Rorug01G0046500

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000362
Physical Location & Seq
Reverse (-)
7799688 .. 7800425
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0046500.1

Sequence Viewer

Length: 702 bp
ATGCCTATATCTTCCTCCACAATCTCCAATCCCAAAACCATTTCATCAACTCCAATATTACTTGTCACCACCATTCTTCAATTCTCGCATTCTCTCAATCCTTCACCAATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGTAACAAAGCAGCCGAGAGTAGTGCTAACATGCTTTGTAGGCGGAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTTAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTTTAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCCAGATCGAGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTTTATTAACTTCGAATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGAAGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGCTCCCAATGCATGGTGAGGACATTTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

233

Amino Acids

25.43

Weight (kDa)

8.42

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 569
AciI CCGC 4 cut(s) 190, 337, 618, 697
AclWI GGATC 3 cut(s) 296, 435, 532
AcoI YGGCCR 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 2 cut(s) 311, 409
AfiI CCNNNNNNNGG 2 cut(s) 322, 569
AflII CTTAAG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 80, 545
AleI CACNNNNGTG 1 cut(s) 627
AluBI AGCT 5 cut(s) 238, 301, 476, 652, 677
AluI AGCT 5 cut(s) 238, 301, 476, 652, 677
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 3 cut(s) 296, 435, 532
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 549
Asp718I GGTACC 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 261, 348
AsuHPI GGTGA 4 cut(s) 58, 96, 407, 584
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 327
AvaII GGWCC 2 cut(s) 261, 348
AxyI CCTNAGG 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 372
BaeI ACNNNNGTAYC 2 cut(s) 391, 424
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 654
BbsI GAAGAC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 134, 602
BceAI ACGGC 1 cut(s) 328
BcgI CGANNNNNNTGC 4 cut(s) 152, 186, 434, 468
BcoDI GTCTC 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 230
BisI GCNGC 2 cut(s) 159, 697
BlpI GCTNAGC 1 cut(s) 653
BlsI GCNGC 2 cut(s) 160, 698
Bme18I GGWCC 2 cut(s) 261, 348
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 261, 348
BmiI GGNNCC 4 cut(s) 114, 263, 409, 695
BmsI GCATC 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 602
BpmI CTGGAG 1 cut(s) 281
Bpu1102I GCTNAGC 1 cut(s) 653
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 668
BsaBI GATNNNNATC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 569
Bse21I CCTNAGG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 145, 364
BseJI GATNNNNATC 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 322, 569
BseMII CTCAG 2 cut(s) 414, 667
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 123
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 654
BsiHKCI CYCGRG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 322, 569
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 327
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 372, 654
Bsp143I GATC 6 cut(s) 214, 288, 318, 380, 427, 524
Bsp1720I GCTNAGC 1 cut(s) 653
BspACI CCGC 4 cut(s) 190, 337, 618, 697
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 415, 666
BspLI GGNNCC 4 cut(s) 114, 263, 409, 695
BspPI GGATC 3 cut(s) 296, 435, 532
BspT104I TTCGAA 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 407
BspTI CTTAAG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 6 cut(s) 214, 288, 318, 380, 427, 524
Bst4CI ACNGT 1 cut(s) 626
Bst6I CTCTTC 1 cut(s) 338
BstAFI CTTAAG 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 444
BstDEI CTNAG 2 cut(s) 423, 653
BstF5I GGATG 2 cut(s) 145, 364
BstKTI GATC 6 cut(s) 217, 291, 321, 383, 430, 527
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 6 cut(s) 214, 288, 318, 380, 427, 524
BstMWI GCNNNNNNNGC 4 cut(s) 187, 473, 565, 663
BstNSI RCATGY 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 2 cut(s) 288, 524
BstYI RGATCY 2 cut(s) 288, 524
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 2 cut(s) 145, 364
Cfr13I GGNCC 2 cut(s) 261, 348
