Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011332.1

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1184

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgaagacagaaattcaagacttcttcaacctcccgatagaggagaagaaaaggttttggcagcatccaggagacgtggagggttttggacaggcctttgtcgtttctgaagagcaaaaacttgattgggctgacattttcttcctcaccacccttcctgtccagatgaggaagcctcacttattcccggagctccccactcctttcaaagacaccttggagatttactcaatggaattggaaaacctagccatggctatcctaacccaaatggaaaatgctttaaaaattgaagccaaggaattgaccaagtcgtttgtaggtggaatgcaatccatgaggatgaactattatcctccatgtccacagccggagaaagtcaccggccttactcctcattcggacgccgtaggtctaaccatccttctgcaagtcaatgaaatggaaggtctccaagtcaagaaggatgggatttggtttcctgttaagccacttccagatgccttcattgtcaacgttggagacattttagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

178

Amino Acids

20.37

Weight (kDa)

4.79

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	40, 253
AgsI	TTSAA	4 cut(s)	17, 28, 208, 293
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	3 cut(s)	66, 455, 516
AoxI	GGCC	2 cut(s)	93, 385
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	139, 373
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	428, 461
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	3 cut(s)	66, 455, 516
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	69, 188
BmgBI	CACGTC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	69, 188
BmsI	GCATC	2 cut(s)	73, 490
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	4 cut(s)	160, 192, 212, 244
BpuMI	CCSGG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	3 cut(s)	216, 252, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 253
Bse118I	RCCGGY	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	216, 252, 297
BseGI	GGATG	4 cut(s)	64, 348, 420, 472
BseLI	CCNNNNNNNGG	2 cut(s)	40, 253
BseRI	GAGGAG	2 cut(s)	56, 384
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	2 cut(s)	95, 387
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	188, 371, 384
BslI	CCNNNNNNNGG	2 cut(s)	40, 253
BsmAI	GTCTC	3 cut(s)	66, 455, 516
BsmBI	CGTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	95, 387
Bso31I	GGTCTC	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	2 cut(s)	95, 387
BspQI	GCTCTTC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	3 cut(s)	216, 252, 297
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	3 cut(s)	216, 252, 297
Bst2UI	CCWGG	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	405
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	4 cut(s)	64, 348, 420, 472
BstMAI	GTCTC	3 cut(s)	66, 455, 516
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	2 cut(s)	67, 186
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	95, 387
BtgI	CCRYGG	1 cut(s)	252
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	4 cut(s)	64, 348, 420, 472
Cfr10I	RCCGGY	1 cut(s)	383
CseI	GACGC	1 cut(s)	413
CviAII	CATG	3 cut(s)	253, 337, 360
DraI	TTTAAA	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	3 cut(s)	216, 252, 297
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	455
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	3 cut(s)	216, 252, 297
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	3 cut(s)	216, 252, 297
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	3 cut(s)	256, 340, 363
FaiI	YATR	3 cut(s)	254, 338, 361
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	3 cut(s)	252, 336, 359
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	4 cut(s)	51, 355, 407, 479
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	95, 387
HapII	CCGG	3 cut(s)	188, 371, 384
HgaI	GACGC	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	256, 340, 363
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HpaII	CCGG	3 cut(s)	188, 371, 384
HphI	GGTGA	2 cut(s)	139, 373
Hpy166II	GTNNAC	2 cut(s)	365, 514
Hpy188I	TCNGA	2 cut(s)	109, 403
Hpy188III	TCNNGA	5 cut(s)	17, 34, 163, 460, 497
Hpy8I	GTNNAC	2 cut(s)	365, 514
HpyAV	CCTTC	5 cut(s)	164, 434, 440, 457, 514
HpyCH4IV	ACGT	2 cut(s)	75, 516
HpyCH4V	TGCA	2 cut(s)	331, 430
HpySE526I	ACGT	2 cut(s)	75, 516
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	256, 340, 363
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	190, 198
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	73, 490
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	75, 516
MaeIII	GTNAC	1 cut(s)	379
MboII	GAAGA	5 cut(s)	16, 16, 58, 122, 133
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	4 cut(s)	12, 236, 288, 302
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	9 cut(s)	34, 41, 73, 155, 162, 186, 333, 366, 405
MseI	TTAA	2 cut(s)	284, 486
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	3 cut(s)	188, 371, 384
MspR9I	CCNGG	2 cut(s)	69, 188
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	69
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	252
NlaIII	CATG	3 cut(s)	256, 340, 363
NmuCI	GTSAC	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	105
PctI	GAATGC	1 cut(s)	333
PflFI	GACNNNGTC	1 cut(s)	310
PfoI	TCCNGGA	2 cut(s)	67, 186
PkrI	GCNGC	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	284, 486
SatI	GCNGC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	69, 188
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	2 cut(s)	73, 490
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	12, 236, 288, 302
SseBI	AGGCCT	1 cut(s)	95
SspMI	CTAG	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	67, 186
StyI	CCWWGG	3 cut(s)	216, 252, 297
TaiI	ACGT	2 cut(s)	78, 519
TasI	AATT	4 cut(s)	12, 236, 288, 302
Tru1I	TTAA	2 cut(s)	284, 486
Tru9I	TTAA	2 cut(s)	284, 486
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	17, 359, 453, 496
Tth111I	GACNNNGTC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	12
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.