Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

27075888 .. 27079189

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCAGAAATTGCTTTCCCAAGAATCAACCAGTTCCGAATCTGAACTAGCCAGGCTCCATTTTGCTTGCAAAGAATGGGGTTTCTTCCAGTTGGTGAACCATGGTGTGAGCTCTTCCTTGGTGGGGAAAATAAAGACAGAAATTCAAGACTTCTTCAACCTACCCACAGAAGAGAAGAAAAGGTTTTGGCAACAGCCAGGAGACGTGGAAGGTTTTGGACAAGCCTTTGTAATTTCTGAAGACCAAAAACTCGACTGGGCTGACATGTTCTTCTTGAACACTCTTCCTGTCCAATTGAGGAGGCCTCACCTATTCCCAAAGCTCCCTTCTCCTTTCAGAGAGACTTTCGAAACTTACTCATTGGAACTGAAAAACCTAGCCATGACTATACTATCACACATGGAAAAAGCTTTGCAGACGGAAGCCAAGGAAGTGACCAACTTATTCGAAGATGGATTGCAAGCGGTGAGGATGAACTATTACCCTCCGTGTCCTCAGCCGGAGACAGTCATCGGTCTGACCCCTCACTCTGATGCTGTAGGCCTCACCGTCCTCCTACAAATCAACGAAATGGATGGCCTCCAAGTAAAGAAAGATGGGATTTGGGTTCCCGTGAAACCACTACCTGATGCCTTTATTGTGAATATTGGAGACATTCTAGAGATTATAACAAATGGGACGTATCGTAGCATTGAGCATCATGCAACTGTGAACCCTGAAAAAGAAAGGCTCTCAGTCGCCACATTTTACTCCCCCAGATTTGGTGCTGAGATTGGCCCGGCCTCCAGCTTGATCACTAAGCAAACACCTGCAGCATACACAAGGGTGGCAGTTGAAGAATATTTCAAAGCATTATTTGAACGTAAGCTTAATGGAAAGTCTTTTCTTGACGAAATGAAGATTAAGTATAATGTTAATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

34.93

Weight (kDa)

