Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

38669304 .. 38682594

Gene Structure 13291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1271400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAAGAAAGGGCATTCGCCGGGAAGAGCTTGTACGGTGGTTCTCTTCTTGTTCCTAGTGTTCAAGAATTAGTAAAGAAGCCAATACTCACAATCCCAACCAGATACATACAGCCTCATCATCAAGAGATCATCAGTTCTGATCATCATGCTCATCAAATACCATCCATTGACATGCAGAAATTGCTTTCACAAGAATCAACCATTTCTGAAGCTGAACTAGCCAGGCTCCATTTTGCTTGCCAAGAGTGGGGTTTCTTTCAGTTGGTGAACCATGGTGTGAGCTCTTCCTTGTTGGAGAAAATGAAGACAGAAACTCAAGAGTTCTTCAACCTACCCATGGAAGAGAAGAAAATATTTTCGCAACAGCCAGGAGACATTGAAGGTTTTGGACAATCCTTTGTAGTTTCTGAAGAGCAAAAACTCGATTGGGCTGACACTTTCTTCTTGACCACCCTTCCTGTCCAACTGAGGAAGCCTCGCTTACTCCCAAAACTCCCTTCTCCTTTCAGAGAGACTTTAGAAACTTACTCATTGGAACTGAAAAACCTAGCCATGACTATCCTATCACAAATGGAAAAAGCTTTGCAGATGGAAACCAATGAAGCGACCAACATATTCGAAGGTGCATTGCAAGCGGTGAGGGTGAACTATTACCCTCCGTGTCCTCAGCCGGGGAAAGTCCTCGGTCTGACCCCTCACTCTGATGGTGGAGCTCTCACCATCCTCCTACAAGTCAATGAAATGGATGGCCTCCAAGTAAAGAAAGAAGGGATTTGGGTTCCTGTGAAGCCACTACCAGATGCCTTTATTGTGAATATTGGAGACGTTCTAGAGGTTATAACAAATGGGATGTATCGTAGCATTGAACATCGTGCAACTGTGAACTCTGAAAAAGAAAGGCTCTCAATCGCCACATTTTACAACCCCAGAGTTGATGGTGAAATCGGCCCGGCCTCTAGCTTGATCACTGAGCAAACACCTGCAGCATTTAAAAGGATGAGTGTTGAAGAATATTTCAAAGCATTTTTTGATCGTAAGCTTCATGGAAAGTCTTTTCTTGACGAATTGAGGATTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

40.75

Weight (kDa)

5.66

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	54 - 164	3.6e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 310	9.3e-35	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	842
AarI	CACCTGC	1 cut(s)	991
Acc36I	ACCTGC	1 cut(s)	991
AciI	CCGC	1 cut(s)	638
AcuI	CTGAAG	2 cut(s)	231, 432
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	250, 340, 674
AgsI	TTSAA	6 cut(s)	65, 331, 383, 869, 1010, 1021
AjnI	CCWGG	2 cut(s)	224, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	7 cut(s)	30, 215, 285, 584, 716, 963, 1042
AluI	AGCT	7 cut(s)	30, 215, 285, 584, 716, 963, 1042
Alw21I	GWGCWC	2 cut(s)	287, 718
Alw26I	GTCTC	3 cut(s)	369, 509, 819
AoxI	GGCC	3 cut(s)	751, 949, 954
ApeKI	GCWGC	1 cut(s)	986
AspS9I	GGNCC	1 cut(s)	950
AsuC2I	CCSGG	3 cut(s)	22, 675, 953
AsuHPI	GGTGA	5 cut(s)	280, 652, 658, 712, 953
AsuII	TTCGAA	1 cut(s)	621
BanII	GRGCYC	2 cut(s)	287, 718
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	287, 718
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	998
BccI	CCATC	6 cut(s)	172, 586, 701, 731, 743, 932
