AT1G23130

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000362
Physical Location & Seq
Forward (+)
8200321 .. 8201246
926 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23130.1

Sequence Viewer

Length: 483 bp
ATGGCACAAGCTACGCGTCAGTCTTCTCTACAAGGGGAACTTGAGGTAGATATTGAGATCAAAGCATCGGCAAAGAAGTTCCATCACATGCTCTCTGGAAGACCACAAGATGTTGCGAAAGCCACTCCTGACATCCAGGGATGTGCTTTGCATGAGGGAGAGTTTGGCAAAGTTGGCAGTGTCATATTCTGGAACTATGCTATTGATGGGCAGCCCAAGGTGGCGAGGGAGAGGATCGAGGCAGTGGATCAGGAGAAGAATCTGTTAGTGCTCAGGGTAATAGATGGAGATCTGACGAAAGAGTTCAAGAGCTTCTTGGTCACTATCCAGGCAACCCCAAAGCTAAGAGGACCGGGAAGTGTGGTTAAGTGTCACTTAAAATATGAGAGGATTGACGAGAAGGTGGCTCCTCCGGAGAAGCTGCTCGAGTTGTTTGCCAAGCTAACCGAATCAATGGACGAAATGCTTTTGTCCGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

160

Amino Acids

17.86

Weight (kDa)