5.6

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	8 - 106	1.6e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	154 - 252	6.7e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
AarI	CACCTGC	1 cut(s)	817
Acc36I	ACCTGC	1 cut(s)	817
AciI	CCGC	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	123, 761
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	6 cut(s)	146, 157, 277, 836, 847, 860
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	50, 196
AjuI	GAANNNNNNNTTGG	2 cut(s)	310, 342
AleI	CACNNNNGTG	1 cut(s)	824
AluBI	AGCT	5 cut(s)	111, 322, 410, 789, 868
AluI	AGCT	5 cut(s)	111, 322, 410, 789, 868
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	4 cut(s)	195, 335, 497, 645
AoxI	GGCC	5 cut(s)	302, 541, 577, 775, 780
ApeKI	GCWGC	1 cut(s)	812
ApoI	RAATTY	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	776
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	4 cut(s)	106, 299, 478, 538
AsuII	TTCGAA	2 cut(s)	348, 447
BanII	GRGCYC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	113
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	824
BccI	CCATC	3 cut(s)	446, 569, 590
BciT130I	CCWGG	2 cut(s)	52, 198
BclI	TGATCA	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	4 cut(s)	195, 335, 497, 645
BfaI	CTAG	3 cut(s)	47, 377, 659
BfmI	CTRYAG	2 cut(s)	537, 810
BfuAI	ACCTGC	1 cut(s)	817
BisI	GCNGC	1 cut(s)	813
BlsI	GCNGC	1 cut(s)	814
Bme1390I	CCNGG	3 cut(s)	52, 198, 779
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	2 cut(s)	56, 609
BmrFI	CCNGG	3 cut(s)	52, 198, 779
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	3 cut(s)	523, 619, 706
BmuI	ACTGGG	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	246
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpmI	CTGGAG	1 cut(s)	769
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu14I	TTCGAA	2 cut(s)	348, 447
BpuMI	CCSGG	1 cut(s)	779
BsaJI	CCNNGG	3 cut(s)	100, 117, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 761
Bse1I	ACTGG	3 cut(s)	30, 88, 260
BseBI	CCWGG	2 cut(s)	52, 198
BseDI	CCNNGG	3 cut(s)	100, 117, 426
BseGI	GGATG	2 cut(s)	477, 580
BseLI	CCNNNNNNNGG	2 cut(s)	123, 761
BseMII	CTCAG	3 cut(s)	509, 747, 759
BseNI	ACTGG	3 cut(s)	30, 88, 260
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	824
BshFI	GGCC	5 cut(s)	304, 543, 579, 777, 782
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	500, 779
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	2 cut(s)	123, 761
BsmAI	GTCTC	4 cut(s)	195, 335, 497, 645
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	691
BsnI	GGCC	5 cut(s)	304, 543, 579, 777, 782
Bsp119I	TTCGAA	2 cut(s)	348, 447
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	792
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	5 cut(s)	304, 543, 579, 777, 782
BspCNI	CTCAG	3 cut(s)	508, 746, 760
BspLI	GGNNCC	2 cut(s)	56, 609
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	817
BspQI	GCTCTTC	1 cut(s)	118
BspT104I	TTCGAA	2 cut(s)	348, 447
BsrI	ACTGG	3 cut(s)	30, 88, 260
BssECI	CCNNGG	3 cut(s)	100, 117, 426
BssMI	GATC	1 cut(s)	792
BssT1I	CCWWGG	3 cut(s)	100, 117, 426
Bst2UI	CCWGG	2 cut(s)	52, 198
Bst4CI	ACNGT	3 cut(s)	508, 550, 709
Bst6I	CTCTTC	3 cut(s)	118, 165, 288
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBI	TTCGAA	2 cut(s)	348, 447
BstC8I	GCNNGC	2 cut(s)	67, 462
BstDEI	CTNAG	4 cut(s)	495, 733, 768, 798
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	477, 580
BstKTI	GATC	1 cut(s)	795
BstMAI	GTCTC	4 cut(s)	195, 335, 497, 645
BstMBI	GATC	1 cut(s)	792
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	52, 198
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	50, 196, 777
BstSFI	CTRYAG	2 cut(s)	537, 810
BstV1I	GCAGC	1 cut(s)	824
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	5 cut(s)	304, 543, 579, 777, 782
BtgI	CCRYGG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	477, 580
BveI	ACCTGC	1 cut(s)	817
Cac8I	GCNNGC	2 cut(s)	67, 462
Cfr13I	GGNCC	1 cut(s)	776
CviAII	CATG	5 cut(s)	101, 265, 382, 400, 701
DdeI	CTNAG	4 cut(s)	495, 733, 768, 798
DpnI	GATC	1 cut(s)	794
DpnII	GATC	1 cut(s)	792
