Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

9720482 .. 9722446

Gene Structure 1965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGTTCTTATATATACGCAAGCGGTGGGATTAATCATCAATAAGAACTTGTTCTCTGAGTTTGGAGCAAAGGAAGAATTACCAAAGCTAGGGAGCTCTCTTCCGGTGCCTTGTGTTCAGGAGCTTGCGAAAGAGCCATTAACTACAGTCCCACACCGATATGTTCGCCCTGATCAAGATCCTCCCTTCATTTCTGGTATGGCCACTTCTTTACCTCAAGTACCAGTGATCGACATGAACAAGTTACTTTCAGAAGAAACCATGCCAGCGGAGTTGCAGGAGTTCCACCTTGCTCGCAGAGAATGGGGTTTCTTCCAGCTGATAAATCATGGAGTTGGTGAAACTTTGTTGGAGAGTGTGAAGTCAGGGATTCAAGAACTCTTCAGTCTCCCAATGGAAGAGAAGACACGGTTTTGGCAGCAGCCAGAAATTATGGAGGGTTTTGGACAAGCATTTGTTGTGTCTGCGAGCCAGAAACTTGATTGGTCAGACATATTCTACTTGATCACACTCCCAAAACATTTGAGGAAGCCACATTTATTCCCCAATATTCCTCAACCACTAAGAGATAACTTGGAAGTGTACTCTGCGGAACTAGAAGAGCTTGCCAAGAAGATTCTTGACCTCATGACAAAAGCACTGGGAGTGGATGCTAACTATATAAAAGAGTTGTTTGACCAAGGGACTCAAATGTTTAGAATGAACTATTATCCACCATGTAAGCAACCAGAGCTTGTCATTGGCCTTAACCCTCACTCAGATGCTGTTGGATTGACCATCCTCCTCCAAGTGAATGAAATGGAAGGCCTTCAGGTTAGAAAAGATGGTATGTGGATTCCGATTATACCCCTAAACAATGCTTTCGTCGTCAACGTTGGAGATATTTTGGAGATTGTGACGAATGGAATATACCGTAGCATTGAGCATCGGGCAACAGTGAACCAGGAGAAGGAAAAGCTGTCAATAGCCACATTTTACAGTCCAAAATTGGAGGGAGATATGGGCCCTGCTCCGAACCTCATTACTCCAGAGAGACCAGCATTGTTCAAGAGAATAGGTGTTGCAGACTACTTCAGGGGATTTTTTGAACGCAAACTCGATGGGAAATCATACATAGATGTCATGAGGATTCAACATGGTGAGGAAGGCATGGGCACCCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

389

Amino Acids

44.04

Weight (kDa)