5.85

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 9 - 159 1.2e-55 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 16
AccIII TCCGGA 1 cut(s) 412
AclWI GGATC 2 cut(s) 242, 255
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 2 cut(s) 135, 327
AluBI AGCT 5 cut(s) 11, 312, 343, 421, 442
AluI AGCT 5 cut(s) 11, 312, 343, 421, 442
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 2 cut(s) 242, 255
Ama87I CYCGRG 1 cut(s) 425
Aor13HI TCCGGA 1 cut(s) 412
ApeKI GCWGC 2 cut(s) 211, 421
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 354
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 15, 106
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 223, 408
BccI CCATC 3 cut(s) 90, 200, 278
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 2 cut(s) 137, 329
BcnI CCSGG 1 cut(s) 354
BfaI CTAG 1 cut(s) 481
BglII AGATCT 1 cut(s) 289
BisI GCNGC 2 cut(s) 212, 422
BlsI GCNGC 2 cut(s) 213, 423
Bme1390I CCNGG 3 cut(s) 137, 329, 354
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 3 cut(s) 137, 329, 354
BmsI GCATC 1 cut(s) 74
BpiI GAAGAC 2 cut(s) 15, 106
Bpu10I CCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 136, 216
BsaWI WCCGGW 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 288
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 2 cut(s) 137, 329
BseDI CCNNGG 2 cut(s) 136, 216
BseGI GGATG 2 cut(s) 132, 146
BseJI GATNNNNATC 1 cut(s) 288
BseMII CTCAG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 399
BseXI GCAGC 2 cut(s) 223, 408
Bsh1236I CGCG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 2 cut(s) 353, 413
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 273
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 4 cut(s) 57, 234, 247, 289
BspCNI CTCAG 1 cut(s) 285
BspEI TCCGGA 1 cut(s) 412
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 2 cut(s) 242, 255
BssECI CCNNGG 2 cut(s) 136, 216
BssMI GATC 4 cut(s) 57, 234, 247, 289
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 137, 329
BstDEI CTNAG 2 cut(s) 272, 344
BstF5I GGATG 2 cut(s) 132, 146
BstFNI CGCG 1 cut(s) 16
BstKTI GATC 4 cut(s) 60, 237, 250, 292
BstMBI GATC 4 cut(s) 57, 234, 247, 289
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 2 cut(s) 137, 329
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 3 cut(s) 135, 327, 352
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 223, 408
BstV2I GAAGAC 2 cut(s) 15, 106
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtsCI GGATG 2 cut(s) 132, 146
BtsI GCAGTG 2 cut(s) 184, 249
BtsIMutI CAGTG 2 cut(s) 184, 249
Cfr13I GGNCC 1 cut(s) 350
CseI GACGC 1 cut(s) 5
CviAII CATG 2 cut(s) 88, 152
CviJI RGCY 8 cut(s) 11, 122, 214, 312, 343, 407, 421, 442
CviKI_1 RGCY 8 cut(s) 11, 122, 214, 312, 343, 407, 421, 442
DdeI CTNAG 2 cut(s) 272, 344
DpnI GATC 4 cut(s) 59, 236, 249, 291
DpnII GATC 4 cut(s) 57, 234, 247, 289
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 135, 327
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 91, 155
FaiI YATR 5 cut(s) 89, 153, 185, 198, 384
FalI AAGNNNNNCTT 6 cut(s) 24, 56, 299, 331, 359, 391
FatI CATG 2 cut(s) 87, 151
Fnu4HI GCNGC 2 cut(s) 212, 422
FokI GGATG 2 cut(s) 119, 153
Fsp4HI GCNGC 2 cut(s) 212, 422
FspBI CTAG 1 cut(s) 481
GluI GCNGC 2 cut(s) 212, 422
HapII CCGG 2 cut(s) 353, 413
HgaI GACGC 1 cut(s) 5
Hin1II CATG 2 cut(s) 91, 155
HinfI GANTC 2 cut(s) 259, 449
HpaII CCGG 2 cut(s) 353, 413
Hpy188I TCNGA 2 cut(s) 294, 475
Hpy188III TCNNGA 6 cut(s) 96, 128, 190, 251, 307, 413
HpyAV CCTTC 1 cut(s) 394
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 272, 344
Hsp92II CATG 2 cut(s) 91, 155
Kpn2I TCCGGA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 57, 234, 247, 289
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 2 cut(s) 223, 408
LweI GCATC 1 cut(s) 74
MaeI CTAG 1 cut(s) 481
MaeIII GTNAC 2 cut(s) 319, 371
MalI GATC 4 cut(s) 59, 236, 249, 291
MboI GATC 4 cut(s) 57, 234, 247, 289
MboII GAAGA 3 cut(s) 15, 111, 268
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 273
MluI ACGCGT 1 cut(s) 14
MnlI CCTC 8 cut(s) 37, 148, 219, 225, 232, 341, 381, 420
MroI TCCGGA 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 2 cut(s) 366, 377
MspI CCGG 2 cut(s) 353, 413
MspR9I CCNGG 3 cut(s) 137, 329, 354
MvaI CCWGG 2 cut(s) 137, 329
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 174
NciI CCSGG 1 cut(s) 354
NdeII GATC 4 cut(s) 57, 234, 247, 289
NlaIII CATG 2 cut(s) 91, 155
NlaIV GGNNCC 1 cut(s) 408
NmuCI GTSAC 2 cut(s) 319, 371
NspI RCATGY 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 259, 449
PkrI GCNGC 2 cut(s) 213, 423
Psp6I CCWGG 2 cut(s) 135, 327
PspGI CCWGG 2 cut(s) 135, 327
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 1 cut(s) 350
PspXI VCTCGAGB 1 cut(s) 425
PsuI RGATCY 1 cut(s) 289
SaqAI TTAA 2 cut(s) 366, 377
SatI GCNGC 2 cut(s) 212, 422
Sau3AI GATC 4 cut(s) 57, 234, 247, 289
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 137, 329, 354
SduI GDGCHC 1 cut(s) 273
SetI ASST 8 cut(s) 13, 48, 222, 314, 345, 405, 423, 444
SfaNI GCATC 1 cut(s) 74
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 425
SmlI CTYRAG 2 cut(s) 41, 425
SmoI CTYRAG 2 cut(s) 41, 425
SspMI CTAG 1 cut(s) 481
StyD4I CCNGG 3 cut(s) 135, 327, 352
StyI CCWWGG 1 cut(s) 216
TaqI TCGA 2 cut(s) 237, 426
TfiI GAWTC 2 cut(s) 259, 449
Tru1I TTAA 2 cut(s) 366, 377
Tru9I TTAA 2 cut(s) 366, 377
TscAI CASTG 2 cut(s) 184, 249
TseFI GTSAC 2 cut(s) 319, 371
TseI GCWGC 2 cut(s) 211, 421
Tsp45I GTSAC 2 cut(s) 319, 371
TspRI CASTG 2 cut(s) 184, 249
VpaK11BI GGWCC 1 cut(s) 350
XceI RCATGY 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.