AT1G70850

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000362
Physical Location & Seq
Reverse (-)
26714866 .. 26716901
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70850.2

Sequence Viewer

Length: 951 bp
ATGGCAAAAACTGAAGCTCCTAGTTTGGTGGGGAAGCTAGAGACAGAAGTGGAGATCAAAGCTTCGGCTGGACAGTTTCATCACATGTTTGCCGGGAAGCCACACCATGTCTCCAAAGCAAGTCCAGGCAACATTCAGAGCTGTGATCTGCACGAAGGCGACTGGGGCACTGTCGGCTCTATCGTCTTCTGGAATTACGTTCACGATGGGGAGGCAAAGGTGGCGAAGGAGAGAATCGAGGCGGTGGAGCCGGAGAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGTACAAGAGCTTTTTGATCACGATCCAGGTGACCCCTAAGCATGGAGGGCCTGGAAGTATTGTGCATTGGCACCTTGAGTATGAGAAAATCAGCGACGAGGTAGCTCATCCCGAAACTCTCCTCCAATTCTGTGTTGAGGTCTCCCAAGAGATCGACGAACATCTCTTATCCGAGGAAGAAGAGGTGAAGACAACAGAGACACTTGAGACAGAGGTGGAGATCAAAGCTTCCGCTGAGAAGTTCCATCACATGTTCGCCGGGAAACCACACCATGTCTCTAAAGCAACTCCAGGAAACATTCAGAGCTGTGATCTGCACGAAGGTGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATGATGGGGAGGCAAAGGTGGCAAAGGAGAGGATTGAGGCGGTGGATCCAGAGAAAAACTTGATCACGTTCAGGGTTATAGAAGGTGATCTGATGAAAGAGTACAAGAGCTTCGTAATCACAATCCAAGTGACTCCTAAGCATGGAGGTTCAGGGAGTGTGGTGCATTGGCACTTCGAGTATGAGAAAATAAACGAGGAGGTGGCTCATCCTGAGACTCTCCTCCAGTTTGCCGTCGAAGTCTCCAAAGAAATCGACGAACATCTCTTGGCCGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

316

Amino Acids

35.57

Weight (kDa)

