Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Forward (+)

5820080 .. 5822013

Gene Structure 1934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAAGCAAAAGGGGCAGCACAGTGGAGCTCTATCCTAGTTCCATCCGTTCAAGAGATGGTTAAGGAGAAGACGATCACGACCGTTCCTCCTAGGTACGTCCGGTCTGATCAAGACAAAACTGAAGTCGATGATGATTTTGATGTGAAAATTGAGATCCCAATCATCGATATGAAGCGTTTGTGTTCTTCAACCACCATGGATTCTGAGGTTGAGAAACTCGACTTCGCTTGCAAAGAGTGGGGATTTTTCCAGCTTGTAAACCATGGAATAGACTCAAGTTTCTTGGACAAAGTAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAAAAGAAGAAGTTCTGGCAGCGACCAGATGAGATAGAAGGTTTCGGACAAGCTTTTGTGGTTTCAGAAGATCAGAAACTAGATTGGGCAGACTTGTTCTTCCATACCGTGCAACCAGTTGAATTACGCAAGCCTCACTTGTTCCCCAAGCTACCTCTTCCCTTTAGAGATACACTGGAGATGTATTCTTCTGAAGTGCAGAGCGTAGCTAAGATCTTAATAGCGAAAATGGCAAGAGCCCTAGAGATCAAACCAGAGGAACTGGAAAAGTTGTTTGATGATGTTGATTCGGTTCAAAGTATGAGGATGAATTACTACCCACCATGCCCACAACCAGATCAGGTTATTGGTCTAACCCCGCATTCTGATTCGGTCGGACTCACTGTACTGATGCAAGTGAATGACGTTGAAGGTCTCCAAATCAAGAAAGATGGGAAATGGGTTCCTGTTAAACCCCTCCCAAATGCTTTCATTGTCAATATTGGAGACGTCTTAGAGATCATAACTAATGGGACATACCGAAGCATAGAGCATCGCGGAGTTGTGAATTCAGAGAAAGAGAGGCTCTCTATTGCAACGTTTCACAATGTGGGAATGTATAAAGAAGTTGGTCCTGCAAAAAGCCTAGTTGAAAGACAAAAGGTTGCAAGATTCAAAAGGCTGACCATGAAAGAGTATAACGATGGTTTGTTCTCTCGTACTCTCGACGGAAAAGCTTATCTAGATGCTTTGAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

358

Amino Acids

41.04

Weight (kDa)

