Rroxscaffold_5G00382570

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000362
Physical Location & Seq
Forward (+)
62416896 .. 62418007
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382570.1

Sequence Viewer

Length: 459 bp
ATGGCTCAAATAGCAAAAATGCAAGTTGAAGCTGAGATCAAAGCCAGTGCTGAAAAGTTCTACGAAATCTTTCGTAGCAGAGGGTACTTGTTGCCCAAGATCTGCCCTGACATGATAAAGGACCTGCGGGTACTCGAAGGGGATTGGGGAACTGTAGGCTCGGTCAAGCAGTGGACTTACGTTGCTGCAGGTAATTCTGAGATTGCAAAAGAGACGGTTGAAGCCATGGATGAAAAAGCCAAATCAATCACTTTCAAGACGGTGGATGGATCGCTCCTGAAAGTCTACAAGAATATGAAGGCCACGGTTCAGGTTACGGCAAAGGCTAGCGGATGCAGCTCGGTGAAATGGAGTATAGAATACGAGAAGCTGAACGAGGATTCTCCACCTCCCAATAAGTATCTGGACTTTGTTCTCATTCTCAATAAAAAGGTTGATGCCTACCTTCTCAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

152

Amino Acids

17.09

Weight (kDa)

8.39

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 152 6.2e-47 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 6 - 128 2.8e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 132, 179
AccI GTMKAC 1 cut(s) 285
AciI CCGC 2 cut(s) 127, 330
AclWI GGATC 1 cut(s) 277
AfaI GTAC 2 cut(s) 86, 132
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 3 cut(s) 29, 221, 256
AluBI AGCT 3 cut(s) 32, 339, 370
AluI AGCT 3 cut(s) 32, 339, 370
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 185, 336
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 355
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 172, 348
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 2 cut(s) 153, 186
BfuAI ACCTGC 2 cut(s) 132, 179
BglII AGATCT 1 cut(s) 99
BisI GCNGC 2 cut(s) 186, 337
BlsI GCNGC 2 cut(s) 187, 338
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmsI GCATC 2 cut(s) 323, 427
BmtI GCTAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 225, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 225, 303
BseGI GGATG 3 cut(s) 235, 271, 338
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 2 cut(s) 24, 189
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 172, 348
BshFI GGCC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 36, 99, 269
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 2 cut(s) 127, 330
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 2 cut(s) 25, 190
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 2 cut(s) 132, 179
BspOI GCTAGC 1 cut(s) 330
BspPI GGATC 1 cut(s) 277
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 225, 303
BssMI GATC 3 cut(s) 36, 99, 269
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 4 cut(s) 154, 217, 262, 307
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 33, 198
BstDSI CCRYGG 2 cut(s) 225, 303
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 3 cut(s) 235, 271, 338
BstKTI GATC 3 cut(s) 39, 102, 272
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 36, 99, 269
BstMWI GCNNNNNNNGC 2 cut(s) 11, 336
BstSFI CTRYAG 2 cut(s) 153, 186
BstV1I GCAGC 2 cut(s) 172, 348
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 1 cut(s) 302
BtgI CCRYGG 2 cut(s) 225, 303
BtsCI GGATG 3 cut(s) 235, 271, 338
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 2 cut(s) 52, 176
BveI ACCTGC 2 cut(s) 132, 179
Cac8I GCNNGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 85, 131
CviAII CATG 2 cut(s) 112, 226
CviQI GTAC 2 cut(s) 85, 131
DdeI CTNAG 2 cut(s) 33, 198
DpnI GATC 3 cut(s) 38, 101, 271
DpnII GATC 3 cut(s) 36, 99, 269
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 2 cut(s) 115, 229
FaiI YATR 4 cut(s) 113, 227, 296, 356
FatI CATG 2 cut(s) 111, 225
FauI CCCGC 1 cut(s) 120
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 186, 337
FokI GGATG 3 cut(s) 242, 278, 345
Fsp4HI GCNGC 2 cut(s) 186, 337
FspBI CTAG 1 cut(s) 327
GluI GCNGC 2 cut(s) 186, 337
HaeIII GGCC 1 cut(s) 302
Hin1II CATG 2 cut(s) 115, 229
HinfI GANTC 1 cut(s) 380
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 174, 286
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 3 cut(s) 256, 277, 404
Hpy8I GTNNAC 2 cut(s) 174, 286
HpyAV CCTTC 3 cut(s) 131, 292, 455
HpyCH4III ACNGT 4 cut(s) 154, 217, 262, 307
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 22, 188, 206, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 336
HpyF3I CTNAG 2 cut(s) 33, 198
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 115, 229
Kzo9I GATC 3 cut(s) 36, 99, 269
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 7 cut(s) 58, 120, 137, 174, 290, 296, 389
Lsp1109I GCAGC 2 cut(s) 172, 348
LweI GCATC 2 cut(s) 323, 427
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 38, 101, 271
MboI GATC 3 cut(s) 36, 99, 269
MflI RGATCY 1 cut(s) 99
MluCI AATT 1 cut(s) 193
MnlI CCTC 3 cut(s) 74, 370, 399
MroXI GAANNNNTTC 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 11, 336
NcoI CCATGG 1 cut(s) 225
NdeII GATC 3 cut(s) 36, 99, 269
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 2 cut(s) 115, 229
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 2 cut(s) 187, 338
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
PspPI GGNCC 1 cut(s) 121
PspPPI RGGWCCY 1 cut(s) 121
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 2 cut(s) 86, 132
RsaNI GTAC 2 cut(s) 85, 131
SatI GCNGC 2 cut(s) 186, 337
Sau3AI GATC 3 cut(s) 36, 99, 269
Sau96I GGNCC 1 cut(s) 121
SfaNI GCATC 2 cut(s) 323, 427
SfcI CTRYAG 2 cut(s) 153, 186
SinI GGWCC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 1 cut(s) 193
SsiI CCGC 2 cut(s) 127, 330
SspMI CTAG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 4 cut(s) 154, 217, 262, 307
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 135
TaqII GACCGA 1 cut(s) 151
TasI AATT 1 cut(s) 193
TfiI GAWTC 1 cut(s) 380
TscAI CASTG 2 cut(s) 52, 176
TseI GCWGC 2 cut(s) 185, 336
TspDTI ATGAA 2 cut(s) 246, 311
TspRI CASTG 2 cut(s) 52, 176
VpaK11BI GGWCC 1 cut(s) 121
XagI CCTNNNNNAGG 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.