Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000963

Physical Location & Seq

Genomic Coordinates Reverse (-)

38917316 .. 38927797

Gene Structure 10482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1272500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAAGAAAAGGCATCTGCCGGGAAGAGCATGTACGGTAGTTCTCTTCTTGTGCCTAGTGTTCAAGAATTAGTAAAAAAGCCAGTAACCACAATCCCACCAAGATACATACAGCATCATCATCAAGATGGTAACCAAGAGCATGAGATGACCATCAATTCTGATTATCATGCTCATCAAATACCATCCATTGACGTGCAGAAATTGCTTTCCCAAGAATCAACCATTTCTGATTCTGAACTAGCCAGGCTCCATTTTGCTTGCAAAGAATGGGGTTTCTTCCAGTTGGTAAACCATGGTGTGAGCTCTTCCTTGGTGGGGAAAATAAGGACAGAAATTCAAGACTTCTTCAACCTACCCACGGAAGAGAAGAAAAAGTTTTGGCAACAGCCAGGAGACGTGGAAGGTTTTGGACAAGCCTTTGTAGTTTCTGAAGACCAAAAACTCGACTGGGCTGACATTTTCTTCTTGAACACCCTTCCTGTCCAATTGAGGAGGCCTCACCTATTCCCAAAGCTCCCTTCTCCTTTCAGAGAGACTTTAGAAACTTACTCATTGGAACTGAAAAACCTAGCCATGACTATAATATCACACATGGAAAAAGCTTTGCAGACGGAAGCCAAGGAAGTGACCAACTTATTCGAAGATGGATTGCAAGCGATGAGGATGAACTATTACCCTCCGTGTCCTCAGCCGGAGACAGTCATCGGTCTGACCCCTCACTCTGATGCTATAGGCCTCACCGTCCTCCTACAAATCAACGAAATGGATGGCCTCCAAGTAAAGAAGGATGGGATTTGGGTTCCTGTGAAGCCACTACCAGATGCCTTTATTGTGAATATTGGAGACATTCTAGAGATTATAACAAATGGGACGTATCGTAGCATTGAGCATCGTGCAACTGTGAACTCTGAAAAAGAAAGGCTCTCAGTCGCCACATTTTACTCCCCCAGATTTGGTGCTGAGATTGGCCCGGCCTCCAGCTTGATCACTGAGCAAACACCTGCAGCATACACAAGGGTGGCAATTGAAGAATATTTCAAAGCGTTTTTTGAACGTAAGCTTAATGGAAAGTCTTTTCTTGACGAAATGAAGATTAAGTATAATGTTAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

373

Amino Acids

42.28

Weight (kDa)