5.14

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 8 - 159 4.4e-63 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 12 - 130 2.8e-06 Polyketide cyclase / dehydrase and lipid transport
Bet_v_1 PF00407 165 - 225 1.6e-22 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 372
AciI CCGC 3 cut(s) 242, 534, 710
AclWI GGATC 3 cut(s) 319, 710, 723
AcoI YGGCCR 1 cut(s) 939
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 2 cut(s) 305, 773
AfiI CCNNNNNNNGG 2 cut(s) 344, 812
AflIII ACRYGT 2 cut(s) 84, 552
AjnI CCWGG 4 cut(s) 124, 327, 352, 592
AleI CACNNNNGTG 1 cut(s) 624
AluBI AGCT 9 cut(s) 17, 37, 62, 141, 312, 407, 530, 609, 780
AluI AGCT 9 cut(s) 17, 37, 62, 141, 312, 407, 530, 609, 780
Alw26I GTCTC 8 cut(s) 35, 115, 448, 494, 503, 583, 878, 916
AlwI GGATC 3 cut(s) 319, 710, 723
AoxI GGCC 2 cut(s) 350, 939
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 2 cut(s) 94, 562
AsuHPI GGTGA 5 cut(s) 299, 343, 499, 638, 767
BaeGI GKGCMC 2 cut(s) 170, 638
BamHI GGATCC 1 cut(s) 715
BanI GGYRCC 1 cut(s) 372
BarI GAAGNNNNNNTAC 2 cut(s) 764, 796
BbsI GAAGAC 3 cut(s) 178, 497, 646
BccI CCATC 3 cut(s) 200, 555, 668
BceAI ACGGC 1 cut(s) 887
BciT130I CCWGG 4 cut(s) 126, 329, 354, 594
BclI TGATCA 3 cut(s) 264, 318, 732
BcnI CCSGG 2 cut(s) 94, 562
BcoDI GTCTC 8 cut(s) 35, 115, 448, 494, 503, 583, 878, 916
BfaI CTAG 2 cut(s) 21, 38
Bme1390I CCNGG 6 cut(s) 94, 126, 329, 354, 562, 594
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 3 cut(s) 249, 374, 717
BmrFI CCNGG 6 cut(s) 94, 126, 329, 354, 562, 594
BmrI ACTGGG 2 cut(s) 172, 640
BmuI ACTGGG 2 cut(s) 172, 640
BpiI GAAGAC 3 cut(s) 178, 497, 646
BpmI CTGGAG 2 cut(s) 576, 878
Bpu10I CCTNAGC 2 cut(s) 339, 807
BpuEI CTTGAG 2 cut(s) 398, 527
BpuMI CCSGG 2 cut(s) 94, 562
BsaBI GATNNNNATC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 448
BsaJI CCNNGG 2 cut(s) 474, 942
BsaXI ACNNNNNCTCC 3 cut(s) 31, 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 812
Bse1I ACTGG 3 cut(s) 167, 635, 895
Bse8I GATNNNNATC 1 cut(s) 323
BseBI CCWGG 4 cut(s) 126, 329, 354, 594
BseDI CCNNGG 2 cut(s) 474, 942
BseGI GGATG 2 cut(s) 409, 877
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 2 cut(s) 344, 812
BseMII CTCAG 2 cut(s) 528, 873
BseNI ACTGG 3 cut(s) 167, 635, 895
BseRI GAGGAG 3 cut(s) 413, 881, 881
BseSI GKGCMC 2 cut(s) 170, 638
BsgI GTGCAG 2 cut(s) 134, 602
BshFI GGCC 2 cut(s) 352, 941
BshNI GGYRCC 1 cut(s) 372
BsiSI CCGG 3 cut(s) 93, 251, 561
BslI CCNNNNNNNGG 2 cut(s) 344, 812
BsmAI GTCTC 8 cut(s) 35, 115, 448, 494, 503, 583, 878, 916
BsnI GGCC 2 cut(s) 352, 941
Bso31I GGTCTC 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 170, 638
BspACI CCGC 3 cut(s) 242, 534, 710
BspANI GGCC 2 cut(s) 352, 941
BspCNI CTCAG 2 cut(s) 529, 874
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 3 cut(s) 249, 374, 717
BspPI GGATC 3 cut(s) 319, 710, 723
BspT107I GGYRCC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 448
BsrI ACTGG 3 cut(s) 167, 635, 895
BssECI CCNNGG 2 cut(s) 474, 942
Bst2UI CCWGG 4 cut(s) 126, 329, 354, 594
Bst4CI ACNGT 3 cut(s) 75, 172, 640
Bst6I CTCTTC 1 cut(s) 477
BstDEI CTNAG 4 cut(s) 339, 537, 807, 882
BstEII GGTNACC 1 cut(s) 331
BstF5I GGATG 2 cut(s) 409, 877
BstMAI GTCTC 8 cut(s) 35, 115, 448, 494, 503, 583, 878, 916
BstMWI GCNNNNNNNGC 6 cut(s) 165, 174, 221, 349, 642, 689
BstNI CCWGG 4 cut(s) 126, 329, 354, 594
BstNSI RCATGY 2 cut(s) 88, 556
BstPI GGTNACC 1 cut(s) 331
BstSCI CCNGG 6 cut(s) 92, 124, 327, 352, 560, 592
BstSLI GKGCMC 2 cut(s) 170, 638
BstV2I GAAGAC 3 cut(s) 178, 497, 646
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BsuRI GGCC 2 cut(s) 352, 941
BtsCI GGATG 2 cut(s) 409, 877