BciT130I	CCWGG	2 cut(s)	226, 372
BclI	TGATCA	2 cut(s)	142, 966
BcnI	CCSGG	3 cut(s)	22, 675, 953
BcoDI	GTCTC	3 cut(s)	369, 509, 819
BfaI	CTAG	5 cut(s)	57, 221, 551, 833, 960
BfmI	CTRYAG	1 cut(s)	984
BfuAI	ACCTGC	1 cut(s)	991
BisI	GCNGC	1 cut(s)	987
BlsI	GCNGC	1 cut(s)	988
Bme1390I	CCNGG	5 cut(s)	22, 226, 372, 675, 953
BmgT120I	GGNCC	1 cut(s)	950
BmiI	GGNNCC	2 cut(s)	230, 783
BmrFI	CCNGG	5 cut(s)	22, 226, 372, 675, 953
BmsI	GCATC	1 cut(s)	793
BpiI	GAAGAC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
Bpu10I	CCTNAGC	1 cut(s)	669
Bpu14I	TTCGAA	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	303
BpuMI	CCSGG	3 cut(s)	22, 675, 953
BsaJI	CCNNGG	4 cut(s)	274, 339, 674, 685
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 340, 674
Bse3DI	GCAATG	1 cut(s)	629
BseBI	CCWGG	2 cut(s)	226, 372
BseDI	CCNNGG	4 cut(s)	274, 339, 674, 685
BseGI	GGATG	5 cut(s)	164, 723, 754, 858, 1005
BseLI	CCNNNNNNNGG	3 cut(s)	250, 340, 674
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	3 cut(s)	461, 683, 963
BseXI	GCAGC	1 cut(s)	998
BshFI	GGCC	3 cut(s)	753, 951, 956
BsiHKAI	GWGCWC	2 cut(s)	287, 718
BsiSI	CCGG	3 cut(s)	21, 674, 953
BslI	CCNNNNNNNGG	3 cut(s)	250, 340, 674
BsmAI	GTCTC	3 cut(s)	369, 509, 819
BsmBI	CGTCTC	1 cut(s)	819
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	3 cut(s)	753, 951, 956
Bsp119I	TTCGAA	1 cut(s)	621
Bsp1286I	GDGCHC	2 cut(s)	287, 718
Bsp143I	GATC	4 cut(s)	129, 142, 966, 1033
Bsp19I	CCATGG	2 cut(s)	274, 339
BspACI	CCGC	1 cut(s)	638
BspANI	GGCC	3 cut(s)	753, 951, 956
BspCNI	CTCAG	3 cut(s)	462, 682, 964
BspLI	GGNNCC	2 cut(s)	230, 783
BspMAI	CTGCAG	1 cut(s)	988
BspMI	ACCTGC	1 cut(s)	991
BspQI	GCTCTTC	3 cut(s)	20, 292, 408
BspT104I	TTCGAA	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	629
BssECI	CCNNGG	4 cut(s)	274, 339, 674, 685
BssMI	GATC	4 cut(s)	129, 142, 966, 1033
BssT1I	CCWWGG	2 cut(s)	274, 339
Bst2UI	CCWGG	2 cut(s)	226, 372
Bst4CI	ACNGT	2 cut(s)	38, 883
Bst6I	CTCTTC	5 cut(s)	20, 51, 292, 339, 408
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	621
BstC8I	GCNNGC	2 cut(s)	241, 636
BstDEI	CTNAG	3 cut(s)	470, 669, 972
BstDSI	CCRYGG	2 cut(s)	274, 339
BstF5I	GGATG	5 cut(s)	164, 723, 754, 858, 1005
BstKTI	GATC	4 cut(s)	132, 145, 969, 1036
BstMAI	GTCTC	3 cut(s)	369, 509, 819
BstMBI	GATC	4 cut(s)	129, 142, 966, 1033
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 221, 635
BstNI	CCWGG	2 cut(s)	226, 372
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	5 cut(s)	20, 224, 370, 673, 951