5.3

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 161	1.1e-31	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	211 - 308	1.4e-35	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	828
AccII	CGCG	1 cut(s)	873
AciI	CCGC	2 cut(s)	695, 873
AclI	AACGTT	1 cut(s)	914
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	883
AcuI	CTGAAG	2 cut(s)	144, 549
AcyI	GRCGYC	1 cut(s)	825
AdeI	CACNNNGTG	1 cut(s)	925
AfaI	GTAC	3 cut(s)	98, 723, 1036
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	9 cut(s)	53, 192, 311, 322, 458, 632, 746, 968, 991
AluBI	AGCT	6 cut(s)	30, 256, 389, 487, 545, 1052
AluI	AGCT	6 cut(s)	30, 256, 389, 487, 545, 1052
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	755, 816
AlwI	GGATC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	17, 355
ApoI	RAATTY	1 cut(s)	883
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
Asp700I	GAANNNNTTC	1 cut(s)	347
AspA2I	CCTAGG	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	947
AvaII	GGWCC	1 cut(s)	947
AvrII	CCTAGG	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	32, 577
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	29, 367
BccI	CCATC	4 cut(s)	52, 52, 761, 1013
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	755, 816
BfaI	CTAG	6 cut(s)	38, 93, 416, 578, 962, 1058
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	2 cut(s)	18, 356
BlnI	CCTAGG	1 cut(s)	92
BlsI	GCNGC	2 cut(s)	19, 357
Bme18I	GGWCC	1 cut(s)	947
BmgT120I	GGNCC	1 cut(s)	947
BmiI	GGNNCC	1 cut(s)	780
BmsI	GCATC	3 cut(s)	717, 877, 1051
BpiI	GAAGAC	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	887, 919
BpmI	CTGGAG	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	262
Bsa29I	ATCGAT	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	755
BsaJI	CCNNGG	4 cut(s)	92, 198, 265, 330
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	3 cut(s)	452, 516, 603
Bse8I	GATNNNNATC	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	4 cut(s)	92, 198, 265, 330
BseGI	GGATG	2 cut(s)	44, 648
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	452, 516, 603
BseXI	GCAGC	2 cut(s)	29, 367
BsgI	GTGCAG	1 cut(s)	554
Bsh1236I	CGCG	1 cut(s)	873
Bsh1285I	CGRYCG	2 cut(s)	84, 711
BshVI	ATCGAT	1 cut(s)	168
BsiEI	CGRYCG	2 cut(s)	84, 711
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	2 cut(s)	755, 816
BsmBI	CGTCTC	1 cut(s)	816
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	1 cut(s)	697
Bso31I	GGTCTC	1 cut(s)	755
Bsp1286I	GDGCHC	2 cut(s)	32, 577
Bsp143I	GATC	8 cut(s)	75, 109, 156, 406, 549, 582, 673, 834
Bsp19I	CCATGG	3 cut(s)	198, 265, 330
BspACI	CCGC	2 cut(s)	695, 873
BspCNI	CTCAG	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	873
BspLI	GGNNCC	1 cut(s)	780
BspPI	GGATC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	755
BsrI	ACTGG	3 cut(s)	452, 516, 603
BssECI	CCNNGG	4 cut(s)	92, 198, 265, 330
BssMI	GATC	8 cut(s)	75, 109, 156, 406, 549, 582, 673, 834
BssNI	GRCGYC	1 cut(s)	825
BssT1I	CCWWGG	4 cut(s)	92, 198, 265, 330
Bst4CI	ACNGT	4 cut(s)	24, 85, 445, 721
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	825
BstC8I	GCNNGC	2 cut(s)	232, 467
BstDEI	CTNAG	3 cut(s)	207, 546, 829
BstDSI	CCRYGG	3 cut(s)	198, 265, 330
BstF5I	GGATG	2 cut(s)	44, 648
BstFNI	CGCG	1 cut(s)	873
BstKTI	GATC	8 cut(s)	78, 112, 159, 409, 552, 585, 676, 837
BstMAI	GTCTC	2 cut(s)	755, 816
BstMBI	GATC	8 cut(s)	75, 109, 156, 406, 549, 582, 673, 834
BstMCI	CGRYCG	2 cut(s)	84, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 566
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	2 cut(s)	29, 367
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	156, 549
BstYI	RGATCY	2 cut(s)	156, 549
Bsu15I	ATCGAT	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	3 cut(s)	198, 265, 330
BtgZI	GCGATG	1 cut(s)	854
BtsCI	GGATG	2 cut(s)	44, 648
BtsIMutI	CAGTG	3 cut(s)	29, 509, 717
Cac8I	GCNNGC	2 cut(s)	232, 467
Cfr13I	GGNCC	1 cut(s)	947
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	3 cut(s)	97, 722, 1035
CviAII	CATG	5 cut(s)	199, 266, 331, 660, 1003
CviQI	GTAC	3 cut(s)	97, 722, 1035
DdeI	CTNAG	3 cut(s)	207, 546, 829
DpnI	GATC	8 cut(s)	77, 111, 158, 408, 551, 584, 675, 836
DpnII	GATC	8 cut(s)	75, 109, 156, 406, 549, 582, 673, 834
DraIII	CACNNNGTG	1 cut(s)	925
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	4 cut(s)	92, 198, 265, 330
