Rh4AG043500

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000362
Physical Location & Seq
Reverse (-)
9049630 .. 9172434
122805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG043500.1

Sequence Viewer

Length: 483 bp
ATGTCGTCAGCTAGGTTCGGTAAGCTGGAGGTGGATATTGAAATCAGGGCTCCTGCAGAAAGATTCTTTGAAGTCCATACGCGGAAAACATACATGTTATCAAATACCAGTCCTGATAAAGTTGTGAGTTGTGAATTACTTGAAGGTGACTGGGGAAAAGAAGGGTCTGTCATCTCCTGGAATTATGTTCTAGATGGGAATGCTATAGCTGGCAAGGAGTTGCTTGAAGCCGTAGACATCGAAAGAAATTCGGTAACTTATAGAGTTATCGATGGATACTTGCTGCAGTATTACAAGAGCTTCAAGAGAAGTTGTGAAGCCACCCCAAAAGGAAAAGGAGAAGAAGAGGGAACCCGTGTTCACTGGACTCTGGAATATGAGAAGCTGCATGACAAAGTTCCGGAGCCACATACCATGCTCCAGTTCATACTGGATCTCGTCAAAGATTTTGATGCTCACCCTAGCAGCCAAGAACATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

160

Amino Acids

18.38

Weight (kDa)

5.26

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 7 - 153 6.7e-41 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 8 - 133 7.2e-07 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 82
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 441
AcsI RAATTY 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 5 cut(s) 41, 71, 143, 227, 304
AjnI CCWGG 1 cut(s) 176
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 5 cut(s) 11, 25, 209, 300, 385
AluI AGCT 5 cut(s) 11, 25, 209, 300, 385
AlwI GGATC 1 cut(s) 441
Aor13HI TCCGGA 1 cut(s) 400
ApeKI GCWGC 3 cut(s) 283, 385, 465
ApoI RAATTY 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 158, 449
BanII GRGCYC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 270, 372, 477
BccI CCATC 2 cut(s) 188, 266
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 178
BciVI GTATCC 1 cut(s) 269
BfaI CTAG 3 cut(s) 12, 191, 462
BfmI CTRYAG 3 cut(s) 54, 204, 284
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 3 cut(s) 284, 386, 466
BlsI GCNGC 3 cut(s) 285, 387, 467
Bme1390I CCNGG 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 51, 352, 405
BmrFI CCNGG 1 cut(s) 178
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 442
BmuI ACTGGG 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 47, 404
Bsa29I ATCGAT 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 400
Bse1I ACTGG 5 cut(s) 108, 155, 368, 421, 435
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 1 cut(s) 178
BseCI ATCGAT 1 cut(s) 270
BseNI ACTGG 5 cut(s) 108, 155, 368, 421, 435
BseXI GCAGC 3 cut(s) 270, 372, 477
Bsh1236I CGCG 1 cut(s) 82
BshVI ATCGAT 1 cut(s) 270
BsiSI CCGG 1 cut(s) 401
BsmI GAATGC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 52
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 1 cut(s) 82
BspDI ATCGAT 1 cut(s) 270
BspEI TCCGGA 1 cut(s) 400
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 3 cut(s) 51, 352, 405
BspMAI CTGCAG 2 cut(s) 58, 288
BspPI GGATC 1 cut(s) 441
BsrI ACTGG 5 cut(s) 108, 155, 368, 421, 435
BssMI GATC 1 cut(s) 433
Bst2UI CCWGG 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 211
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 1 cut(s) 436
BstMBI GATC 1 cut(s) 433
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 3 cut(s) 54, 204, 284
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 270, 372, 477
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
Bsu15I ATCGAT 1 cut(s) 270
BsuI GTATCC 1 cut(s) 269
BsuTUI ATCGAT 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 211
ClaI ATCGAT 1 cut(s) 270
CviAII CATG 3 cut(s) 94, 389, 415
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 3 cut(s) 97, 392, 418
FatI CATG 3 cut(s) 93, 388, 414
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 284, 386, 466
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 284, 386, 466
FspBI CTAG 3 cut(s) 12, 191, 462
GluI GCNGC 3 cut(s) 284, 386, 466
GsuI CTGGAG 2 cut(s) 47, 404
HapII CCGG 1 cut(s) 401
Hin1II CATG 3 cut(s) 97, 392, 418
HinfI GANTC 2 cut(s) 63, 367
HpaII CCGG 1 cut(s) 401
HphI GGTGA 2 cut(s) 158, 449
Hpy166II GTNNAC 2 cut(s) 235, 361
Hpy188III TCNNGA 5 cut(s) 113, 191, 304, 371, 401
Hpy8I GTNNAC 2 cut(s) 235, 361
HpyAV CCTTC 2 cut(s) 137, 155
HpyCH4V TGCA 3 cut(s) 56, 286, 388
Hsp92II CATG 3 cut(s) 97, 392, 418
Kpn2I TCCGGA 1 cut(s) 400
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 3 cut(s) 55, 403, 423
Lsp1109I GCAGC 3 cut(s) 270, 372, 477
LweI GCATC 1 cut(s) 442
MaeI CTAG 3 cut(s) 12, 191, 462
MaeIII GTNAC 2 cut(s) 146, 253
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 2 cut(s) 353, 356
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 3 cut(s) 134, 181, 247
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 2 cut(s) 22, 340
MroI TCCGGA 1 cut(s) 400
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 178
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 1 cut(s) 82
NdeII GATC 1 cut(s) 433
NlaIII CATG 3 cut(s) 97, 392, 418
NlaIV GGNNCC 3 cut(s) 51, 352, 405
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 97
PciI ACATGT 1 cut(s) 93
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 176
PkrI GCNGC 3 cut(s) 285, 387, 467
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PscI ACATGT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 51, 352, 405
PstI CTGCAG 2 cut(s) 58, 288
PsuI RGATCY 1 cut(s) 433
SatI GCNGC 3 cut(s) 284, 386, 466
Sau3AI GATC 1 cut(s) 433
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 52
SetI ASST 8 cut(s) 13, 17, 27, 33, 148, 211, 302, 387
SfaNI GCATC 1 cut(s) 442
SfcI CTRYAG 3 cut(s) 54, 204, 284
Sse9I AATT 3 cut(s) 134, 181, 247
SsiI CCGC 1 cut(s) 82
SspMI CTAG 3 cut(s) 12, 191, 462
StyD4I CCNGG 1 cut(s) 176
TaqI TCGA 2 cut(s) 240, 270
TasI AATT 3 cut(s) 134, 181, 247
TfiI GAWTC 1 cut(s) 63
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 3 cut(s) 283, 385, 465
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 415
TspRI CASTG 1 cut(s) 368
XapI RAATTY 1 cut(s) 247
XbaI TCTAGA 1 cut(s) 190
XceI RCATGY 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 3 cut(s) 12, 191, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.