BstSFI	CTRYAG	1 cut(s)	984
BstV1I	GCAGC	1 cut(s)	998
BstV2I	GAAGAC	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	753, 951, 956
BtgI	CCRYGG	2 cut(s)	274, 339
BtsCI	GGATG	5 cut(s)	164, 723, 754, 858, 1005
BtsIMutI	CAGTG	1 cut(s)	969
BveI	ACCTGC	1 cut(s)	991
Cac8I	GCNNGC	2 cut(s)	241, 636
Cfr13I	GGNCC	1 cut(s)	950
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	6 cut(s)	149, 175, 275, 340, 556, 1046
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	470, 669, 972
DpnI	GATC	4 cut(s)	131, 144, 968, 1035
DpnII	GATC	4 cut(s)	129, 142, 966, 1033
DraI	TTTAAA	1 cut(s)	994
Eam1104I	CTCTTC	5 cut(s)	20, 51, 292, 339, 408
EarI	CTCTTC	5 cut(s)	20, 51, 292, 339, 408
Ecl136II	GAGCTC	2 cut(s)	285, 716
Eco130I	CCWWGG	2 cut(s)	274, 339
Eco24I	GRGCYC	2 cut(s)	287, 718
Eco53kI	GAGCTC	2 cut(s)	285, 716
Eco57I	CTGAAG	2 cut(s)	231, 432
EcoICRI	GAGCTC	2 cut(s)	285, 716
EcoRII	CCWGG	2 cut(s)	224, 370
EcoT14I	CCWWGG	2 cut(s)	274, 339
EcoT38I	GRGCYC	2 cut(s)	287, 718
ErhI	CCWWGG	2 cut(s)	274, 339
Esp3I	CGTCTC	1 cut(s)	819
FaeI	CATG	6 cut(s)	152, 178, 278, 343, 559, 1049
FaiI	YATR	9 cut(s)	110, 150, 176, 276, 341, 557, 617, 842, 1047
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FatI	CATG	6 cut(s)	148, 174, 274, 339, 555, 1045
FbaI	TGATCA	2 cut(s)	142, 966
Fnu4HI	GCNGC	1 cut(s)	987
FokI	GGATG	5 cut(s)	151, 710, 761, 865, 1012
FriOI	GRGCYC	2 cut(s)	287, 718
Fsp4HI	GCNGC	1 cut(s)	987
FspBI	CTAG	5 cut(s)	57, 221, 551, 833, 960
GluI	GCNGC	1 cut(s)	987
HaeIII	GGCC	3 cut(s)	753, 951, 956
HapII	CCGG	3 cut(s)	21, 674, 953
Hin1II	CATG	6 cut(s)	152, 178, 278, 343, 559, 1049
HindIII	AAGCTT	2 cut(s)	582, 1040
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	3 cut(s)	21, 674, 953
HphI	GGTGA	5 cut(s)	280, 652, 658, 712, 953
Hpy166II	GTNNAC	3 cut(s)	271, 649, 886
Hpy188I	TCNGA	7 cut(s)	142, 211, 412, 512, 693, 706, 892
Hpy188III	TCNNGA	6 cut(s)	65, 125, 320, 448, 833, 1061
Hpy8I	GTNNAC	3 cut(s)	271, 649, 886
HpyAV	CCTTC	5 cut(s)	377, 467, 510, 617, 764
HpyCH4III	ACNGT	2 cut(s)	38, 883
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	6 cut(s)	178, 589, 629, 634, 878, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 221, 635
HpyF3I	CTNAG	3 cut(s)	470, 669, 972
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	6 cut(s)	152, 178, 278, 343, 559, 1049
Ksp22I	TGATCA	2 cut(s)	142, 966
Kzo9I	GATC	4 cut(s)	129, 142, 966, 1033
LguI	GCTCTTC	3 cut(s)	20, 292, 408
LmnI	GCTCC	2 cut(s)	234, 713
