Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

22890573 .. 22893805

Gene Structure 3233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG202700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAGAAAAAGGAAGATAGCAGCAGCTGGGTGTATGGTGGTTCTCATCTTGTTCCTTGTGTTCAAGAATTAGCTAAAAATCCCATAACCACCATCCCACCGAGATACCTACAGCAAGATTACAATGATGATGATGCTCAAGACCAACTCAACAAGATCAATACCAATGAGATGCGCAGTTCTGTACAACCTGAAATACCATTCATTGACTTCAAGAAACTGCTCTCCCAGCAAGAATCAAACAATTTTGATGAACTATCTAGGCTCCACTTAGCCTGCAAAGAGTGGGGTTTCTTCCAGCTGGTAAACCATGGTGTGAGCTCTTCTTTGATGGAGAAAATGAAGACAGAAATTCAAGACTTCTTCAACCTCCCGATAGAGGAGAAGAAAAGGTTTTGGCAGCATCCAGGAGACGTGGAGGGTTTTGGACAGGCCTTTGTCGTTTCTGAAGAGCAAAAACTTGATTGGGCTGACATTTTCTTCCTCACCACCCTTCCTGTCCAGATGAGGAAGCCTCACTTATTCCCGGAGCTCCCCACTCCTTTCAAAGACACCTTGGAGATTTACTCAATGGAATTGGAAAACCTAGCCATGGCTATCCTAACCCAAATGGAAAATGCTTTAAAAATTGAAGCCAAGGAATTGACCAAGTCGTTTGTAGGTGGAATGCAATCCATGAGGATGAACTATTATCCTCCATGTCCACAGCCGGAGAAAGTCACCGGCCTTACTCCTCATTCGGACGCCGTAGGTCTAACCATGCTCCTGCAAGTCAATGAAATGGAAGGTCTCCAAGTCAAGAAGGATGGGATTTGGTTTCCTGTTAAGCCACTTCCAGATGCCTTCATTCTCAACGTTGGAGACATTTTAGAGATTCAAACAAATGGAACTTATCGTAGCATCGAGCATCGAGCAATTGTCAACTCTAAAAAAGAAAGACTGTCAATCGCGACATTTTACAGCCCGAGACTTGATGGTGAAATTTGTCCTGCACCTAGCTTGATCACTGAAGAAAGACATGCTGCATATACAAGCATCGGAGTGCAAGATTTCTTCACAGCCTTATTTGCACGTAAGCTTCAAGGAAAATCCTTTCTTGATGATCTTAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

371

Amino Acids

42.49

Weight (kDa)