5.69

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 171	7.6e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	219 - 317	1.8e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17010 AT1G17020 AT4G25300 AT4G25300 AT4G25310 AT4G25310
fragaria_vesca	FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06511 FvH4_3g06512 FvH4_3g06513 FvH4_3g06513 FvH4_3g06513 FvH4_3g17470
malus_domestica	MD03G1251500.v1.1 MD11G1271400.v1.1 MD11G1272000.v1.1 MD11G1272100.v1.1 MD11G1272300.v1.1 MD11G1272400.v1.1 MD11G1272500.v1.1
prunus_persica	Prupe.4G154800_v2.0.a1 Prupe.4G154800_v2.0.a1 Prupe.4G154900_v2.0.a1 Prupe.4G155000_v2.0.a1 Prupe.4G155100_v2.0.a1
pyrus_communis	pycom11g23990 pycom11g24060 pycom11g24070
rosa_chinensis	RchiOBHm_Chr5g0012661 RchiOBHm_Chr5g0028991 RchiOBHm_Chr5g0029011
rosa_laevigata	RLG00000031946 RLG00000033134
rosa_multiflora	Rmu_sc0003577.1_g000001 Rmu_sc0009042.1_g000002 Rmu_sc0011332.1_g000001 Rmu_sc0011896.1_g000003
rosa_roxburghii	Rroxscaffold_1G00050860 Rroxscaffold_1G00050890 Rroxscaffold_1G00063940
rosa_rugosa	Rorug05G0003500 Rorug05G0112200
rosa_samantha	Rh5AG097300 Rh5AG204300 Rh5AG204400 Rh5BG093700 Rh5BG202600 Rh5BG202700 Rh5CG223500 Rh5CG223600 Rh5DG092800 Rh5DG206300 Rh5DG206400
rosa_wichuraiana	Rw5G008530 Rw5G018520 Rw5G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
AarI	CACCTGC	1 cut(s)	1012
Acc36I	ACCTGC	1 cut(s)	1012
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	318, 361, 956
AgsI	TTSAA	7 cut(s)	65, 341, 352, 472, 1031, 1042, 1055
AjiI	CACGTC	2 cut(s)	196, 400
AjnI	CCWGG	2 cut(s)	245, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AleI	CACNNNNGTG	1 cut(s)	1019
AluBI	AGCT	5 cut(s)	306, 517, 605, 984, 1063
AluI	AGCT	5 cut(s)	306, 517, 605, 984, 1063
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	4 cut(s)	390, 530, 692, 840
AoxI	GGCC	5 cut(s)	497, 736, 772, 970, 975
ApeKI	GCWGC	1 cut(s)	1007
ApoI	RAATTY	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	971
AsuC2I	CCSGG	2 cut(s)	22, 974
AsuHPI	GGTGA	2 cut(s)	494, 733
AsuII	TTCGAA	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	308
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	308
BbvCI	CCTCAGC	1 cut(s)	690
BbvI	GCAGC	1 cut(s)	1019
BccI	CCATC	6 cut(s)	122, 161, 193, 641, 764, 785
BciT130I	CCWGG	2 cut(s)	247, 393
BclI	TGATCA	1 cut(s)	987
BcnI	CCSGG	2 cut(s)	22, 974
BcoDI	GTCTC	4 cut(s)	390, 530, 692, 840
BfaI	CTAG	4 cut(s)	57, 242, 572, 854
BfmI	CTRYAG	2 cut(s)	732, 1005
BfuAI	ACCTGC	1 cut(s)	1012
BisI	GCNGC	1 cut(s)	1008
BlsI	GCNGC	1 cut(s)	1009
Bme1390I	CCNGG	4 cut(s)	22, 247, 393, 974
BmgBI	CACGTC	2 cut(s)	196, 400
BmgT120I	GGNCC	1 cut(s)	971
BmiI	GGNNCC	2 cut(s)	251, 804
BmrFI	CCNGG	4 cut(s)	22, 247, 393, 974
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	5 cut(s)	23, 124, 718, 814, 901
BmuI	ACTGGG	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	484, 516
BpmI	CTGGAG	1 cut(s)	964
Bpu10I	CCTNAGC	1 cut(s)	690
Bpu14I	TTCGAA	1 cut(s)	642
BpuMI	CCSGG	2 cut(s)	22, 974
BsaBI	GATNNNNATC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	295, 312, 360, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	318, 361, 956
Bse1I	ACTGG	3 cut(s)	83, 283, 455
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	247, 393
BseDI	CCNNGG	4 cut(s)	295, 312, 360, 621
BseGI	GGATG	4 cut(s)	185, 672, 775, 796
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	3 cut(s)	318, 361, 956
