Rmu_sc0000353.1_g000003

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000353.1
OG0000362
Physical Location & Seq
Forward (+)
9948 .. 10674
727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000353.1_g000003.1.cds

Sequence Viewer

Length: 441 bp
atgcaagttgaagctgagatcaaagccaatgctgaaaagttctacgaaatctttcgtagcaaagggtacttgttgcccaagatttgccctgacatgataaaggacctgcgggtactcgaaggggattggggaactgtaggctcggtcaagcagtggacttacgttgctgcaggtaattctgagattgcaaaagagacggttgaagccatggatgaaaaagccaaatcaatcactttcaagacggtggatggatcgctcctgaaagtctacaagaatatgaaggctacggttcaggttacagcaaaggctggcggatgcagctcggtgaaatggagtatagaatatgagaagctgaacgaggattctccacctcccaataagtatctggactttgttctcattctcaataaaaaggttgatgcctaccttctcaagaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

146

Amino Acids

16.42

Weight (kDa)

8.7

Isoelectric Point (pI)

27.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 114, 161
AccI GTMKAC 1 cut(s) 267
AciI CCGC 2 cut(s) 109, 312
AclWI GGATC 1 cut(s) 259
AfaI GTAC 2 cut(s) 68, 114
AgsI TTSAA 3 cut(s) 11, 203, 238
AluBI AGCT 3 cut(s) 14, 321, 352
AluI AGCT 3 cut(s) 14, 321, 352
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 167, 318
Asp700I GAANNNNTTC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 154, 330
BccI CCATC 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 188
BfmI CTRYAG 2 cut(s) 135, 168
BfuAI ACCTGC 2 cut(s) 114, 161
BisI GCNGC 2 cut(s) 168, 319
BlsI GCNGC 2 cut(s) 169, 320
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmsI GCATC 2 cut(s) 305, 409
BpuEI CTTGAG 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 3 cut(s) 217, 253, 320
BseMII CTCAG 2 cut(s) 6, 171
BseXI GCAGC 2 cut(s) 154, 330
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 18, 251
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 2 cut(s) 109, 312
BspCNI CTCAG 2 cut(s) 7, 172
BspMAI CTGCAG 1 cut(s) 172
BspMI ACCTGC 2 cut(s) 114, 161
BspPI GGATC 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 18, 251
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 4 cut(s) 136, 199, 244, 289
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 15, 180
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 3 cut(s) 217, 253, 320
BstKTI GATC 2 cut(s) 21, 254
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 18, 251
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstSFI CTRYAG 2 cut(s) 135, 168
BstV1I GCAGC 2 cut(s) 154, 330
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 3 cut(s) 217, 253, 320
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 158
BveI ACCTGC 2 cut(s) 114, 161
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 67, 113
CviAII CATG 2 cut(s) 94, 208
CviJI RGCY 9 cut(s) 14, 26, 141, 206, 221, 284, 308, 321, 352
CviKI_1 RGCY 9 cut(s) 14, 26, 141, 206, 221, 284, 308, 321, 352
CviQI GTAC 2 cut(s) 67, 113
DdeI CTNAG 2 cut(s) 15, 180
DpnI GATC 2 cut(s) 20, 253
DpnII GATC 2 cut(s) 18, 251
EciI GGCGGA 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 2 cut(s) 97, 211
FaiI YATR 5 cut(s) 95, 209, 278, 338, 345
FatI CATG 2 cut(s) 93, 207
FauI CCCGC 1 cut(s) 102
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 168, 319
FokI GGATG 3 cut(s) 224, 260, 327
Fsp4HI GCNGC 2 cut(s) 168, 319
GluI GCNGC 2 cut(s) 168, 319
Hin1II CATG 2 cut(s) 97, 211
HinfI GANTC 1 cut(s) 362
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 156, 268
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 4 cut(s) 238, 259, 386, 433
Hpy8I GTNNAC 2 cut(s) 156, 268
HpyAV CCTTC 3 cut(s) 113, 274, 437
HpyCH4III ACNGT 4 cut(s) 136, 199, 244, 289
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 4 cut(s) 4, 170, 188, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 2 cut(s) 15, 180
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 97, 211
Kzo9I GATC 2 cut(s) 18, 251
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 7 cut(s) 102, 119, 156, 272, 278, 294, 371
Lsp1109I GCAGC 2 cut(s) 154, 330
LweI GCATC 2 cut(s) 305, 409
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 20, 253
MboI GATC 2 cut(s) 18, 251
MluCI AATT 1 cut(s) 175
MnlI CCTC 2 cut(s) 352, 381
MroXI GAANNNNTTC 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 318
NcoI CCATGG 1 cut(s) 207
NdeII GATC 2 cut(s) 18, 251
NlaIII CATG 2 cut(s) 97, 211
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 2 cut(s) 169, 320
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PstI CTGCAG 1 cut(s) 172
RsaI GTAC 2 cut(s) 68, 114
RsaNI GTAC 2 cut(s) 67, 113
SatI GCNGC 2 cut(s) 168, 319
Sau3AI GATC 2 cut(s) 18, 251
Sau96I GGNCC 1 cut(s) 103
SfaNI GCATC 2 cut(s) 305, 409
SfcI CTRYAG 2 cut(s) 135, 168
SinI GGWCC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 1 cut(s) 175
SsiI CCGC 2 cut(s) 109, 312
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 4 cut(s) 136, 199, 244, 289
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 117
TaqII GACCGA 1 cut(s) 133
TasI AATT 1 cut(s) 175
TfiI GAWTC 1 cut(s) 362
TscAI CASTG 1 cut(s) 158
TseI GCWGC 2 cut(s) 167, 318
TspDTI ATGAA 2 cut(s) 228, 293
TspRI CASTG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.