Eco24I	GRGCYC	2 cut(s)	32, 577
Eco31I	GGTCTC	1 cut(s)	755
Eco47I	GGWCC	1 cut(s)	947
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	144, 549
EcoICRI	GAGCTC	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	883
EcoT14I	CCWWGG	4 cut(s)	92, 198, 265, 330
EcoT38I	GRGCYC	2 cut(s)	32, 577
ErhI	CCWWGG	4 cut(s)	92, 198, 265, 330
Esp3I	CGTCTC	1 cut(s)	816
FaeI	CATG	5 cut(s)	202, 269, 334, 663, 1006
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	5 cut(s)	198, 265, 330, 659, 1002
FauI	CCCGC	1 cut(s)	702
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	18, 356
FokI	GGATG	2 cut(s)	31, 655
FriOI	GRGCYC	2 cut(s)	32, 577
Fsp4HI	GCNGC	2 cut(s)	18, 356
FspBI	CTAG	6 cut(s)	38, 93, 416, 578, 962, 1058
GluI	GCNGC	2 cut(s)	18, 356
GsuI	CTGGAG	1 cut(s)	533
HapII	CCGG	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	825
Hin1II	CATG	5 cut(s)	202, 269, 334, 663, 1006
HindIII	AAGCTT	2 cut(s)	387, 1050
HinfI	GANTC	8 cut(s)	203, 275, 307, 623, 704, 714, 987, 1071
HpaII	CCGG	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188III	TCNNGA	7 cut(s)	53, 79, 113, 311, 760, 1040, 1058
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	1046
HpyAV	CCTTC	3 cut(s)	335, 368, 740
HpyCH4III	ACNGT	4 cut(s)	24, 85, 445, 721
HpyCH4IV	ACGT	4 cut(s)	99, 741, 825, 914
HpyCH4V	TGCA	7 cut(s)	234, 448, 535, 730, 911, 953, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 566
HpyF3I	CTNAG	3 cut(s)	207, 546, 829
HpySE526I	ACGT	4 cut(s)	99, 741, 825, 914
Hsp92I	GRCGYC	1 cut(s)	825
Hsp92II	CATG	5 cut(s)	202, 269, 334, 663, 1006
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	8 cut(s)	75, 109, 156, 406, 549, 582, 673, 834
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	2 cut(s)	29, 367
LweI	GCATC	3 cut(s)	717, 877, 1051
MaeI	CTAG	6 cut(s)	38, 93, 416, 578, 962, 1058
MaeII	ACGT	4 cut(s)	99, 741, 825, 914
MalI	GATC	8 cut(s)	77, 111, 158, 408, 551, 584, 675, 836
MboI	GATC	8 cut(s)	75, 109, 156, 406, 549, 582, 673, 834
MboII	GAAGA	9 cut(s)	82, 180, 310, 347, 355, 416, 427, 485, 516
MflI	RGATCY	2 cut(s)	156, 549
MhlI	GDGCHC	2 cut(s)	32, 577
MluCI	AATT	4 cut(s)	150, 458, 646, 883
MlyI	GAGTC	2 cut(s)	269, 708
MmeI	TCCRAC	1 cut(s)	691
MnlI	CCTC	8 cut(s)	99, 202, 480, 501, 586, 633, 803, 891
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	3 cut(s)	63, 554, 786
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	697
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	2 cut(s)	14, 566
NcoI	CCATGG	3 cut(s)	198, 265, 330
NdeII	GATC	8 cut(s)	75, 109, 156, 406, 549, 582, 673, 834
NlaIII	CATG	5 cut(s)	202, 269, 334, 663, 1006
NlaIV	GGNNCC	1 cut(s)	780
PctI	GAATGC	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	6 cut(s)	203, 307, 623, 704, 987, 1071
PkrI	GCNGC	2 cut(s)	19, 357
PleI	GAGTC	2 cut(s)	269, 708
PpsI	GAGTC	2 cut(s)	269, 708
Psp124BI	GAGCTC	1 cut(s)	32
Psp1406I	AACGTT	1 cut(s)	914
PspN4I	GGNNCC	1 cut(s)	780
PspPI	GGNCC	1 cut(s)	947
PsuI	RGATCY	2 cut(s)	156, 549
RsaI	GTAC	3 cut(s)	98, 723, 1036
RsaNI	GTAC	3 cut(s)	97, 722, 1035
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	63, 554, 786
SatI	GCNGC	2 cut(s)	18, 356
Sau3AI	GATC	8 cut(s)	75, 109, 156, 406, 549, 582, 673, 834
Sau96I	GGNCC	1 cut(s)	947
SchI	GAGTC	2 cut(s)	269, 708
SduI	GDGCHC	2 cut(s)	32, 577
SfaNI	GCATC	3 cut(s)	717, 877, 1051
SinI	GGWCC	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	4 cut(s)	150, 458, 646, 883
SsiI	CCGC	2 cut(s)	695, 873
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	6 cut(s)	38, 93, 416, 578, 962, 1058
SstI	GAGCTC	1 cut(s)	32
StyI	CCWWGG	4 cut(s)	92, 198, 265, 330
TaaI	ACNGT	4 cut(s)	24, 85, 445, 721
TaiI	ACGT	4 cut(s)	102, 744, 828, 917
TaqI	TCGA	4 cut(s)	129, 168, 222, 1041
TaqII	GACCGA	1 cut(s)	697
TasI	AATT	4 cut(s)	150, 458, 646, 883
TatI	WGTACW	1 cut(s)	721
TfiI	GAWTC	6 cut(s)	203, 307, 623, 704, 987, 1071
Tru1I	TTAA	3 cut(s)	63, 554, 786
Tru9I	TTAA	3 cut(s)	63, 554, 786
TscAI	CASTG	3 cut(s)	29, 516, 724
TseI	GCWGC	2 cut(s)	17, 355
TspDTI	ATGAA	4 cut(s)	188, 659, 796, 1019
TspGWI	ACGGA	2 cut(s)	37, 1059
TspRI	CASTG	3 cut(s)	29, 516, 724
VpaK11BI	GGWCC	1 cut(s)	947
XapI	RAATTY	1 cut(s)	883
XbaI	TCTAGA	1 cut(s)	1057
XmaJI	CCTAGG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	6 cut(s)	38, 93, 416, 578, 962, 1058
ZraI	GACGTC	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.