5.22

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	74 - 182	3.8e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	229 - 328	5e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	106, 1154
AciI	CCGC	3 cut(s)	23, 269, 590
AclI	AACGTT	1 cut(s)	873
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	3 cut(s)	367, 794, 1057
AfaI	GTAC	2 cut(s)	222, 584
AfiI	CCNNNNNNNGG	2 cut(s)	89, 949
AgsI	TTSAA	4 cut(s)	374, 1048, 1088, 1133
AjnI	CCWGG	1 cut(s)	942
AluBI	AGCT	7 cut(s)	88, 96, 124, 319, 604, 733, 958
AluI	AGCT	7 cut(s)	88, 96, 124, 319, 604, 733, 958
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	2 cut(s)	392, 1027
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	4 cut(s)	201, 742, 805, 1003
ApaI	GGGCCC	1 cut(s)	1007
ApeKI	GCWGC	2 cut(s)	418, 421
AseI	ATTAAT	1 cut(s)	32
Asp700I	GAANNNNTTC	2 cut(s)	50, 807
AspS9I	GGNCC	2 cut(s)	1003, 1004
AsuHPI	GGTGA	2 cut(s)	350, 1151
BaeGI	GKGCMC	2 cut(s)	1007, 1157
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	2 cut(s)	106, 1154
BanII	GRGCYC	2 cut(s)	98, 1007
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	430, 433
BccI	CCATC	3 cut(s)	785, 818, 1094
BciT130I	CCWGG	1 cut(s)	944
BclI	TGATCA	2 cut(s)	172, 504
BcoDI	GTCTC	2 cut(s)	392, 1027
BfaI	CTAG	3 cut(s)	89, 596, 1165
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	2 cut(s)	419, 422
BlsI	GCNGC	2 cut(s)	420, 423
Bme1390I	CCNGG	1 cut(s)	944
BmgT120I	GGNCC	2 cut(s)	1003, 1004
BmiI	GGNNCC	3 cut(s)	108, 1005, 1156
BmrFI	CCNGG	1 cut(s)	944
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	3 cut(s)	640, 751, 934
BmuI	ACTGGG	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	1011
BpuEI	CTTGAG	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	1027
BsaJI	CCNNGG	1 cut(s)	679
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 949
Bse1I	ACTGG	2 cut(s)	224, 645
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	944
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	2 cut(s)	655, 777
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	89, 949
BseMII	CTCAG	2 cut(s)	48, 771
BseNI	ACTGG	2 cut(s)	224, 645
BseRI	GAGGAG	1 cut(s)	773
BseSI	GKGCMC	2 cut(s)	1007, 1157
BseXI	GCAGC	2 cut(s)	430, 433
BshFI	GGCC	4 cut(s)	203, 744, 807, 1005
BshNI	GGYRCC	2 cut(s)	106, 1154
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	134, 697
BslI	CCNNNNNNNGG	2 cut(s)	89, 949
BsmAI	GTCTC	2 cut(s)	392, 1027
BsmFI	GGGAC	2 cut(s)	134, 697
BsnI	GGCC	4 cut(s)	203, 744, 807, 1005
Bso31I	GGTCTC	1 cut(s)	1027
Bsp120I	GGGCCC	1 cut(s)	1003
Bsp1286I	GDGCHC	3 cut(s)	98, 1007, 1157
Bsp143I	GATC	4 cut(s)	172, 178, 228, 504
BspACI	CCGC	3 cut(s)	23, 269, 590
BspANI	GGCC	4 cut(s)	203, 744, 807, 1005
BspCNI	CTCAG	2 cut(s)	49, 770
BspHI	TCATGA	2 cut(s)	627, 1122
BspLI	GGNNCC	3 cut(s)	108, 1005, 1156
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	594
BspT107I	GGYRCC	2 cut(s)	106, 1154
BspTNI	GGTCTC	1 cut(s)	1027
BsrI	ACTGG	2 cut(s)	224, 645
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	4 cut(s)	172, 178, 228, 504
BssT1I	CCWWGG	1 cut(s)	679
Bst2UI	CCWGG	1 cut(s)	944
Bst4CI	ACNGT	5 cut(s)	148, 411, 914, 937, 980
Bst6I	CTCTTC	4 cut(s)	105, 386, 393, 594
BstC8I	GCNNGC	6 cut(s)	21, 126, 267, 295, 469, 606
BstDEI	CTNAG	3 cut(s)	57, 563, 757
BstF5I	GGATG	2 cut(s)	655, 777
BstKTI	GATC	4 cut(s)	175, 181, 231, 507
BstMAI	GTCTC	2 cut(s)	392, 1027
BstMBI	GATC	4 cut(s)	172, 178, 228, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstNI	CCWGG	1 cut(s)	944
BstSCI	CCNGG	1 cut(s)	942
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	2 cut(s)	1007, 1157
BstV1I	GCAGC	2 cut(s)	430, 433
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	4 cut(s)	203, 744, 807, 1005
BtsCI	GGATG	2 cut(s)	655, 777
BtsIMutI	CAGTG	3 cut(s)	231, 638, 942
Cac8I	GCNNGC	6 cut(s)	21, 126, 267, 295, 469, 606
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	2 cut(s)	627, 1122
Cfr13I	GGNCC	2 cut(s)	1003, 1004
Csp6I	GTAC	2 cut(s)	221, 583
CviAII	CATG	8 cut(s)	235, 262, 329, 628, 717, 1123, 1136, 1150
CviQI	GTAC	2 cut(s)	221, 583
DdeI	CTNAG	3 cut(s)	57, 563, 757
DpnI	GATC	4 cut(s)	174, 180, 230, 506
DpnII	GATC	4 cut(s)	172, 178, 228, 504
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	4 cut(s)	105, 386, 393, 594
EarI	CTCTTC	4 cut(s)	105, 386, 393, 594
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	807
Eco24I	GRGCYC	2 cut(s)	98, 1007
Eco31I	GGTCTC	1 cut(s)	1027
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	3 cut(s)	367, 794, 1057
EcoICRI	GAGCTC	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	1004
EcoRII	CCWGG	1 cut(s)	942