Eam1104I	CTCTTC	3 cut(s)	118, 165, 288
EarI	CTCTTC	3 cut(s)	118, 165, 288
Ecl136II	GAGCTC	1 cut(s)	111
Eco130I	CCWWGG	3 cut(s)	100, 117, 426
Eco147I	AGGCCT	2 cut(s)	304, 543
Eco24I	GRGCYC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	50, 196
EcoT14I	CCWWGG	3 cut(s)	100, 117, 426
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	3 cut(s)	100, 117, 426
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	5 cut(s)	104, 268, 385, 403, 704
FaiI	YATR	9 cut(s)	102, 266, 383, 389, 401, 668, 702, 817, 909
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	5 cut(s)	100, 264, 381, 399, 700
FbaI	TGATCA	1 cut(s)	792
Fnu4HI	GCNGC	1 cut(s)	813
FokI	GGATG	2 cut(s)	484, 587
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	813
FspBI	CTAG	3 cut(s)	47, 377, 659
GluI	GCNGC	1 cut(s)	813
GsuI	CTGGAG	1 cut(s)	769
HaeIII	GGCC	5 cut(s)	304, 543, 579, 777, 782
HapII	CCGG	2 cut(s)	500, 779
Hin1II	CATG	5 cut(s)	104, 268, 385, 403, 704
HindIII	AAGCTT	2 cut(s)	408, 866
HinfI	GANTC	2 cut(s)	23, 38
HpaII	CCGG	2 cut(s)	500, 779
HphI	GGTGA	4 cut(s)	106, 299, 478, 538
Hpy166II	GTNNAC	2 cut(s)	97, 712
Hpy188I	TCNGA	6 cut(s)	37, 43, 238, 338, 519, 532
Hpy188III	TCNNGA	4 cut(s)	146, 274, 659, 887
Hpy8I	GTNNAC	2 cut(s)	97, 712
HpyAV	CCTTC	2 cut(s)	203, 336
HpyCH4III	ACNGT	3 cut(s)	508, 550, 709
HpyCH4IV	ACGT	3 cut(s)	204, 680, 862
HpyCH4V	TGCA	6 cut(s)	4, 69, 415, 460, 704, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	4 cut(s)	495, 733, 768, 798
HpySE526I	ACGT	3 cut(s)	204, 680, 862
Hsp92II	CATG	5 cut(s)	104, 268, 385, 403, 704
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	1 cut(s)	792
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	60, 327
Lsp1109I	GCAGC	1 cut(s)	824
LweI	GCATC	3 cut(s)	523, 619, 706
MaeI	CTAG	3 cut(s)	47, 377, 659
MaeII	ACGT	3 cut(s)	204, 680, 862
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	1 cut(s)	794
MboI	GATC	1 cut(s)	792
MfeI	CAATTG	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	4 cut(s)	8, 141, 231, 293
MseI	TTAA	3 cut(s)	870, 903, 915
MslI	CAYNNNNRTG	2 cut(s)	531, 824
MspI	CCGG	2 cut(s)	500, 779
MspR9I	CCNGG	3 cut(s)	52, 198, 779
MunI	CAATTG	1 cut(s)	293
MvaI	CCWGG	2 cut(s)	52, 198
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	792
NlaIII	CATG	5 cut(s)	104, 268, 385, 403, 704
NlaIV	GGNNCC	2 cut(s)	56, 609
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	2 cut(s)	348, 447
OliI	CACNNNNGTG	1 cut(s)	824
PaqCI	CACCTGC	1 cut(s)	817
PceI	AGGCCT	2 cut(s)	304, 543
PciI	ACATGT	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	23, 38
PkrI	GCNGC	1 cut(s)	814
PscI	ACATGT	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	50, 196
PspGI	CCWGG	2 cut(s)	50, 196
PspN4I	GGNNCC	2 cut(s)	56, 609
PspPI	GGNCC	1 cut(s)	776
PstI	CTGCAG	1 cut(s)	814
RseI	CAYNNNNRTG	2 cut(s)	531, 824
SacI	GAGCTC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	870, 903, 915
SatI	GCNGC	1 cut(s)	813
Sau3AI	GATC	1 cut(s)	792
Sau96I	GGNCC	1 cut(s)	776
ScrFI	CCNGG	3 cut(s)	52, 198, 779
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	3 cut(s)	523, 619, 706
SfcI	CTRYAG	2 cut(s)	537, 810
SfuI	TTCGAA	2 cut(s)	348, 447
SmiMI	CAYNNNNRTG	2 cut(s)	531, 824
Sse9I	AATT	4 cut(s)	8, 141, 231, 293
SseBI	AGGCCT	2 cut(s)	304, 543
SsiI	CCGC	1 cut(s)	464
SspI	AATATT	2 cut(s)	646, 842
SspMI	CTAG	3 cut(s)	47, 377, 659
SstI	GAGCTC	1 cut(s)	113
StuI	AGGCCT	2 cut(s)	304, 543
StyD4I	CCNGG	3 cut(s)	50, 196, 777
StyI	CCWWGG	3 cut(s)	100, 117, 426
TaaI	ACNGT	3 cut(s)	508, 550, 709
TaiI	ACGT	3 cut(s)	207, 683, 865
TaqI	TCGA	3 cut(s)	252, 348, 447
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	4 cut(s)	8, 141, 231, 293
TfiI	GAWTC	2 cut(s)	23, 38
Tru1I	TTAA	3 cut(s)	870, 903, 915
Tru9I	TTAA	3 cut(s)	870, 903, 915
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	812
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	488, 911
TspGWI	ACGGA	2 cut(s)	434, 477
XapI	RAATTY	1 cut(s)	141
XbaI	TCTAGA	1 cut(s)	658
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	3 cut(s)	47, 377, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.