BtsIMutI CAGTG 1 cut(s) 168
CciI TCATGA 1 cut(s) 670
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 2 cut(s) 304, 772
CviAII CATG 7 cut(s) 85, 107, 344, 553, 575, 671, 812
CviQI GTAC 2 cut(s) 304, 772
DdeI CTNAG 4 cut(s) 339, 537, 807, 882
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 331
EcoRII CCWGG 4 cut(s) 124, 327, 352, 592
FaeI CATG 7 cut(s) 88, 110, 347, 556, 578, 674, 815
FatI CATG 7 cut(s) 84, 106, 343, 552, 574, 670, 811
FbaI TGATCA 3 cut(s) 264, 318, 732
FokI GGATG 2 cut(s) 396, 864
FspBI CTAG 2 cut(s) 21, 38
GsuI CTGGAG 2 cut(s) 576, 878
HaeIII GGCC 2 cut(s) 352, 941
HapII CCGG 3 cut(s) 93, 251, 561
Hin1II CATG 7 cut(s) 88, 110, 347, 556, 578, 674, 815
HindIII AAGCTT 2 cut(s) 60, 528
HinfI GANTC 3 cut(s) 234, 802, 886
HpaII CCGG 3 cut(s) 93, 251, 561
HphI GGTGA 5 cut(s) 299, 343, 499, 638, 767
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 5 cut(s) 138, 294, 475, 606, 762
Hpy188III TCNNGA 8 cut(s) 190, 203, 322, 413, 658, 671, 719, 881
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 4 cut(s) 401, 461, 908, 929
HpyAV CCTTC 5 cut(s) 149, 220, 278, 617, 746
HpyCH4III ACNGT 3 cut(s) 75, 172, 640
HpyCH4IV ACGT 4 cut(s) 198, 269, 666, 737
HpyCH4V TGCA 4 cut(s) 151, 367, 619, 835
HpyF10VI GCNNNNNNNGC 6 cut(s) 165, 174, 221, 349, 642, 689
HpyF3I CTNAG 4 cut(s) 339, 537, 807, 882
HpySE526I ACGT 4 cut(s) 198, 269, 666, 737
Hsp92II CATG 7 cut(s) 88, 110, 347, 556, 578, 674, 815
Ksp22I TGATCA 3 cut(s) 264, 318, 732
LmnI GCTCC 2 cut(s) 22, 247
MaeI CTAG 2 cut(s) 21, 38
MaeII ACGT 4 cut(s) 198, 269, 666, 737
MaeIII GTNAC 3 cut(s) 331, 626, 799
MboII GAAGA 6 cut(s) 178, 268, 491, 494, 502, 646
MflI RGATCY 1 cut(s) 715
MhlI GDGCHC 2 cut(s) 170, 638
MluCI AATT 2 cut(s) 193, 428
MlyI GAGTC 2 cut(s) 796, 880
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 3 cut(s) 93, 251, 561
MspR9I CCNGG 6 cut(s) 94, 126, 329, 354, 562, 594
MvaI CCWGG 4 cut(s) 126, 329, 354, 594
MwoI GCNNNNNNNGC 6 cut(s) 165, 174, 221, 349, 642, 689
NciI CCSGG 2 cut(s) 94, 562
NlaIII CATG 7 cut(s) 88, 110, 347, 556, 578, 674, 815
NlaIV GGNNCC 3 cut(s) 249, 374, 717
NmuCI GTSAC 3 cut(s) 331, 626, 799
NspI RCATGY 2 cut(s) 88, 556
OliI CACNNNNGTG 1 cut(s) 624
PagI TCATGA 1 cut(s) 670
PciI ACATGT 2 cut(s) 84, 552
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 648
PfeI GAWTC 1 cut(s) 234
PfoI TCCNGGA 1 cut(s) 592
PleI GAGTC 2 cut(s) 796, 880
PpsI GAGTC 2 cut(s) 796, 880
PscI ACATGT 2 cut(s) 84, 552
Psp6I CCWGG 4 cut(s) 124, 327, 352, 592
PspEI GGTNACC 1 cut(s) 331
PspGI CCWGG 4 cut(s) 124, 327, 352, 592
PspN4I GGNNCC 3 cut(s) 249, 374, 717
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 1 cut(s) 715
RsaI GTAC 2 cut(s) 305, 773
RsaNI GTAC 2 cut(s) 304, 772
RseI CAYNNNNRTG 1 cut(s) 624
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 2 cut(s) 796, 880
ScrFI CCNGG 6 cut(s) 94, 126, 329, 354, 562, 594
SduI GDGCHC 2 cut(s) 170, 638
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 2 cut(s) 377, 506
SmoI CTYRAG 2 cut(s) 377, 506
Sse9I AATT 2 cut(s) 193, 428
SsiI CCGC 3 cut(s) 242, 534, 710
SspMI CTAG 2 cut(s) 21, 38
StyD4I CCNGG 6 cut(s) 92, 124, 327, 352, 560, 592
TaaI ACNGT 3 cut(s) 75, 172, 640
TaiI ACGT 4 cut(s) 201, 272, 669, 740
TaqI TCGA 5 cut(s) 237, 456, 846, 906, 924
TasI AATT 2 cut(s) 193, 428
TatI WGTACW 2 cut(s) 303, 771
TfiI GAWTC 1 cut(s) 234
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 3 cut(s) 331, 626, 799
Tsp45I GTSAC 3 cut(s) 331, 626, 799
TspDTI ATGAA 4 cut(s) 68, 311, 659, 779
TspRI CASTG 1 cut(s) 175
XceI RCATGY 2 cut(s) 88, 556
XspI CTAG 2 cut(s) 21, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.