AT1G70890

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000362
Physical Location & Seq
Reverse (-)
26725521 .. 26726652
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70890.1

Sequence Viewer

Length: 477 bp
ATGGCAGAAGCGTCTAGTTTGGTGGGGAAACTTGAGACAGAAGTGGAGATCAAAGCTTCGGCCAAAAAGTTCCATCACATGTTTACCGAGAGACCACACCATGTCTCCAAAGCAACTCCAGATAAAATTCATGGATGTGAGCTGCACGAAGGCGACTGGGGCAAAGTCGGCTCTATCGTCATCTGGAAATACGTTCATGATGGAAAGTTAACAGTGGGGAAGAATAAGATCGAGGCGGTGGATCCGGAGAAGAACCTGATCACGTTCAAGGTTTTAGAAGGTGATCTGATGAATGAGTACAAGAGCTTCGCATTTACACTCCAAGTGACCCCTAAGCAAGGGGAGTCAGGGAGTATTGCGCACTGGCACCTGGAGTATGAGAAAATTAGCGAGGAGGTAGCTCATCCCGAAACCCTTCTCCAATTCTGTGTCGAGATCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

158

Amino Acids

17.89

Weight (kDa)

5.54

Isoelectric Point (pI)

23.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 6 - 157 4e-65 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 366
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 1 cut(s) 236
AclWI GGATC 2 cut(s) 236, 249
AcoI YGGCCR 2 cut(s) 60, 465
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 338
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 4 cut(s) 56, 142, 306, 401
AluI AGCT 4 cut(s) 56, 142, 306, 401
Alw26I GTCTC 3 cut(s) 29, 85, 109
AlwI GGATC 2 cut(s) 236, 249
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 2 cut(s) 60, 465
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 293
BamHI GGATCC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 366
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 81, 194
BciT130I CCWGG 1 cut(s) 371
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 3 cut(s) 29, 85, 109
BfaI CTAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 435
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 243, 368
BmrFI CCNGG 1 cut(s) 371
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpmI CTGGAG 2 cut(s) 102, 392
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 468
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 161, 368
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 2 cut(s) 140, 403
BseLI CCNNNNNNNGG 1 cut(s) 338
BseNI ACTGG 2 cut(s) 161, 368
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 128
BshFI GGCC 2 cut(s) 62, 467
BshNI GGYRCC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 3 cut(s) 29, 85, 109
BsnI GGCC 2 cut(s) 62, 467
Bso31I GGTCTC 1 cut(s) 85
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 7 cut(s) 48, 228, 241, 258, 283, 435, 447
BspACI CCGC 1 cut(s) 236
BspANI GGCC 2 cut(s) 62, 467
BspEI TCCGGA 1 cut(s) 244
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 243, 368
BspPI GGATC 2 cut(s) 236, 249
BspT107I GGYRCC 1 cut(s) 366
BspTNI GGTCTC 1 cut(s) 85
BsrI ACTGG 2 cut(s) 161, 368
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 7 cut(s) 48, 228, 241, 258, 283, 435, 447
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 333
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 140, 403
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 7 cut(s) 51, 231, 244, 261, 286, 438, 450
BstMAI GTCTC 3 cut(s) 29, 85, 109
BstMBI GATC 7 cut(s) 48, 228, 241, 258, 283, 435, 447
BstMWI GCNNNNNNNGC 2 cut(s) 159, 168
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 241, 435
BstYI RGATCY 2 cut(s) 241, 435
BsuRI GGCC 2 cut(s) 62, 467
BtsCI GGATG 2 cut(s) 140, 403
BtsIMutI CAGTG 2 cut(s) 219, 361
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 298
CviAII CATG 4 cut(s) 79, 101, 131, 197
CviJI RGCY 7 cut(s) 56, 62, 142, 171, 306, 401, 467
CviKI_1 RGCY 7 cut(s) 56, 62, 142, 171, 306, 401, 467
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 333
DpnI GATC 7 cut(s) 50, 230, 243, 260, 285, 437, 449
DpnII GATC 7 cut(s) 48, 228, 241, 258, 283, 435, 447
EaeI YGGCCR 2 cut(s) 60, 465
Eco31I GGTCTC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 369
FaeI CATG 4 cut(s) 82, 104, 134, 200
FaiI YATR 5 cut(s) 80, 102, 132, 198, 378
FatI CATG 4 cut(s) 78, 100, 130, 196
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 2 cut(s) 147, 390
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 15
FspI TGCGCA 1 cut(s) 360
GlaI GCGC 1 cut(s) 360
GluI GCNGC 1 cut(s) 143
GsuI CTGGAG 2 cut(s) 102, 392
HaeIII GGCC 2 cut(s) 62, 467
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 361
Hin1II CATG 4 cut(s) 82, 104, 134, 200
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 1 cut(s) 344
HpaI GTTAAC 1 cut(s) 210
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 84, 210
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 6 cut(s) 119, 184, 197, 245, 407, 433
Hpy8I GTNNAC 2 cut(s) 84, 210
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 3 cut(s) 143, 272, 425
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 192, 263
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 168
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 2 cut(s) 192, 263
Hsp92II CATG 4 cut(s) 82, 104, 134, 200
HspAI GCGC 1 cut(s) 359
Kpn2I TCCGGA 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 258
KspAI GTTAAC 1 cut(s) 210
Kzo9I GATC 7 cut(s) 48, 228, 241, 258, 283, 435, 447
LpnPI CCDG 9 cut(s) 132, 142, 169, 258, 269, 333, 349, 356, 383
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 192, 263
MaeIII GTNAC 1 cut(s) 325
MalI GATC 7 cut(s) 50, 230, 243, 260, 285, 437, 449
MboI GATC 7 cut(s) 48, 228, 241, 258, 283, 435, 447
MboII GAAGA 2 cut(s) 232, 262
MflI RGATCY 2 cut(s) 241, 435
MluCI AATT 3 cut(s) 126, 384, 422
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 4 cut(s) 226, 385, 388, 463
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 159, 168
NdeII GATC 7 cut(s) 48, 228, 241, 258, 283, 435, 447
NlaIII CATG 4 cut(s) 82, 104, 134, 200
NlaIV GGNNCC 2 cut(s) 243, 368
NmuCI GTSAC 1 cut(s) 325
NsbI TGCGCA 1 cut(s) 360
NspI RCATGY 1 cut(s) 82
PagI TCATGA 1 cut(s) 196
PciI ACATGT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 414
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PscI ACATGT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 243, 368
PsuI RGATCY 2 cut(s) 241, 435
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 7 cut(s) 48, 228, 241, 258, 283, 435, 447
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 3 cut(s) 126, 384, 422
SsiI CCGC 1 cut(s) 236
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 195, 266
TaqI TCGA 3 cut(s) 231, 432, 450
TasI AATT 3 cut(s) 126, 384, 422
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 219, 368
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 3 cut(s) 119, 185, 305
TspRI CASTG 2 cut(s) 219, 368
XagI CCTNNNNNAGG 1 cut(s) 336
XapI RAATTY 1 cut(s) 126
XceI RCATGY 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.