Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

22813486 .. 22816045

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG206400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAAGAGAAAAGCGCCGGCAGAGCTGGAATCAGACACCTTGGAGATTTACTCAATGGAATTGGAAAACCTAGCCATGGCTATCCAACCCAAATGGAAAATGCTTTAAAAATTGAAGCCAAGGAATTGACCAAGTCGTTTGTAGGTGGAATGCAATCCATGAGGATGAACTATTATCCTCCATGTCCACAACCGGAGAAAGTCACCGACCTTACTCCTCATTCGGACGCCGTAGGTTTAACCATCCTCCTGCAAGTCAATGAATTATTGGAAGTTCTCCAAGTCAAGAAGGATGGGATTTGGTTTCCTGTTAAGCCACTTCCAGATGCCTTCATTGTCAACGTTGGAGACATTTTAGAGATTCAAACAAATGGAACTTATCGTAGCATTGAGCATCGAGCAATTGTCAACTCTAAAAAAGAAAGACTGTCAATCGCGACATTTTACAGCCCGAGACTTGATGGCGAAATTTGTCCAGCACCTAGCTTGATCACTGAAGAAACACATGCTGCATATACAAGCATCGGAGTGCAAGATTTCTTCACAGCCTTATTTGTACGTAAGCTTCAAGGAAAATCCTTTCTTGATGATCTTAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

200

Amino Acids

22.26

Weight (kDa)

6.21

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	52 - 151	2.7e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	601
AccII	CGCG	1 cut(s)	437
AclI	AACGTT	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	116, 365, 569
AluBI	AGCT	3 cut(s)	26, 486, 565
AluI	AGCT	3 cut(s)	26, 486, 565
Alw26I	GTCTC	2 cut(s)	342, 448
Ama87I	CYCGRG	1 cut(s)	451
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	451
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	3 cut(s)	251, 287, 455
BceAI	ACGGC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	342, 448
BfaI	CTAG	2 cut(s)	72, 483
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
BmeT110I	CYCGRG	1 cut(s)	451
BmsI	GCATC	3 cut(s)	316, 403, 531
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BsaAI	YACGTR	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	40, 76, 120
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	17
BseDI	CCNNGG	3 cut(s)	40, 76, 120
BseGI	GGATG	3 cut(s)	171, 243, 298
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	496
Bsh1236I	CGCG	1 cut(s)	437
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	18, 194
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	342, 448
BsmI	GAATGC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	489, 589
Bsp19I	CCATGG	1 cut(s)	76
Bsp68I	TCGCGA	1 cut(s)	437
BspFNI	CGCG	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	40, 76, 120
BssMI	GATC	2 cut(s)	489, 589
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	3 cut(s)	40, 76, 120
Bst4CI	ACNGT	1 cut(s)	429
BstACI	GRCGYC	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	593
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	3 cut(s)	171, 243, 298
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	492, 592
BstMAI	GTCTC	2 cut(s)	342, 448
BstMBI	GATC	2 cut(s)	489, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	509
BstSNI	TACGTA	1 cut(s)	560
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	496
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	171, 243, 298
BtsIMutI	CAGTG	1 cut(s)	492
BtuMI	TCGCGA	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	17
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	4 cut(s)	77, 160, 183, 506
CviJI	RGCY	9 cut(s)	26, 75, 81, 119, 316, 450, 486, 548, 565
CviKI_1	RGCY	9 cut(s)	26, 75, 81, 119, 316, 450, 486, 548, 565
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	1 cut(s)	593
DpnI	GATC	2 cut(s)	491, 591
DpnII	GATC	2 cut(s)	489, 589
DraI	TTTAAA	1 cut(s)	108
Eco105I	TACGTA	1 cut(s)	560
Eco130I	CCWWGG	3 cut(s)	40, 76, 120
Eco57I	CTGAAG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	451
EcoT14I	CCWWGG	3 cut(s)	40, 76, 120
ErhI	CCWWGG	3 cut(s)	40, 76, 120
FaeI	CATG	4 cut(s)	80, 163, 186, 509
FaiI	YATR	7 cut(s)	78, 161, 184, 507, 514, 516, 601
FatI	CATG	4 cut(s)	76, 159, 182, 505
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	3 cut(s)	178, 230, 305
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	72, 483
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	18
HapII	CCGG	2 cut(s)	18, 194
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	80, 163, 186, 509
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	2 cut(s)	340, 409
HindII	GTYRAC	2 cut(s)	340, 409
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	30, 361
HpaII	CCGG	2 cut(s)	18, 194
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	188, 340, 409
Hpy188I	TCNGA	3 cut(s)	35, 226, 527
Hpy188III	TCNNGA	4 cut(s)	286, 323, 436, 584
Hpy8I	GTNNAC	3 cut(s)	188, 340, 409
HpyAV	CCTTC	2 cut(s)	283, 340
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	2 cut(s)	342, 559
HpyCH4V	TGCA	4 cut(s)	154, 253, 512, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	593
HpySE526I	ACGT	2 cut(s)	342, 559
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	80, 163, 186, 509
HspAI	GCGC	1 cut(s)	15
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	489, 589
LpnPI	CCDG	7 cut(s)	12, 31, 207, 263, 321, 336, 489
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	3 cut(s)	316, 403, 531
MaeI	CTAG	2 cut(s)	72, 483
MaeII	ACGT	2 cut(s)	342, 559
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	491, 591
MboI	GATC	2 cut(s)	489, 589
MboII	GAAGA	3 cut(s)	17, 509, 532
MfeI	CAATTG	1 cut(s)	402
MluCI	AATT	6 cut(s)	60, 111, 125, 263, 402, 468
MmeI	TCCRAC	2 cut(s)	110, 325
MnlI	CCTC	4 cut(s)	156, 189, 228, 257
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	3 cut(s)	107, 239, 312
MslI	CAYNNNNRTG	2 cut(s)	164, 527
MspI	CCGG	2 cut(s)	18, 194
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	156
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	23
NaeI	GCCGGC	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	489, 589
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	4 cut(s)	80, 163, 186, 509
NmuCI	GTSAC	1 cut(s)	202
NruI	TCGCGA	1 cut(s)	437
NspI	RCATGY	1 cut(s)	509
PctI	GAATGC	1 cut(s)	156
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	30, 361
PflFI	GACNNNGTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	511
Ppu21I	YACGTR	1 cut(s)	560
PsiI	TTATAA	1 cut(s)	601
Psp1406I	AACGTT	1 cut(s)	342
PsyI	GACNNNGTC	1 cut(s)	133
RruI	TCGCGA	1 cut(s)	437
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	2 cut(s)	164, 527
SaqAI	TTAA	3 cut(s)	107, 239, 312
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	2 cut(s)	489, 589
SfaNI	GCATC	3 cut(s)	316, 403, 531
SmiMI	CAYNNNNRTG	2 cut(s)	164, 527
SnaBI	TACGTA	1 cut(s)	560
Sse9I	AATT	6 cut(s)	60, 111, 125, 263, 402, 468
SspMI	CTAG	2 cut(s)	72, 483
StyI	CCWWGG	3 cut(s)	40, 76, 120
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	2 cut(s)	345, 562
TaqI	TCGA	1 cut(s)	397
TasI	AATT	6 cut(s)	60, 111, 125, 263, 402, 468
TfiI	GAWTC	2 cut(s)	30, 361
Tru1I	TTAA	3 cut(s)	107, 239, 312
Tru9I	TTAA	3 cut(s)	107, 239, 312
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	182, 276, 322
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	1 cut(s)	509
XspI	CTAG	2 cut(s)	72, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.