RLG00000006068

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000362
Physical Location & Seq
Reverse (-)
4063424 .. 4063968
545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006068

Sequence Viewer

Length: 459 bp
ATGGCTTTGACTGGTAACATAGAGACGGATGTAGAAATCAAGGCTTCTGCTGCAAAGTTTCACGAAATGTTCACCCACAATCCACACCACATTTCCAATGTCAGCTCCAACAACATTCAAGGCTGTGACTTACATGAAGGTGACTGGGGAACAGTCGGTACTATCATCTACTGGAATTACTTCCATGATGGGAAAGCTAGAGTTGCCAAGGAAAGAATTGAAGCCCTAGACGCGGAAAAAAACTTGGTGACTTTCAGAGTGATTGAGGGAGACCTTATGGAGCATTACAAGAGCTTCTTGATCACCATTCAAGCCACTCCGAAAGGCGAGGGCTGCTCCGTGCACTGGACTATGGAGTATGAGAAGCATCATGGCGATATTACCGACCCACATACGCTGCTCCAGTTTGCAGTCGAGGTTTCCAACGACATCGATGTTCACCTTACTGCCCAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

153

Amino Acids

17.2

Weight (kDa)

5.23

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 150 8.3e-55 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 6 - 122 2.7e-07 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 233
AciI CCGC 1 cut(s) 233
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 232, 345
AgsI TTSAA 3 cut(s) 119, 221, 311
AluBI AGCT 3 cut(s) 105, 197, 294
AluI AGCT 3 cut(s) 105, 197, 294
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 17, 264
Alw44I GTGCAC 1 cut(s) 341
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 3 cut(s) 50, 333, 397
Asp700I GAANNNNTTC 1 cut(s) 179
AsuHPI GGTGA 5 cut(s) 64, 152, 259, 295, 431
BaeGI GKGCMC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 37, 320, 384
BccI CCATC 1 cut(s) 182
BclI TGATCA 1 cut(s) 300
BcoDI GTCTC 2 cut(s) 17, 264
BfaI CTAG 2 cut(s) 198, 227
BisI GCNGC 3 cut(s) 51, 334, 398
BlsI GCNGC 3 cut(s) 52, 335, 399
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 376
BmuI ACTGGG 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpmI CTGGAG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 345
Bse1I ACTGG 5 cut(s) 16, 149, 176, 350, 403
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 232, 345
BseNI ACTGG 5 cut(s) 16, 149, 176, 350, 403
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 3 cut(s) 37, 320, 384
Bsh1236I CGCG 1 cut(s) 233
BshVI ATCGAT 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 345
BslI CCNNNNNNNGG 2 cut(s) 232, 345
BsmAI GTCTC 2 cut(s) 17, 264
BsmBI CGTCTC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 300
BspACI CCGC 1 cut(s) 233
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 264
BsrI ACTGG 5 cut(s) 16, 149, 176, 350, 403
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 154
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 233
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 2 cut(s) 17, 264
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 4 cut(s) 50, 203, 230, 333
BstSLI GKGCMC 1 cut(s) 345
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 37, 320, 384
Bsu15I ATCGAT 1 cut(s) 432
BsuTUI ATCGAT 1 cut(s) 432
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 343
ClaI ATCGAT 1 cut(s) 432
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 159
CviAII CATG 3 cut(s) 134, 185, 371
CviJI RGCY 9 cut(s) 5, 44, 105, 123, 197, 224, 294, 314, 333
CviKI_1 RGCY 9 cut(s) 5, 44, 105, 123, 197, 224, 294, 314, 333
CviQI GTAC 1 cut(s) 159
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 3 cut(s) 137, 188, 374
FaiI YATR 8 cut(s) 20, 135, 186, 278, 353, 360, 372, 393
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 3 cut(s) 133, 184, 370
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 51, 334, 398
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 51, 334, 398
FspBI CTAG 2 cut(s) 198, 227
GluI GCNGC 3 cut(s) 51, 334, 398
GsuI CTGGAG 1 cut(s) 386
HgaI GACGC 1 cut(s) 239
Hin1II CATG 3 cut(s) 137, 188, 374
HphI GGTGA 5 cut(s) 64, 152, 259, 295, 431
Hpy166II GTNNAC 3 cut(s) 72, 343, 439
Hpy188I TCNGA 2 cut(s) 257, 321
Hpy188III TCNNGA 2 cut(s) 62, 298
Hpy8I GTNNAC 3 cut(s) 72, 343, 439
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 53, 343, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 203, 230, 333
Hsp92II CATG 3 cut(s) 137, 188, 374
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 4 cut(s) 110, 280, 341, 405
LpnPI CCDG 4 cut(s) 130, 157, 331, 416
Lsp1109I GCAGC 3 cut(s) 37, 320, 384
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 198, 227
MaeIII GTNAC 4 cut(s) 14, 125, 140, 247
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 2 cut(s) 175, 216
MmeI TCCRAC 2 cut(s) 132, 447
MnlI CCTC 3 cut(s) 259, 322, 409
MroXI GAANNNNTTC 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 138
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 4 cut(s) 50, 203, 230, 333
NdeII GATC 1 cut(s) 300
NlaIII CATG 3 cut(s) 137, 188, 374
NmuCI GTSAC 3 cut(s) 125, 140, 247
PdmI GAANNNNTTC 1 cut(s) 179
PkrI GCNGC 3 cut(s) 52, 335, 399
PsrI GAACNNNNNNTAC 2 cut(s) 142, 174
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 3 cut(s) 51, 334, 398
Sau3AI GATC 1 cut(s) 300
SduI GDGCHC 1 cut(s) 345
SetI ASST 7 cut(s) 107, 142, 199, 276, 296, 420, 444
SfaNI GCATC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 2 cut(s) 175, 216
SsiI CCGC 1 cut(s) 233
SspMI CTAG 2 cut(s) 198, 227
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 414, 432
TasI AATT 2 cut(s) 175, 216
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 3 cut(s) 125, 140, 247
TseI GCWGC 3 cut(s) 50, 333, 397
Tsp45I GTSAC 3 cut(s) 125, 140, 247
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 2 cut(s) 41, 328
TspRI CASTG 1 cut(s) 350
VneI GTGCAC 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 198, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.