Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

3751381 .. 3760449

Gene Structure 9069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06513.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCAAAAGCACTGGGAGTGGAAGCTAACTATATGAGAGAGTTGTTTGACCAAGGGACTCAAATGTTTAGGATGAACTATTATCCACCATGTAAGCAACCAGAGCTCGTCATTGGCCTTAACCCTCACTCAGATCCTGTTGGATTGACCATCCTCCTCCAAGTGAATGAAATGGAAGGTCTTCAGGTTAGGAAAGATGGAAGGTGGACTCCGATTAAACCCCTAAACAATCCTTTCATCGTCAACGTCGGAGATATTTTGGAGATTGTGACGAATGGAATTTACCGTAGCATTGAGCATCGGGCTACGGTGAACCAGGAGAAGGAGAGGCTGTCGATAGCTACTTTTTACAGTCCAAACTTGGGAGGAGACCTGGGTCCTGCTCCGAGCCTCATTACTCCGGAGACACCAGCATTGTTCAAGAGAATAGGTGTTGCAGACTACTTCAGGGGAATTTTTGCCCGCAAACTCGAGGGGAAGTCGTACATAGATGTCATGAGGATTCAACATGGTGATGAGGATGGCAATGGCTCCCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

181

Amino Acids

20.18

Weight (kDa)

5.66

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	65 - 173	5.5e-31	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	220 - 319	6.8e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	1 cut(s)	463
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	279, 453
AcuI	CTGAAG	2 cut(s)	167, 430
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	2 cut(s)	322, 362
AgsI	TTSAA	2 cut(s)	421, 506
AjnI	CCWGG	2 cut(s)	315, 372
AluBI	AGCT	3 cut(s)	26, 106, 341
AluI	AGCT	3 cut(s)	26, 106, 341
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	2 cut(s)	363, 398
AlwI	GGATC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	279, 453
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	322, 524
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	108
BccI	CCATC	3 cut(s)	158, 191, 515
BciT130I	CCWGG	2 cut(s)	317, 374
BcoDI	GTCTC	2 cut(s)	363, 398
BfaI	CTAG	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	317, 374
Bme18I	GGWCC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	378, 532
BmrFI	CCNGG	2 cut(s)	317, 374
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	23
BoxI	GACNNNNGTC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	52, 373
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 362
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	532
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	317, 374
BseDI	CCNNGG	2 cut(s)	52, 373
BseGI	GGATG	3 cut(s)	78, 150, 526
BseLI	CCNNNNNNNGG	2 cut(s)	322, 362
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	146, 381
BshFI	GGCC	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	322, 362
BsmAI	GTCTC	2 cut(s)	363, 398
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	117
Bso31I	GGTCTC	1 cut(s)	363
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	463
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	143
BspEI	TCCGGA	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	378, 532
BspPI	GGATC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	52, 373
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	2 cut(s)	317, 374
Bst4CI	ACNGT	3 cut(s)	287, 310, 353
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	1 cut(s)	130
BstF5I	GGATG	3 cut(s)	78, 150, 526
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	2 cut(s)	363, 398
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	2 cut(s)	317, 374
BstPAI	GACNNNNGTC	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	315, 372
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	78, 150, 526
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	463
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	3 cut(s)	90, 496, 509
CviJI	RGCY	8 cut(s)	26, 106, 117, 305, 331, 341, 390, 531
CviKI_1	RGCY	8 cut(s)	26, 106, 117, 305, 331, 341, 390, 531
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	167, 430
Eco88I	CYCGRG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	315, 372
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	3 cut(s)	93, 499, 512
FaiI	YATR	6 cut(s)	33, 35, 91, 488, 497, 510
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	89, 495, 508
FauI	CCCGC	1 cut(s)	470
FokI	GGATG	3 cut(s)	85, 137, 533
FriOI	GRGCYC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	3 cut(s)	93, 499, 512
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	58, 208, 502
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	322, 524
Hpy166II	GTNNAC	3 cut(s)	207, 244, 313
Hpy188I	TCNGA	4 cut(s)	133, 213, 251, 387
Hpy188III	TCNNGA	3 cut(s)	401, 421, 496
Hpy8I	GTNNAC	3 cut(s)	207, 244, 313
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	170, 195, 316
HpyCH4III	ACNGT	3 cut(s)	287, 310, 353
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	93, 499, 512
Kpn2I	TCCGGA	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	388, 536
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	541
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	279, 453
MlyI	GAGTC	2 cut(s)	52, 202
MmeI	TCCRAC	2 cut(s)	121, 229
MnlI	CCTC	9 cut(s)	135, 164, 167, 321, 359, 401, 466, 492, 511
MroI	TCCGGA	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	2 cut(s)	120, 216
MslI	CAYNNNNRTG	1 cut(s)	513
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	317, 374
MvaI	CCWGG	2 cut(s)	317, 374
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	93, 499, 512
NlaIV	GGNNCC	2 cut(s)	378, 532
NmuCI	GTSAC	1 cut(s)	268
PaeR7I	CTCGAG	1 cut(s)	470
PagI	TCATGA	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	502
PleI	GAGTC	2 cut(s)	52, 202
PpsI	GAGTC	2 cut(s)	52, 202
PpuMI	RGGWCCY	1 cut(s)	377
PshAI	GACNNNNGTC	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	315, 372
PspGI	CCWGG	2 cut(s)	315, 372
PspN4I	GGNNCC	2 cut(s)	378, 532
PspPI	GGNCC	1 cut(s)	377
PspPPI	RGGWCCY	1 cut(s)	377
PspXI	VCTCGAGB	1 cut(s)	470
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	120, 216
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	2 cut(s)	52, 202
ScrFI	CCNGG	2 cut(s)	317, 374
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	9 cut(s)	28, 108, 181, 189, 206, 249, 343, 375, 433
SfaNI	GCATC	1 cut(s)	307
Sfr274I	CTCGAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	377
SlaI	CTCGAG	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	2 cut(s)	279, 453
SsiI	CCGC	1 cut(s)	463
SspMI	CTAG	1 cut(s)	541
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	315, 372
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	3 cut(s)	287, 310, 353
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	335, 471
TasI	AATT	2 cut(s)	279, 453
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	2 cut(s)	120, 216
Tru9I	TTAA	2 cut(s)	120, 216
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	89, 183, 226
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	2 cut(s)	279, 453
XhoI	CTCGAG	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.