5.13

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	66 - 177	1.1e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	224 - 322	2.6e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1114
Acc16I	TGCGCA	1 cut(s)	176
AccII	CGCG	1 cut(s)	950
AclI	AACGTT	1 cut(s)	855
AcsI	RAATTY	2 cut(s)	351, 981
AcuI	CTGAAG	2 cut(s)	468, 1029
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	2 cut(s)	379, 592
AgsI	TTSAA	8 cut(s)	65, 214, 356, 367, 547, 632, 878, 1082
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	7 cut(s)	27, 74, 301, 321, 532, 999, 1078
AluI	AGCT	7 cut(s)	27, 74, 301, 321, 532, 999, 1078
Alw21I	GWGCWC	2 cut(s)	323, 534
Alw26I	GTCTC	4 cut(s)	405, 794, 855, 961
AlwNI	CAGNNNCTG	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	964
AoxI	GGCC	2 cut(s)	432, 724
ApeKI	GCWGC	4 cut(s)	21, 24, 400, 1022
ApoI	RAATTY	2 cut(s)	351, 981
AspLEI	GCGC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	3 cut(s)	478, 712, 989
AvaI	CYCGRG	1 cut(s)	964
BanII	GRGCYC	2 cut(s)	323, 534
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	323, 534
BbvI	GCAGC	4 cut(s)	33, 36, 412, 1009
BccI	CCATC	4 cut(s)	101, 325, 800, 968
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	1 cut(s)	1002
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	4 cut(s)	405, 794, 855, 961
BfaI	CTAG	3 cut(s)	261, 587, 996
BfmI	CTRYAG	1 cut(s)	110
BisI	GCNGC	4 cut(s)	22, 25, 401, 1023
BlsI	GCNGC	4 cut(s)	23, 26, 402, 1024
Bme1390I	CCNGG	2 cut(s)	408, 527
BmeT110I	CYCGRG	1 cut(s)	964
BmgBI	CACGTC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	408, 527
BmsI	GCATC	7 cut(s)	124, 162, 412, 829, 909, 916, 1044
BpiI	GAAGAC	1 cut(s)	350
BplI	GAGNNNNNCTC	4 cut(s)	499, 531, 551, 583
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	1073
BsaHI	GRCGYC	1 cut(s)	744
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	4 cut(s)	310, 555, 591, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 592
Bse118I	RCCGGY	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	4 cut(s)	310, 555, 591, 636
BseGI	GGATG	4 cut(s)	93, 403, 687, 811
BseLI	CCNNNNNNNGG	2 cut(s)	379, 592
BseRI	GAGGAG	2 cut(s)	395, 723
BseXI	GCAGC	4 cut(s)	33, 36, 412, 1009
BseYI	CCCAGC	2 cut(s)	27, 228
BsgI	GTGCAG	1 cut(s)	975
Bsh1236I	CGCG	1 cut(s)	950
BshFI	GGCC	2 cut(s)	434, 726
BsiHKAI	GWGCWC	2 cut(s)	323, 534
BsiHKCI	CYCGRG	1 cut(s)	964
BsiSI	CCGG	3 cut(s)	527, 710, 723
BslI	CCNNNNNNNGG	2 cut(s)	379, 592
BsmAI	GTCTC	4 cut(s)	405, 794, 855, 961
BsmBI	CGTCTC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	2 cut(s)	434, 726
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	964
Bsp1286I	GDGCHC	2 cut(s)	323, 534
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	156, 1002, 1102
Bsp19I	CCATGG	2 cut(s)	310, 591
Bsp68I	TCGCGA	1 cut(s)	950
BspANI	GGCC	2 cut(s)	434, 726
BspFNI	CGCG	1 cut(s)	950
BspLI	GGNNCC	1 cut(s)	266
BspQI	GCTCTTC	2 cut(s)	328, 444
BspTNI	GGTCTC	1 cut(s)	794
BsrFI	RCCGGY	1 cut(s)	722
BsrGI	TGTACA	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	4 cut(s)	310, 555, 591, 636
BssMI	GATC	3 cut(s)	156, 1002, 1102
BssNI	GRCGYC	1 cut(s)	744
BssT1I	CCWWGG	4 cut(s)	310, 555, 591, 636
