Rh4CG416000

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000362
Physical Location & Seq
Forward (+)
66058420 .. 66071450
13031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG416000.1

Sequence Viewer

Length: 348 bp
ATGGCTCAAATAGCAAAAATGCAAGTTGAAGCTGAGATCAAAGCCAGTGCTGAAAAGTTCTACGAAATCTTTCGTAGCAAAGGGTACTTGTTGCCCAAGATCTGCCCTGACATGATAAAGGACCTGCGGGTACTCGAAGGGGATTGGGGAACTGTAGGCTCGGTCAAGCAGTGGACTTACGTTGCTGCAGATCGAAAACCACAAGCCAAGGAGCAACGAATTGTCGGCGGACTCTTTCACCATCTCCTTCCACGTTTCTCCATTCGAATCTCCGGTCTCCGAGGAGCTGCTGTGTCGCCGGAGCTTCAGAACTCTGGATCTAGAACGATTTGTGTTACGAGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

115

Amino Acids

12.88

Weight (kDa)

9.74

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 73 3.5e-17 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 132
AciI CCGC 2 cut(s) 127, 228
AclWI GGATC 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 2 cut(s) 86, 132
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 3 cut(s) 32, 287, 304
AluI AGCT 3 cut(s) 32, 287, 304
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 185, 287
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 172, 274
BccI CCATC 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 2 cut(s) 153, 186
BfuAI ACCTGC 1 cut(s) 132
BglII AGATCT 1 cut(s) 99
BisI GCNGC 2 cut(s) 186, 288
BlsI GCNGC 2 cut(s) 187, 289
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 207, 280
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bse118I RCCGGY 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 207, 280
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 172, 274
BsiSI CCGG 3 cut(s) 273, 299, 343
BsmAI GTCTC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 265
Bsp143I GATC 4 cut(s) 36, 99, 190, 317
BspACI CCGC 2 cut(s) 127, 228
BspCNI CTCAG 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 132
BspPI GGATC 1 cut(s) 325
BspT104I TTCGAA 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 342
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 342
BssECI CCNNGG 2 cut(s) 207, 280
BssMI GATC 4 cut(s) 36, 99, 190, 317
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 154
BstBI TTCGAA 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 33
BstKTI GATC 4 cut(s) 39, 102, 193, 320
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 4 cut(s) 36, 99, 190, 317
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 2 cut(s) 153, 186
BstV1I GCAGC 2 cut(s) 172, 274
BstX2I RGATCY 2 cut(s) 99, 317
BstYI RGATCY 2 cut(s) 99, 317
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 2 cut(s) 52, 176
BveI ACCTGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 85, 131
CviAII CATG 1 cut(s) 112
CviJI RGCY 8 cut(s) 5, 32, 44, 159, 206, 287, 304, 342
CviKI_1 RGCY 8 cut(s) 5, 32, 44, 159, 206, 287, 304, 342
CviQI GTAC 2 cut(s) 85, 131
DdeI CTNAG 1 cut(s) 33
DpnI GATC 4 cut(s) 38, 101, 192, 319
DpnII GATC 4 cut(s) 36, 99, 190, 317
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FatI CATG 1 cut(s) 111
FauI CCCGC 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 186, 288
Fsp4HI GCNGC 2 cut(s) 186, 288
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 186, 288
HapII CCGG 3 cut(s) 273, 299, 343
Hin1II CATG 1 cut(s) 115
HinfI GANTC 2 cut(s) 231, 267
HpaII CCGG 3 cut(s) 273, 299, 343
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 2 cut(s) 281, 309
Hpy188III TCNNGA 2 cut(s) 315, 321
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 131, 257
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 2 cut(s) 180, 253
HpyCH4V TGCA 2 cut(s) 22, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 2 cut(s) 180, 253
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 4 cut(s) 36, 99, 190, 317
LmnI GCTCC 3 cut(s) 211, 284, 301
LpnPI CCDG 6 cut(s) 58, 120, 137, 286, 300, 312
Lsp1109I GCAGC 2 cut(s) 172, 274
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 180, 253
MaeIII GTNAC 1 cut(s) 334
MalI GATC 4 cut(s) 38, 101, 192, 319
MboI GATC 4 cut(s) 36, 99, 190, 317
MflI RGATCY 2 cut(s) 99, 317
MluCI AATT 1 cut(s) 219
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 69
MspI CCGG 3 cut(s) 273, 299, 343
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 4 cut(s) 36, 99, 190, 317
NlaIII CATG 1 cut(s) 115
NspV TTCGAA 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 2 cut(s) 187, 289
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
PspPI GGNCC 1 cut(s) 121
PspPPI RGGWCCY 1 cut(s) 121
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 2 cut(s) 99, 317
RsaI GTAC 2 cut(s) 86, 132
RsaNI GTAC 2 cut(s) 85, 131
SatI GCNGC 2 cut(s) 186, 288
Sau3AI GATC 4 cut(s) 36, 99, 190, 317
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 225
SetI ASST 6 cut(s) 34, 126, 183, 256, 289, 306
SfcI CTRYAG 2 cut(s) 153, 186
SfuI TTCGAA 1 cut(s) 265
SinI GGWCC 1 cut(s) 121
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 127, 228
SspMI CTAG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 2 cut(s) 183, 256
TaqI TCGA 3 cut(s) 135, 193, 265
TaqII GACCGA 1 cut(s) 151
TasI AATT 1 cut(s) 219
TfiI GAWTC 1 cut(s) 267
TscAI CASTG 2 cut(s) 52, 176
TseI GCWGC 2 cut(s) 185, 287
TspRI CASTG 2 cut(s) 52, 176
VpaK11BI GGWCC 1 cut(s) 121
XbaI TCTAGA 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.