Lsp1109I	GCAGC	1 cut(s)	998
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	5 cut(s)	57, 221, 551, 833, 960
MaeII	ACGT	1 cut(s)	828
MalI	GATC	4 cut(s)	131, 144, 968, 1035
MboI	GATC	4 cut(s)	129, 142, 966, 1033
MhlI	GDGCHC	2 cut(s)	287, 718
MluCI	AATT	3 cut(s)	68, 182, 1067
MmeI	TCCRAC	2 cut(s)	276, 490
MseI	TTAA	2 cut(s)	993, 1077
MslI	CAYNNNNRTG	2 cut(s)	173, 705
MspI	CCGG	3 cut(s)	21, 674, 953
MspR9I	CCNGG	5 cut(s)	22, 226, 372, 675, 953
Mva1269I	GAATGC	1 cut(s)	14
MvaI	CCWGG	2 cut(s)	226, 372
MwoI	GCNNNNNNNGC	3 cut(s)	184, 221, 635
NciI	CCSGG	3 cut(s)	22, 675, 953
NcoI	CCATGG	2 cut(s)	274, 339
NdeII	GATC	4 cut(s)	129, 142, 966, 1033
NlaIII	CATG	6 cut(s)	152, 178, 278, 343, 559, 1049
NlaIV	GGNNCC	2 cut(s)	230, 783
NspI	RCATGY	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	621
PaqCI	CACCTGC	1 cut(s)	991
PciSI	GCTCTTC	3 cut(s)	20, 292, 408
PctI	GAATGC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	988
PsiI	TTATAA	1 cut(s)	842
Psp124BI	GAGCTC	2 cut(s)	287, 718
Psp6I	CCWGG	2 cut(s)	224, 370
PspGI	CCWGG	2 cut(s)	224, 370
PspN4I	GGNNCC	2 cut(s)	230, 783
PspPI	GGNCC	1 cut(s)	950
PstI	CTGCAG	1 cut(s)	988
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	173, 705
SacI	GAGCTC	2 cut(s)	287, 718
SapI	GCTCTTC	3 cut(s)	20, 292, 408
SaqAI	TTAA	2 cut(s)	993, 1077
SatI	GCNGC	1 cut(s)	987
Sau3AI	GATC	4 cut(s)	129, 142, 966, 1033
Sau96I	GGNCC	1 cut(s)	950
ScrFI	CCNGG	5 cut(s)	22, 226, 372, 675, 953
SduI	GDGCHC	2 cut(s)	287, 718
SfaNI	GCATC	1 cut(s)	793
SfcI	CTRYAG	1 cut(s)	984
SfuI	TTCGAA	1 cut(s)	621
SmiMI	CAYNNNNRTG	2 cut(s)	173, 705
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	3 cut(s)	68, 182, 1067
SsiI	CCGC	1 cut(s)	638
SspI	AATATT	3 cut(s)	357, 820, 1016
SspMI	CTAG	5 cut(s)	57, 221, 551, 833, 960
SstI	GAGCTC	2 cut(s)	287, 718
StyD4I	CCNGG	5 cut(s)	20, 224, 370, 673, 951
StyI	CCWWGG	2 cut(s)	274, 339
TaaI	ACNGT	2 cut(s)	38, 883
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	2 cut(s)	426, 621
TaqII	GACCGA	1 cut(s)	677
TasI	AATT	3 cut(s)	68, 182, 1067
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	993, 1077
Tru9I	TTAA	2 cut(s)	993, 1077
TscAI	CASTG	1 cut(s)	976
TseI	GCWGC	1 cut(s)	986
TspDTI	ATGAA	4 cut(s)	320, 618, 756, 1034
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	1 cut(s)	976
XbaI	TCTAGA	1 cut(s)	832
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	5 cut(s)	57, 221, 551, 833, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.