Rmu_co8369709.1_g000001

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8369709.1
OG0000362
Physical Location & Seq
Forward (+)
1 .. 486
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8369709.1_g000001.1.cds

Sequence Viewer

Length: 248 bp
atgggaaagctaaagttgccaaggagttgattgaagccatagacgttgaaacgaactcgataactttgaaaataattgaaggagatcttttggagcattacaagagtttcaaggccaccatccaagccatcccaaaaggtgagggcagctctgtgcattggactttggagtatgaaaagttgcacgacgaagtttcagatccacacacattgctccagttggtagtagagctctactcgatgtcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

81

Amino Acids

9.08

Weight (kDa)

5.05

Isoelectric Point (pI)

21.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 193
AgsI TTSAA 5 cut(s) 34, 49, 69, 79, 111
AluBI AGCT 3 cut(s) 10, 149, 231
AluI AGCT 3 cut(s) 10, 149, 231
Alw21I GWGCWC 1 cut(s) 233
AlwI GGATC 1 cut(s) 193
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 151
BanII GRGCYC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 158
BccI CCATC 2 cut(s) 127, 136
BglII AGATCT 1 cut(s) 84
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BplI GAGNNNNNCTC 3 cut(s) 133, 165, 220
BpmI CTGGAG 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 119, 128
BseMI GCAATG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 233
BsnI GGCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 84, 198
BspANI GGCC 1 cut(s) 115
BspPI GGATC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 2 cut(s) 84, 198
BssT1I CCWWGG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 119, 128
BstKTI GATC 2 cut(s) 87, 201
BstMBI GATC 2 cut(s) 84, 198
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 84, 198
BstYI RGATCY 2 cut(s) 84, 198
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 2 cut(s) 119, 128
CspCI CAANNNNNGTGG 2 cut(s) 191, 226
CviJI RGCY 6 cut(s) 10, 37, 115, 127, 149, 231
CviKI_1 RGCY 6 cut(s) 10, 37, 115, 127, 149, 231
DpnI GATC 2 cut(s) 86, 200
DpnII GATC 2 cut(s) 84, 198
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 20
FaiI YATR 2 cut(s) 40, 173
FalI AAGNNNNNCTT 2 cut(s) 71, 103
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 2 cut(s) 106, 115
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 199
HaeIII GGCC 1 cut(s) 115
HphI GGTGA 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 198
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 156, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 44
Kzo9I GATC 2 cut(s) 84, 198
LmnI GCTCC 2 cut(s) 93, 218
LpnPI CCDG 1 cut(s) 229
Lsp1109I GCAGC 1 cut(s) 158
MaeII ACGT 1 cut(s) 44
MalI GATC 2 cut(s) 86, 200
MboI GATC 2 cut(s) 84, 198
MflI RGATCY 2 cut(s) 84, 198
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 74
MnlI CCTC 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 2 cut(s) 84, 198
PkrI GCNGC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 233
PsuI RGATCY 2 cut(s) 84, 198
SacI GAGCTC 1 cut(s) 233
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 2 cut(s) 84, 198
SduI GDGCHC 1 cut(s) 233
SetI ASST 5 cut(s) 12, 47, 141, 151, 233
SgeI CNNG 7 cut(s) 33, 69, 114, 123, 136, 196, 228
Sse9I AATT 1 cut(s) 74
SstI GAGCTC 1 cut(s) 233
StyI CCWWGG 1 cut(s) 20
TaiI ACGT 1 cut(s) 47
TaqI TCGA 2 cut(s) 58, 238
TasI AATT 1 cut(s) 74
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.