Rw1G005260

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000362
Physical Location & Seq
Reverse (-)
10190272 .. 10190854
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005260.1

Sequence Viewer

Length: 393 bp
ATGTTCACCCACAAACCACACCACATTTCCAATATCAGCTCCAACCACATTCAAGGCGTTGACTTACATGAAGGAGACTGGGGAACAGTCGGTGCTATCGTCTACTGGAATTACTTCCATGATGGGAAAGCTAGAGTTGCCAAGGAAAGAATTGAGGCCATAGACGCGGAAAAAAACTTGGTGACTTTCAGAGTAATTGAGGGAGACCTTATGGAGCATTACAAGAGCTTCTTGTTCACCATTCAAGCCACTCCGAAAGGCGAGGGCTGCTCCGTGCACTGGACTCTGGAATATGAGAAGCATCACGGTGATATTACCGACCCGCATACGCTGCTCCAGATTGCAGTCGAGGTTTCCAACGACATCGATGCTCACCTTACTGCCCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

130

Amino Acids

14.74

Weight (kDa)

5.64

Isoelectric Point (pI)

24.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 128 3.4e-46 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 167
AciI CCGC 2 cut(s) 167, 323
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 2 cut(s) 53, 245
AluBI AGCT 3 cut(s) 39, 131, 228
AluI AGCT 3 cut(s) 39, 131, 228
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 2 cut(s) 69, 198
Alw44I GTGCAC 1 cut(s) 275
AoxI GGCC 1 cut(s) 156
ApaLI GTGCAC 1 cut(s) 275
ApeKI GCWGC 2 cut(s) 267, 331
Asp700I GAANNNNTTC 1 cut(s) 113
AsuHPI GGTGA 4 cut(s) 193, 229, 320, 365
BaeGI GKGCMC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 254, 318
BccI CCATC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BcoDI GTCTC 2 cut(s) 69, 198
BfaI CTAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 268, 332
BlsI GCNGC 2 cut(s) 269, 333
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 310, 358
BmuI ACTGGG 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 3 cut(s) 83, 110, 284
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 279
BseNI ACTGG 3 cut(s) 83, 110, 284
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 2 cut(s) 254, 318
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 2 cut(s) 69, 198
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 279
BspACI CCGC 2 cut(s) 167, 323
BspANI GGCC 1 cut(s) 158
BspDI ATCGAT 1 cut(s) 366
BspFNI CGCG 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 198
BsrI ACTGG 3 cut(s) 83, 110, 284
BssECI CCNNGG 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 88, 308
BstAPI GCANNNNNTGC 1 cut(s) 331
BstFNI CGCG 1 cut(s) 167
BstMAI GTCTC 2 cut(s) 69, 198
BstMWI GCNNNNNNNGC 4 cut(s) 137, 164, 267, 331
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 254, 318
Bsu15I ATCGAT 1 cut(s) 366
BsuRI GGCC 1 cut(s) 158
BsuTUI ATCGAT 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 366
CseI GACGC 1 cut(s) 173
CviAII CATG 2 cut(s) 68, 119
CviJI RGCY 6 cut(s) 39, 131, 158, 228, 248, 267
CviKI_1 RGCY 6 cut(s) 39, 131, 158, 228, 248, 267
Eco130I CCWWGG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 71, 122
FaiI YATR 7 cut(s) 69, 120, 161, 212, 294, 327, 391
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 2 cut(s) 67, 118
FauI CCCGC 1 cut(s) 330
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 268, 332
Fsp4HI GCNGC 2 cut(s) 268, 332
FspBI CTAG 1 cut(s) 132
GluI GCNGC 2 cut(s) 268, 332
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 158
HgaI GACGC 1 cut(s) 173
Hin1II CATG 2 cut(s) 71, 122
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 283
HphI GGTGA 4 cut(s) 193, 229, 320, 365
Hpy166II GTNNAC 5 cut(s) 6, 61, 103, 237, 277
Hpy188I TCNGA 2 cut(s) 191, 255
Hpy188III TCNNGA 2 cut(s) 287, 337
Hpy8I GTNNAC 5 cut(s) 6, 61, 103, 237, 277
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 88, 308
HpyCH4V TGCA 2 cut(s) 277, 344
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 164, 267, 331
Hsp92II CATG 2 cut(s) 71, 122
LmnI GCTCC 4 cut(s) 44, 214, 275, 339
LpnPI CCDG 5 cut(s) 64, 91, 265, 272, 350
Lsp1109I GCAGC 2 cut(s) 254, 318
LweI GCATC 2 cut(s) 310, 358
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 3 cut(s) 109, 150, 195
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 2 cut(s) 66, 381
MnlI CCTC 4 cut(s) 148, 193, 256, 343
MroXI GAANNNNTTC 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 306
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 4 cut(s) 137, 164, 267, 331
NlaIII CATG 2 cut(s) 71, 122
NmuCI GTSAC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 269, 333
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 2 cut(s) 268, 332
SchI GAGTC 1 cut(s) 277
SduI GDGCHC 1 cut(s) 279
SetI ASST 6 cut(s) 41, 133, 210, 230, 354, 378
SfaNI GCATC 2 cut(s) 310, 358
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 3 cut(s) 109, 150, 195
SsiI CCGC 2 cut(s) 167, 323
SspMI CTAG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 88, 308
TaqI TCGA 2 cut(s) 348, 366
TasI AATT 3 cut(s) 109, 150, 195
TscAI CASTG 1 cut(s) 284
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 267, 331
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.