FvH4_4g32750

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000362
Physical Location & Seq
Forward (+)
31281034 .. 31282251
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32750.t1

Sequence Viewer

Length: 462 bp
ATGTCTTCTAAGCTAGAAAAGTTGGAGACGGATGTTGAAATCAAAGCCTCTCCTGTCCAGTTCCACGAATACTTTACACGCAGACCACACCATATATCCAATGTCAGCTCTGACAAAATTCAGGGTTGTGATCTCCACGAAGGTGACTGGGGAAACGTCGGTTCTGTCATCTACTGGAATTATGTTCATGATGGGAAACCTAGAGTTTGCAAGGAGTTGATTGAAGCCATAGACGACGAAACGAACTCGATAACTTTGAAAATAATCGAAGGAGATCTTCTGGAGCATTACAAGAGTTTCAAGGCCACCATTCAAGCCAGCCCAAAAGGTGAGGGCAGCTCTGTGCATTGGACTTTCGAGTATGAAAAGCTGCACGACGAAGTTTCGGATCCGCACACATTGCTGCAGTTGGTAGCTGAGCTCTCCAAAGATATTGATAATCACCTAATCACCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

154

Amino Acids

17.44

Weight (kDa)

5.16

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 6 - 151 2e-54 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 7 - 123 2e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 392
AclWI GGATC 2 cut(s) 383, 396
AcsI RAATTY 1 cut(s) 117
AgsI TTSAA 5 cut(s) 38, 224, 259, 301, 314
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 6 cut(s) 13, 108, 339, 370, 416, 421
AluI AGCT 6 cut(s) 13, 108, 339, 370, 416, 421
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 383, 396
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 3 cut(s) 336, 370, 403
ApoI RAATTY 1 cut(s) 117
AsuHPI GGTGA 4 cut(s) 155, 341, 434, 442
BamHI GGATCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 348, 357, 390
BccI CCATC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 14, 201
BfmI CTRYAG 1 cut(s) 404
BglII AGATCT 1 cut(s) 274
BisI GCNGC 3 cut(s) 337, 371, 404
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 3 cut(s) 338, 372, 405
BmiI GGNNCC 1 cut(s) 390
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpmI CTGGAG 1 cut(s) 302
Bpu1102I GCTNAGC 1 cut(s) 417
Bse1I ACTGG 3 cut(s) 58, 152, 179
Bse3DI GCAATG 1 cut(s) 398
BseGI GGATG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 3 cut(s) 58, 152, 179
BseXI GCAGC 3 cut(s) 348, 357, 390
BsgI GTGCAG 1 cut(s) 356
BshFI GGCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 20
BsmBI CGTCTC 1 cut(s) 20
BsnI GGCC 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 3 cut(s) 130, 274, 388
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 1 cut(s) 392
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 409
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 408
BspPI GGATC 2 cut(s) 383, 396
BsrDI GCAATG 1 cut(s) 398
BsrI ACTGG 3 cut(s) 58, 152, 179
BssMI GATC 3 cut(s) 130, 274, 388
BstAPI GCANNNNNTGC 1 cut(s) 400
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 2 cut(s) 9, 417
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 3 cut(s) 133, 277, 391
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 3 cut(s) 130, 274, 388
BstMWI GCNNNNNNNGC 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 404
BstV1I GCAGC 3 cut(s) 348, 357, 390
BstX2I RGATCY 2 cut(s) 274, 388
BstYI RGATCY 2 cut(s) 274, 388
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 319
CciI TCATGA 1 cut(s) 187
CviAII CATG 1 cut(s) 188
DdeI CTNAG 2 cut(s) 9, 417
DpnI GATC 3 cut(s) 132, 276, 390
DpnII GATC 3 cut(s) 130, 274, 388
Ecl136II GAGCTC 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 423
Eco53kI GAGCTC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 1 cut(s) 191
FaiI YATR 7 cut(s) 93, 95, 183, 189, 230, 363, 460
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 337, 371, 404
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 3 cut(s) 337, 371, 404
FspBI CTAG 2 cut(s) 14, 201
GluI GCNGC 3 cut(s) 337, 371, 404
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 1 cut(s) 305
Hin1II CATG 1 cut(s) 191
HphI GGTGA 4 cut(s) 155, 341, 434, 442
Hpy188I TCNGA 2 cut(s) 112, 388
Hpy188III TCNNGA 2 cut(s) 188, 281
Hpy99I CGWCG 3 cut(s) 161, 239, 380
HpyAV CCTTC 2 cut(s) 134, 263
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 4 cut(s) 210, 346, 373, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 400
HpyF3I CTNAG 2 cut(s) 9, 417
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 1 cut(s) 191
Kzo9I GATC 3 cut(s) 130, 274, 388
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 7 cut(s) 66, 71, 107, 133, 160, 266, 331
Lsp1109I GCAGC 3 cut(s) 348, 357, 390
MaeI CTAG 2 cut(s) 14, 201
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 132, 276, 390
MboI GATC 3 cut(s) 130, 274, 388
MboII GAAGA 1 cut(s) 269
MflI RGATCY 2 cut(s) 274, 388
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 2 cut(s) 117, 178
MnlI CCTC 2 cut(s) 58, 325
MslI CAYNNNNRTG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 400
NdeII GATC 3 cut(s) 130, 274, 388
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 143
OliI CACNNNNGTG 1 cut(s) 141
PagI TCATGA 1 cut(s) 187
PkrI GCNGC 3 cut(s) 338, 372, 405
Psp124BI GAGCTC 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 390
PstI CTGCAG 1 cut(s) 408
PsuI RGATCY 2 cut(s) 274, 388
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 423
SatI GCNGC 3 cut(s) 337, 371, 404
Sau3AI GATC 3 cut(s) 130, 274, 388
SduI GDGCHC 1 cut(s) 423
SfcI CTRYAG 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 2 cut(s) 117, 178
SsiI CCGC 1 cut(s) 392
SspMI CTAG 2 cut(s) 14, 201
SstI GAGCTC 1 cut(s) 423
TaiI ACGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 248, 267, 357
TasI AATT 2 cut(s) 117, 178
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 3 cut(s) 336, 370, 403
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 176, 378
TspGWI ACGGA 1 cut(s) 44
XapI RAATTY 1 cut(s) 117
XspI CTAG 2 cut(s) 14, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.