCY	2 cut(s)	109, 427
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	3 cut(s)	8, 308, 812
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	3 cut(s)	261, 574, 682
Mox20I	TGGCCA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	633
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	3 cut(s)	71, 573, 669
MslI	CAYNNNNRTG	2 cut(s)	90, 585
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	770
MwoI	GCNNNNNNNGC	1 cut(s)	556
NdeII	GATC	5 cut(s)	103, 109, 159, 330, 427
NlaIII	CATG	7 cut(s)	169, 196, 263, 457, 546, 952, 965
NlaIV	GGNNCC	3 cut(s)	39, 831, 982
NmuCI	GTSAC	1 cut(s)	721
PagI	TCATGA	1 cut(s)	948
PceI	AGGCCT	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	4 cut(s)	301, 442, 661, 955
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PpuMI	RGGWCCY	1 cut(s)	830
Psp124BI	GAGCTC	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	830
Psp6I	CCWGG	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	768
PspN4I	GGNNCC	3 cut(s)	39, 831, 982
PspPI	GGNCC	1 cut(s)	830
PspPPI	RGGWCCY	1 cut(s)	830
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	109, 427
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	2 cut(s)	153, 410
RsaNI	GTAC	2 cut(s)	152, 409
RseI	CAYNNNNRTG	2 cut(s)	90, 585
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	71, 573, 669
Sau3AI	GATC	5 cut(s)	103, 109, 159, 330, 427
Sau96I	GGNCC	1 cut(s)	830
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	3 cut(s)	466, 577, 760
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	830
SmiMI	CAYNNNNRTG	2 cut(s)	90, 585
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	8, 308, 812
SseBI	AGGCCT	1 cut(s)	633
SsiI	CCGC	1 cut(s)	416
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	3 cut(s)	20, 422, 991
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	768
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	4 cut(s)	79, 740, 763, 806
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	2 cut(s)	162, 924
TasI	AATT	3 cut(s)	8, 308, 812
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	4 cut(s)	301, 442, 661, 955
Tru1I	TTAA	3 cut(s)	71, 573, 669
Tru9I	TTAA	3 cut(s)	71, 573, 669
TscAI	CASTG	3 cut(s)	162, 471, 768
TseFI	GTSAC	1 cut(s)	721
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	4 cut(s)	109, 182, 542, 636
TspRI	CASTG	3 cut(s)	162, 471, 768
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	3 cut(s)	20, 422, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.