BseMII	CTCAG	4 cut(s)	704, 942, 954, 984
BseNI	ACTGG	3 cut(s)	83, 283, 455
BseRI	GAGGAG	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	1019
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	5 cut(s)	499, 738, 774, 972, 977
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	21, 695, 974
BslFI	GGGAC	1 cut(s)	886
BslI	CCNNNNNNNGG	3 cut(s)	318, 361, 956
BsmAI	GTCTC	4 cut(s)	390, 530, 692, 840
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	886
BsnI	GGCC	5 cut(s)	499, 738, 774, 972, 977
Bsp119I	TTCGAA	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	987
Bsp19I	CCATGG	1 cut(s)	295
BspANI	GGCC	5 cut(s)	499, 738, 774, 972, 977
BspCNI	CTCAG	4 cut(s)	703, 941, 955, 985
BspLI	GGNNCC	2 cut(s)	251, 804
BspMAI	CTGCAG	1 cut(s)	1009
BspMI	ACCTGC	1 cut(s)	1012
BspQI	GCTCTTC	2 cut(s)	20, 313
BspT104I	TTCGAA	1 cut(s)	642
BsrI	ACTGG	3 cut(s)	83, 283, 455
BssECI	CCNNGG	4 cut(s)	295, 312, 360, 621
BssMI	GATC	1 cut(s)	987
BssT1I	CCWWGG	3 cut(s)	295, 312, 621
Bst2UI	CCWGG	2 cut(s)	247, 393
Bst4CI	ACNGT	4 cut(s)	38, 703, 745, 904
Bst6I	CTCTTC	4 cut(s)	20, 51, 313, 360
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstBI	TTCGAA	1 cut(s)	642
BstC8I	GCNNGC	2 cut(s)	262, 657
BstDEI	CTNAG	4 cut(s)	690, 928, 963, 993
BstDSI	CCRYGG	2 cut(s)	295, 360
BstEII	GGTNACC	1 cut(s)	131
BstF5I	GGATG	4 cut(s)	185, 672, 775, 796
BstKTI	GATC	1 cut(s)	990
BstMAI	GTCTC	4 cut(s)	390, 530, 692, 840
BstMBI	GATC	1 cut(s)	987
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	2 cut(s)	247, 393
BstNSI	RCATGY	1 cut(s)	34
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	4 cut(s)	20, 245, 391, 972
BstSFI	CTRYAG	2 cut(s)	732, 1005
BstV1I	GCAGC	1 cut(s)	1019
BstV2I	GAAGAC	1 cut(s)	441
BsuRI	GGCC	5 cut(s)	499, 738, 774, 972, 977
BtgI	CCRYGG	2 cut(s)	295, 360
BtgZI	GCGATG	1 cut(s)	674
BtrI	CACGTC	2 cut(s)	196, 400
BtsCI	GGATG	4 cut(s)	185, 672, 775, 796
BtsIMutI	CAGTG	1 cut(s)	990
BveI	ACCTGC	1 cut(s)	1012
Cac8I	GCNNGC	2 cut(s)	262, 657
Cfr13I	GGNCC	1 cut(s)	971
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	6 cut(s)	31, 143, 170, 296, 577, 595
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	4 cut(s)	690, 928, 963, 993
DpnI	GATC	1 cut(s)	989
DpnII	GATC	1 cut(s)	987
Eam1104I	CTCTTC	4 cut(s)	20, 51, 313, 360
EarI	CTCTTC	4 cut(s)	20, 51, 313, 360
Ecl136II	GAGCTC	1 cut(s)	306
Eco130I	CCWWGG	3 cut(s)	295, 312, 621
Eco147I	AGGCCT	2 cut(s)	499, 738
Eco24I	GRGCYC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	453
Eco91I	GGTNACC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	306
EcoO65I	GGTNACC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	245, 391
EcoT14I	CCWWGG	3 cut(s)	295, 312, 621
EcoT38I	GRGCYC	1 cut(s)	308
ErhI	CCWWGG	3 cut(s)	295, 312, 621
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	6 cut(s)	34, 146, 173, 299, 580, 598
FaqI	GGGAC	1 cut(s)	886
FatI	CATG	6 cut(s)	30, 142, 169, 295, 576, 594
FbaI	TGATCA	1 cut(s)	987
Fnu4HI	GCNGC	1 cut(s)	1008
FokI	GGATG	4 cut(s)	172, 679, 782, 803
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	1008
FspBI	CTAG	4 cut(s)	57, 242, 572, 854
GluI	GCNGC	1 cut(s)	1008
GsuI	CTGGAG	1 cut(s)	964
HaeIII	GGCC	5 cut(s)	499, 738, 774, 972, 977
HapII	CCGG	3 cut(s)	21, 695, 974
Hin1II	CATG	6 cut(s)	34, 146, 173, 299, 580, 598
HindIII	AAGCTT	2 cut(s)	603, 1061
HinfI	GANTC	2 cut(s)	218, 233
HpaII	CCGG	3 cut(s)	21, 695, 974