Csp6I GTAC 2 cut(s) 310, 408
CviAII CATG 6 cut(s) 178, 365, 373, 535, 569, 592
CviQI GTAC 2 cut(s) 310, 408
DdeI CTNAG 2 cut(s) 423, 653
DpnI GATC 6 cut(s) 216, 290, 320, 382, 429, 526
DpnII GATC 6 cut(s) 214, 288, 318, 380, 427, 524
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
EciI GGCGGA 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 654
Eco47I GGWCC 2 cut(s) 261, 348
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 456
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 6 cut(s) 181, 368, 376, 538, 572, 595
FaqI GGGAC 1 cut(s) 247
FatI CATG 6 cut(s) 177, 364, 372, 534, 568, 591
Fnu4HI GCNGC 2 cut(s) 159, 697
FokI GGATG 2 cut(s) 152, 371
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 2 cut(s) 159, 697
GluI GCNGC 2 cut(s) 159, 697
GsaI CCCAGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 315
Hin1II CATG 6 cut(s) 181, 368, 376, 538, 572, 595
HinfI GANTC 4 cut(s) 202, 225, 280, 446
HphI GGTGA 4 cut(s) 58, 96, 407, 584
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 4 cut(s) 219, 285, 358, 607
Hpy188III TCNNGA 2 cut(s) 329, 691
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 3 cut(s) 111, 496, 560
HpyCH4III ACNGT 1 cut(s) 626
HpyCH4V TGCA 3 cut(s) 376, 455, 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 473, 565, 663
HpyF3I CTNAG 2 cut(s) 423, 653
Hsp92II CATG 6 cut(s) 181, 368, 376, 538, 572, 595
KpnI GGTACC 1 cut(s) 411
Kzo9I GATC 6 cut(s) 214, 288, 318, 380, 427, 524
LmnI GCTCC 3 cut(s) 235, 564, 693
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 464
MaeIII GTNAC 4 cut(s) 64, 149, 587, 620
MalI GATC 6 cut(s) 216, 290, 320, 382, 429, 526
MboI GATC 6 cut(s) 214, 288, 318, 380, 427, 524
MboII GAAGA 7 cut(s) 3, 68, 352, 355, 441, 462, 607
MfeI CAATTG 1 cut(s) 412
MflI RGATCY 2 cut(s) 288, 524
MhlI GDGCHC 2 cut(s) 372, 654
MluCI AATT 2 cut(s) 80, 412
Mph1103I ATGCAT 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 3 cut(s) 231, 438, 492
MslI CAYNNNNRTG 1 cut(s) 627
MspA1I CMGCKG 3 cut(s) 301, 476, 699
MspCI CTTAAG 1 cut(s) 230
MunI CAATTG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 88
MwoI GCNNNNNNNGC 4 cut(s) 187, 473, 565, 663
NdeII GATC 6 cut(s) 214, 288, 318, 380, 427, 524
NlaIII CATG 6 cut(s) 181, 368, 376, 538, 572, 595
NlaIV GGNNCC 4 cut(s) 114, 263, 409, 695
NmeAIII GCCGAG 1 cut(s) 187
NmuCI GTSAC 2 cut(s) 64, 620
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 1 cut(s) 181
NspV TTCGAA 1 cut(s) 444
OliI CACNNNNGTG 1 cut(s) 627
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PctI GAATGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 4 cut(s) 202, 225, 280, 446
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 2 cut(s) 160, 698
PpuMI RGGWCCY 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 654
Psp5II RGGWCCY 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 123
PspN4I GGNNCC 4 cut(s) 114, 263, 409, 695
PspPI GGNCC 2 cut(s) 261, 348
PspPPI RGGWCCY 1 cut(s) 261
PsuI RGATCY 2 cut(s) 288, 524
PvuII CAGCTG 2 cut(s) 301, 476
RsaI GTAC 2 cut(s) 311, 409
RsaNI GTAC 2 cut(s) 310, 408
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 654
SaqAI TTAA 3 cut(s) 231, 438, 492
SatI GCNGC 2 cut(s) 159, 697
Sau3AI GATC 6 cut(s) 214, 288, 318, 380, 427, 524
Sau96I GGNCC 2 cut(s) 261, 348
SduI GDGCHC 2 cut(s) 372, 654
SfaNI GCATC 1 cut(s) 464
SfcI CTRYAG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 2 cut(s) 261, 348
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 230, 647
SmoI CTYRAG 2 cut(s) 230, 647
Sse9I AATT 2 cut(s) 80, 412
SsiI CCGC 4 cut(s) 190, 337, 618, 697
SspI AATATT 1 cut(s) 57
SstI GAGCTC 1 cut(s) 654
TaaI ACNGT 1 cut(s) 626
TaqI TCGA 2 cut(s) 321, 444
TasI AATT 2 cut(s) 80, 412
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 4 cut(s) 202, 225, 280, 446
Tru1I TTAA 3 cut(s) 231, 438, 492
Tru9I TTAA 3 cut(s) 231, 438, 492
TseFI GTSAC 2 cut(s) 64, 620
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 2 cut(s) 64, 620
TspDTI ATGAA 4 cut(s) 33, 353, 545, 608
Van91I CCANNNNNTGG 1 cut(s) 569
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 261, 348
XceI RCATGY 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.