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	942
Bst6I	CTCTTC	2 cut(s)	328, 444
BstACI	GRCGYC	1 cut(s)	744
BstAUI	TGTACA	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	1073
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	271, 1106
BstDSI	CCRYGG	2 cut(s)	310, 591
BstF5I	GGATG	4 cut(s)	93, 403, 687, 811
BstFNI	CGCG	1 cut(s)	950
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	159, 1005, 1105
BstMAI	GTCTC	4 cut(s)	405, 794, 855, 961
BstMBI	GATC	3 cut(s)	156, 1002, 1102
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 1067
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	1022
BstSCI	CCNGG	2 cut(s)	406, 525
BstSFI	CTRYAG	1 cut(s)	110
BstUI	CGCG	1 cut(s)	950
BstV1I	GCAGC	4 cut(s)	33, 36, 412, 1009
BstV2I	GAAGAC	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	434, 726
BtgI	CCRYGG	2 cut(s)	310, 591
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	4 cut(s)	93, 403, 687, 811
BtsIMutI	CAGTG	1 cut(s)	1005
BtuMI	TCGCGA	1 cut(s)	950
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	722
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	6 cut(s)	311, 592, 676, 699, 760, 1019
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	2 cut(s)	271, 1106
DpnI	GATC	3 cut(s)	158, 1004, 1104
DpnII	GATC	3 cut(s)	156, 1002, 1102
DraI	TTTAAA	1 cut(s)	624
Eam1104I	CTCTTC	2 cut(s)	328, 444
EarI	CTCTTC	2 cut(s)	328, 444
Ecl136II	GAGCTC	2 cut(s)	321, 532
Eco130I	CCWWGG	4 cut(s)	310, 555, 591, 636
Eco147I	AGGCCT	1 cut(s)	434
Eco24I	GRGCYC	2 cut(s)	323, 534
Eco31I	GGTCTC	1 cut(s)	794
Eco53kI	GAGCTC	2 cut(s)	321, 532
Eco57I	CTGAAG	2 cut(s)	468, 1029
Eco88I	CYCGRG	1 cut(s)	964
EcoICRI	GAGCTC	2 cut(s)	321, 532
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	4 cut(s)	310, 555, 591, 636
EcoT38I	GRGCYC	2 cut(s)	323, 534
ErhI	CCWWGG	4 cut(s)	310, 555, 591, 636
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	6 cut(s)	314, 595, 679, 702, 763, 1022
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FatI	CATG	6 cut(s)	310, 591, 675, 698, 759, 1018
FbaI	TGATCA	1 cut(s)	1002
Fnu4HI	GCNGC	4 cut(s)	22, 25, 401, 1023
FokI	GGATG	4 cut(s)	80, 390, 694, 818
FriOI	GRGCYC	2 cut(s)	323, 534
Fsp4HI	GCNGC	4 cut(s)	22, 25, 401, 1023
FspBI	CTAG	3 cut(s)	261, 587, 996
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	4 cut(s)	22, 25, 401, 1023
GsaI	CCCAGC	2 cut(s)	31, 232
HaeIII	GGCC	2 cut(s)	434, 726
HapII	CCGG	3 cut(s)	527, 710, 723
HgaI	GACGC	1 cut(s)	752
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	6 cut(s)	314, 595, 679, 702, 763, 1022
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HindIII	AAGCTT	1 cut(s)	1076
HinfI	GANTC	2 cut(s)	236, 874
HpaII	CCGG	3 cut(s)	527, 710, 723
HphI	GGTGA	3 cut(s)	478, 712, 989
Hpy166II	GTNNAC	3 cut(s)	307, 704, 922
Hpy188I	TCNGA	3 cut(s)	448, 742, 1040
Hpy8I	GTNNAC	3 cut(s)	307, 704, 922
HpyAV	CCTTC	4 cut(s)	503, 779, 796, 853
HpyCH4III	ACNGT	1 cut(s)	942
HpyCH4IV	ACGT	3 cut(s)	414, 855, 1072
HpyCH4V	TGCA	7 cut(s)	279, 670, 769, 992, 1025, 1045, 1070
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 1067
HpyF3I	CTNAG	2 cut(s)	271, 1106
HpySE526I	ACGT	3 cut(s)	414, 855, 1072
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	6 cut(s)	314, 595, 679, 702, 763, 1022