HphI	GGTGA	2 cut(s)	494, 733
Hpy166II	GTNNAC	2 cut(s)	292, 907
Hpy188I	TCNGA	8 cut(s)	163, 232, 238, 433, 533, 714, 727, 913
Hpy188III	TCNNGA	6 cut(s)	65, 125, 341, 469, 854, 1082
Hpy8I	GTNNAC	2 cut(s)	292, 907
HpyAV	CCTTC	4 cut(s)	398, 488, 531, 781
HpyCH4III	ACNGT	4 cut(s)	38, 703, 745, 904
HpyCH4IV	ACGT	4 cut(s)	195, 399, 875, 1057
HpyCH4V	TGCA	6 cut(s)	199, 264, 610, 655, 899, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	4 cut(s)	690, 928, 963, 993
HpySE526I	ACGT	4 cut(s)	195, 399, 875, 1057
Hsp92II	CATG	6 cut(s)	34, 146, 173, 299, 580, 598
Ksp22I	TGATCA	1 cut(s)	987
Kzo9I	GATC	1 cut(s)	987
LguI	GCTCTTC	2 cut(s)	20, 313
LmnI	GCTCC	2 cut(s)	255, 522
Lsp1109I	GCAGC	1 cut(s)	1019
LweI	GCATC	5 cut(s)	23, 124, 718, 814, 901
MaeI	CTAG	4 cut(s)	57, 242, 572, 854
MaeII	ACGT	4 cut(s)	195, 399, 875, 1057
MaeIII	GTNAC	3 cut(s)	85, 131, 628
MalI	GATC	1 cut(s)	989
MboI	GATC	1 cut(s)	987
MfeI	CAATTG	2 cut(s)	488, 1026
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	6 cut(s)	68, 157, 203, 336, 488, 1026
MseI	TTAA	3 cut(s)	1065, 1098, 1110
MslI	CAYNNNNRTG	4 cut(s)	126, 194, 726, 1019
MspI	CCGG	3 cut(s)	21, 695, 974
MspR9I	CCNGG	4 cut(s)	22, 247, 393, 974
MunI	CAATTG	2 cut(s)	488, 1026
MvaI	CCWGG	2 cut(s)	247, 393
MwoI	GCNNNNNNNGC	1 cut(s)	205
NciI	CCSGG	2 cut(s)	22, 974
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	987
NlaIII	CATG	6 cut(s)	34, 146, 173, 299, 580, 598
NlaIV	GGNNCC	2 cut(s)	251, 804
NmuCI	GTSAC	1 cut(s)	628
NspI	RCATGY	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	642
OliI	CACNNNNGTG	1 cut(s)	1019
PaqCI	CACCTGC	1 cut(s)	1012
PceI	AGGCCT	2 cut(s)	499, 738
PciSI	GCTCTTC	2 cut(s)	20, 313
PfeI	GAWTC	2 cut(s)	218, 233
PkrI	GCNGC	1 cut(s)	1009
PsiI	TTATAA	1 cut(s)	863
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	245, 391
PspEI	GGTNACC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	245, 391
PspN4I	GGNNCC	2 cut(s)	251, 804
PspPI	GGNCC	1 cut(s)	971
PstI	CTGCAG	1 cut(s)	1009
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	4 cut(s)	126, 194, 726, 1019
SacI	GAGCTC	1 cut(s)	308
SapI	GCTCTTC	2 cut(s)	20, 313
SaqAI	TTAA	3 cut(s)	1065, 1098, 1110
SatI	GCNGC	1 cut(s)	1008
Sau3AI	GATC	1 cut(s)	987
Sau96I	GGNCC	1 cut(s)	971
ScrFI	CCNGG	4 cut(s)	22, 247, 393, 974
SduI	GDGCHC	1 cut(s)	308
SfaNI	GCATC	5 cut(s)	23, 124, 718, 814, 901
SfcI	CTRYAG	2 cut(s)	732, 1005
SfuI	TTCGAA	1 cut(s)	642
SmiMI	CAYNNNNRTG	4 cut(s)	126, 194, 726, 1019
Sse9I	AATT	6 cut(s)	68, 157, 203, 336, 488, 1026
SseBI	AGGCCT	2 cut(s)	499, 738
SspI	AATATT	2 cut(s)	841, 1037
SspMI	CTAG	4 cut(s)	57, 242, 572, 854
SstI	GAGCTC	1 cut(s)	308
StuI	AGGCCT	2 cut(s)	499, 738
StyD4I	CCNGG	4 cut(s)	20, 245, 391, 972
StyI	CCWWGG	3 cut(s)	295, 312, 621
TaaI	ACNGT	4 cut(s)	38, 703, 745, 904
TaiI	ACGT	4 cut(s)	198, 402, 878, 1060
TaqI	TCGA	2 cut(s)	447, 642
TaqII	GACCGA	1 cut(s)	698
TasI	AATT	6 cut(s)	68, 157, 203, 336, 488, 1026
TfiI	GAWTC	2 cut(s)	218, 233
Tru1I	TTAA	3 cut(s)	1065, 1098, 1110
Tru9I	TTAA	3 cut(s)	1065, 1098, 1110
TscAI	CASTG	1 cut(s)	997
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	1 cut(s)	1007
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	2 cut(s)	683, 1106
TspGWI	ACGGA	3 cut(s)	377, 629, 672
TspRI	CASTG	1 cut(s)	997
XapI	RAATTY	1 cut(s)	336
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	4 cut(s)	57, 242, 572, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.