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	98, 1007
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	8 cut(s)	238, 265, 332, 631, 720, 1126, 1139, 1153
FaqI	GGGAC	2 cut(s)	134, 697
FatI	CATG	8 cut(s)	234, 261, 328, 627, 716, 1122, 1135, 1149
FbaI	TGATCA	2 cut(s)	172, 504
Fnu4HI	GCNGC	2 cut(s)	419, 422
FokI	GGATG	2 cut(s)	662, 764
FriOI	GRGCYC	2 cut(s)	98, 1007
Fsp4HI	GCNGC	2 cut(s)	419, 422
FspBI	CTAG	3 cut(s)	89, 596, 1165
GluI	GCNGC	2 cut(s)	419, 422
GsuI	CTGGAG	1 cut(s)	1011
HaeIII	GGCC	4 cut(s)	203, 744, 807, 1005
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	8 cut(s)	238, 265, 332, 631, 720, 1126, 1139, 1153
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HinfI	GANTC	5 cut(s)	370, 616, 685, 835, 1129
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	350, 1151
Hpy166II	GTNNAC	3 cut(s)	583, 871, 940
Hpy188I	TCNGA	6 cut(s)	58, 253, 490, 760, 840, 1014
Hpy188III	TCNNGA	8 cut(s)	119, 176, 374, 620, 628, 1028, 1048, 1123
Hpy8I	GTNNAC	3 cut(s)	583, 871, 940
Hpy99I	CGWCG	1 cut(s)	869
HpyAV	CCTTC	5 cut(s)	196, 797, 818, 943, 1139
HpyCH4III	ACNGT	5 cut(s)	148, 411, 914, 937, 980
HpyCH4IV	ACGT	1 cut(s)	873
HpyCH4V	TGCA	2 cut(s)	277, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	3 cut(s)	57, 563, 757
HpySE526I	ACGT	1 cut(s)	873
Hsp92II	CATG	8 cut(s)	238, 265, 332, 631, 720, 1126, 1139, 1153
Ksp22I	TGATCA	2 cut(s)	172, 504
Kzo9I	GATC	4 cut(s)	172, 178, 228, 504
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	4 cut(s)	65, 93, 121, 1015
Lsp1109I	GCAGC	2 cut(s)	430, 433
LweI	GCATC	3 cut(s)	640, 751, 934
MaeI	CTAG	3 cut(s)	89, 596, 1165
MaeII	ACGT	1 cut(s)	873
MaeIII	GTNAC	2 cut(s)	243, 895
MalI	GATC	4 cut(s)	174, 180, 230, 506
MboI	GATC	4 cut(s)	172, 178, 228, 504
MboII	GAAGA	9 cut(s)	86, 92, 266, 304, 373, 410, 415, 611, 625
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	3 cut(s)	98, 1007, 1157
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	3 cut(s)	77, 429, 986
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	3 cut(s)	330, 748, 856
Mox20I	TGGCCA	1 cut(s)	203
MroXI	GAANNNNTTC	2 cut(s)	50, 807
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	3 cut(s)	32, 140, 747
MslI	CAYNNNNRTG	2 cut(s)	159, 759
Msp20I	TGGCCA	1 cut(s)	203
MspA1I	CMGCKG	2 cut(s)	269, 319
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	944
MvaI	CCWGG	1 cut(s)	944
MwoI	GCNNNNNNNGC	1 cut(s)	730
NdeII	GATC	4 cut(s)	172, 178, 228, 504
NlaIII	CATG	8 cut(s)	238, 265, 332, 631, 720, 1126, 1139, 1153
NlaIV	GGNNCC	3 cut(s)	108, 1005, 1156
NmuCI	GTSAC	1 cut(s)	895
PagI	TCATGA	2 cut(s)	627, 1122
PceI	AGGCCT	1 cut(s)	807
PciSI	GCTCTTC	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	870
PdmI	GAANNNNTTC	2 cut(s)	50, 807
PfeI	GAWTC	4 cut(s)	370, 616, 835, 1129
PkrI	GCNGC	2 cut(s)	420, 423
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
PshBI	ATTAAT	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	98
Psp1406I	AACGTT	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	942
PspGI	CCWGG	1 cut(s)	942
PspN4I	GGNNCC	3 cut(s)	108, 1005, 1156
PspOMI	GGGCCC	1 cut(s)	1003
PspPI	GGNCC	2 cut(s)	1003, 1004
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	222, 584
RsaNI	GTAC	2 cut(s)	221, 583
RseI	CAYNNNNRTG	2 cut(s)	159, 759
SacI	GAGCTC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	3 cut(s)	32, 140, 747
SatI	GCNGC	2 cut(s)	419, 422
Sau3AI	GATC	4 cut(s)	172, 178, 228, 504
Sau96I	GGNCC	2 cut(s)	1003, 1004
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	1 cut(s)	944
SduI	GDGCHC	3 cut(s)	98, 1007, 1157
SfaNI	GCATC	3 cut(s)	640, 751, 934
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	159, 759
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	77, 429, 986
SseBI	AGGCCT	1 cut(s)	807
SsiI	CCGC	3 cut(s)	23, 269, 590
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	3 cut(s)	89, 596, 1165
SstI	GAGCTC	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	807
StyD4I	CCNGG	1 cut(s)	942
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	5 cut(s)	148, 411, 914, 937, 980
TaiI	ACGT	1 cut(s)	876
TaqI	TCGA	2 cut(s)	231, 1098
TasI	AATT	3 cut(s)	77, 429, 986
TatI	WGTACW	1 cut(s)	582
TfiI	GAWTC	4 cut(s)	370, 616, 835, 1129
Tru1I	TTAA	3 cut(s)	32, 140, 747
Tru9I	TTAA	3 cut(s)	32, 140, 747
TscAI	CASTG	3 cut(s)	231, 645, 942
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	2 cut(s)	418, 421
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	4 cut(s)	178, 251, 716, 810
TspRI	CASTG	3 cut(s)	231, 645, 942
VspI	ATTAAT	1 cut(s)	32
XmnI	GAANNNNTTC	2 cut(s)	50, 807
XspI	CTAG	3 cut(s)	89, 596, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.