AT1G70860

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000362
Physical Location & Seq
Reverse (-)
26718070 .. 26719211
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70860.1

Sequence Viewer

Length: 198 bp
ATGGCGGAGGAAGTATCTACTTTGGTTGGGATCCTTGAGACAACCGTGACCCCTAAGGAAGGAGAACCTGGAAGTGTTGCACATTGGCACTTTGAGTATGAGAAAATCAACGAGGAGGTGGCTCACCCTGAAACTCTCCTCCAGTTTGCAATCAAAGTTTCCAAAGAGATCGATGAACATCTCTTTTCAGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

65

Amino Acids

7.38

Weight (kDa)

4.54

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 13 - 63 1.9e-13 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 25, 38
AfiI CCNNNNNNNGG 1 cut(s) 59
AjnI CCWGG 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 25, 38
AsuHPI GGTGA 1 cut(s) 116
AxyI CCTNAGG 1 cut(s) 54
BamHI GGATCC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 56
Bsa29I ATCGAT 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 142
Bse21I CCTNAGG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 1 cut(s) 69
BseCI ATCGAT 1 cut(s) 171
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 128, 128
BshVI ATCGAT 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 30, 168
BspACI CCGC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 25, 38
BsrI ACTGG 1 cut(s) 142
BssMI GATC 2 cut(s) 30, 168
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 54
BstENI CCTNNNNNAGG 1 cut(s) 57
BstKTI GATC 2 cut(s) 33, 171
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 30, 168
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 54
BsuTUI ATCGAT 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 171
CviJI RGCY 1 cut(s) 122
CviKI_1 RGCY 1 cut(s) 122
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 32, 170
DpnII GATC 2 cut(s) 30, 168
EciI GGCGGA 1 cut(s) 20
Eco81I CCTNAGG 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 67
FaiI YATR 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 125
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 80, 149
HpyF3I CTNAG 1 cut(s) 54
Kzo9I GATC 2 cut(s) 30, 168
LpnPI CCDG 4 cut(s) 54, 81, 141, 155
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 32, 170
MboI GATC 2 cut(s) 30, 168
MflI RGATCY 1 cut(s) 30
MnlI CCTC 4 cut(s) 106, 109, 149, 184
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
NdeII GATC 2 cut(s) 30, 168
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 30
Sau3AI GATC 2 cut(s) 30, 168
ScrFI CCNGG 1 cut(s) 69
SetI ASST 2 cut(s) 70, 120
SgeI CNNG 7 cut(s) 47, 58, 80, 81, 124, 140, 154
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 171
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.