MD13G1022900.v1.1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000362
Physical Location & Seq
Reverse (-)
1645481 .. 1646431
951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1022900.v1.1.491

Sequence Viewer

Length: 468 bp
ATGTCTAGCGATTGTGGTAAGCTGGAGACCGATGTTGAAATCAAGGCTTCTGCTGCCAAGTTCCATGAAATGTTCACACACAAACCACACCACATCTCCAACGCCAGCAATAGAAACATTCAGGGCTGTGACCTACATGAAGGTGACTGGGGAACCGTCGGATCTGTGGTCTACTGGAATTATTTCCATGATGGAAAAGCCAAAGTTGCTAAGGAGTTGATTGAAGCCATAGACGCTGAAAATAATCTGATCACTTTCAAAGTGATTGAAGGAGATCTTATGGAGCATTACAAGAGCTTCAAGATCACCATCCACGGAACTCCGAAAGACGAGGGATGCAACGTGCACTGGACTATGGAGTATGAGAAGCACCATGACGATATTGAAGATCCACATACATTGCTCCAGTTTGTAGTTGAGCTCTCCAAAGATATTGATGCTCACCTTACAAGCACCGATGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

156

Amino Acids

17.62

Weight (kDa)

5.32

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 6 - 151 8.1e-57 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AclWI GGATC 2 cut(s) 169, 383
AgsI TTSAA 6 cut(s) 38, 224, 259, 269, 301, 386
AluBI AGCT 3 cut(s) 22, 297, 421
AluI AGCT 3 cut(s) 22, 297, 421
Alw21I GWGCWC 2 cut(s) 348, 423
Alw26I GTCTC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 344
AlwI GGATC 2 cut(s) 169, 383
ApaLI GTGCAC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 155, 298, 434
BaeGI GKGCMC 1 cut(s) 348
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 348, 423
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 185, 317
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 274
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 3 cut(s) 326, 427, 448
BmuI ACTGGG 1 cut(s) 157
BpmI CTGGAG 2 cut(s) 44, 389
Bpu10I CCTNAGC 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse1I ACTGG 4 cut(s) 152, 179, 353, 406
Bse3DI GCAATG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 309, 341
BseJI GATNNNNATC 1 cut(s) 308
BseMI GCAATG 1 cut(s) 398
BseNI ACTGG 4 cut(s) 152, 179, 353, 406
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 1 cut(s) 40
BsiHKAI GWGCWC 2 cut(s) 348, 423
BsmAI GTCTC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 348, 423
Bsp143I GATC 5 cut(s) 161, 249, 274, 303, 388
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 2 cut(s) 169, 383
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 398
BsrI ACTGG 4 cut(s) 152, 179, 353, 406
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 5 cut(s) 161, 249, 274, 303, 388
Bst4CI ACNGT 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 309, 341
BstKTI GATC 5 cut(s) 164, 252, 277, 306, 391
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 5 cut(s) 161, 249, 274, 303, 388
BstMWI GCNNNNNNNGC 3 cut(s) 53, 206, 233
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 3 cut(s) 161, 274, 388
BstYI RGATCY 3 cut(s) 161, 274, 388
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 2 cut(s) 309, 341
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 106
CseI GACGC 1 cut(s) 242
CspCI CAANNNNNGTGG 2 cut(s) 381, 416
CviAII CATG 4 cut(s) 65, 137, 188, 374
CviJI RGCY 7 cut(s) 22, 47, 126, 200, 227, 297, 421
CviKI_1 RGCY 7 cut(s) 22, 47, 126, 200, 227, 297, 421
DdeI CTNAG 1 cut(s) 210
DpnI GATC 5 cut(s) 163, 251, 276, 305, 390
DpnII GATC 5 cut(s) 161, 249, 274, 303, 388
Ecl136II GAGCTC 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 423
FaeI CATG 4 cut(s) 68, 140, 191, 377
FaiI YATR 9 cut(s) 66, 138, 189, 230, 281, 356, 363, 375, 396
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 4 cut(s) 64, 136, 187, 373
FbaI TGATCA 1 cut(s) 249
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 296, 348
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 2 cut(s) 44, 389
HgaI GACGC 1 cut(s) 242
Hin1II CATG 4 cut(s) 68, 140, 191, 377
HphI GGTGA 3 cut(s) 155, 298, 434
Hpy166II GTNNAC 3 cut(s) 75, 172, 346
Hpy188I TCNGA 3 cut(s) 161, 249, 324
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 3 cut(s) 75, 172, 346
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 134, 263
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 339, 346, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 206, 233
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 4 cut(s) 68, 140, 191, 377
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 5 cut(s) 161, 249, 274, 303, 388
LmnI GCTCC 2 cut(s) 283, 408
LpnPI CCDG 7 cut(s) 8, 107, 118, 133, 160, 334, 419
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 3 cut(s) 326, 427, 448
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 128, 143
MalI GATC 5 cut(s) 163, 251, 276, 305, 390
MboI GATC 5 cut(s) 161, 249, 274, 303, 388
MboII GAAGA 1 cut(s) 398
MflI RGATCY 3 cut(s) 161, 274, 388
MhlI GDGCHC 2 cut(s) 348, 423
MluCI AATT 1 cut(s) 178
MmeI TCCRAC 2 cut(s) 123, 139
MnlI CCTC 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 53, 206, 233
NdeII GATC 5 cut(s) 161, 249, 274, 303, 388
NlaIII CATG 4 cut(s) 68, 140, 191, 377
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 2 cut(s) 128, 143
PdmI GAANNNNTTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 154
PsuI RGATCY 3 cut(s) 161, 274, 388
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 423
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 5 cut(s) 161, 249, 274, 303, 388
SduI GDGCHC 2 cut(s) 348, 423
SetI ASST 7 cut(s) 24, 135, 145, 299, 345, 423, 447
SfaNI GCATC 3 cut(s) 326, 427, 448
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 423
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 345
TaqII GACCGA 1 cut(s) 44
TasI AATT 1 cut(s) 178
TscAI CASTG 1 cut(s) 353
TseFI GTSAC 2 cut(s) 128, 143
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 2 cut(s) 128, 143
TspDTI ATGAA 2 cut(s) 81, 153
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.