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	1002
Kzo9I	GATC	3 cut(s)	156, 1002, 1102
LguI	GCTCTTC	2 cut(s)	328, 444
LmnI	GCTCC	4 cut(s)	270, 529, 537, 768
Lsp1109I	GCAGC	4 cut(s)	33, 36, 412, 1009
LweI	GCATC	7 cut(s)	124, 162, 412, 829, 909, 916, 1044
MaeI	CTAG	3 cut(s)	261, 587, 996
MaeII	ACGT	3 cut(s)	414, 855, 1072
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	3 cut(s)	158, 1004, 1104
MboI	GATC	3 cut(s)	156, 1002, 1102
MfeI	CAATTG	1 cut(s)	915
MhlI	GDGCHC	2 cut(s)	323, 534
MluCI	AATT	8 cut(s)	68, 244, 351, 575, 627, 641, 915, 981
MmeI	TCCRAC	1 cut(s)	838
MnlI	CCTC	9 cut(s)	373, 380, 412, 494, 501, 525, 672, 705, 744
MseI	TTAA	2 cut(s)	623, 825
MslI	CAYNNNNRTG	2 cut(s)	680, 1040
MspA1I	CMGCKG	2 cut(s)	27, 301
MspI	CCGG	3 cut(s)	527, 710, 723
MspR9I	CCNGG	2 cut(s)	408, 527
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	950
MwoI	GCNNNNNNNGC	2 cut(s)	229, 1067
NciI	CCSGG	1 cut(s)	527
NcoI	CCATGG	2 cut(s)	310, 591
NdeII	GATC	3 cut(s)	156, 1002, 1102
NlaIII	CATG	6 cut(s)	314, 595, 679, 702, 763, 1022
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	718
NruI	TCGCGA	1 cut(s)	950
NsbI	TGCGCA	1 cut(s)	176
NspI	RCATGY	1 cut(s)	1022
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	2 cut(s)	328, 444
PctI	GAATGC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	236, 874
PflFI	GACNNNGTC	1 cut(s)	649
PfoI	TCCNGGA	2 cut(s)	406, 525
PkrI	GCNGC	4 cut(s)	23, 26, 402, 1024
Ppu21I	YACGTR	1 cut(s)	1073
PsiI	TTATAA	1 cut(s)	1114
Psp124BI	GAGCTC	2 cut(s)	323, 534
Psp1406I	AACGTT	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	2 cut(s)	27, 228
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	649
PvuII	CAGCTG	2 cut(s)	27, 301
RruI	TCGCGA	1 cut(s)	950
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	2 cut(s)	680, 1040
SacI	GAGCTC	2 cut(s)	323, 534
SapI	GCTCTTC	2 cut(s)	328, 444
SaqAI	TTAA	2 cut(s)	623, 825
SatI	GCNGC	4 cut(s)	22, 25, 401, 1023
Sau3AI	GATC	3 cut(s)	156, 1002, 1102
ScrFI	CCNGG	2 cut(s)	408, 527
SduI	GDGCHC	2 cut(s)	323, 534
SfaNI	GCATC	7 cut(s)	124, 162, 412, 829, 909, 916, 1044
SfcI	CTRYAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	680, 1040
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	8 cut(s)	68, 244, 351, 575, 627, 641, 915, 981
SseBI	AGGCCT	1 cut(s)	434
SspMI	CTAG	3 cut(s)	261, 587, 996
SstI	GAGCTC	2 cut(s)	323, 534
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	406, 525
StyI	CCWWGG	4 cut(s)	310, 555, 591, 636
TaaI	ACNGT	1 cut(s)	942
TaiI	ACGT	3 cut(s)	417, 858, 1075
TaqI	TCGA	2 cut(s)	903, 910
TasI	AATT	8 cut(s)	68, 244, 351, 575, 627, 641, 915, 981
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	236, 874
Tru1I	TTAA	2 cut(s)	623, 825
Tru9I	TTAA	2 cut(s)	623, 825
TscAI	CASTG	1 cut(s)	1012
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	4 cut(s)	21, 24, 400, 1022
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	6 cut(s)	193, 267, 356, 698, 792, 835
TspRI	CASTG	1 cut(s)	1012
Tth111I	GACNNNGTC	1 cut(s)	649
XapI	RAATTY	2 cut(s)	351, 981
XceI	RCATGY	1 cut(s)	1022
XspI	CTAG	3 cut(s)	261, 587, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.