AT5G28010

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000362
Physical Location & Seq
Forward (+)
10024623 .. 10026051
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28010.1

Sequence Viewer

Length: 501 bp
ATGGCAGAGAAGGTGGAGGTGACCACGATGCCCAAGTCTTCTCTTTTAGGAAAGCTTGAGGTAGAAGTTGAGATCAAAGCTCCCGCGGCGATATTCTACCACATCTATGCTGGAAGACCACACCATGTTGCTAAAGCCACTCCTCGCAACGTGCAATCATGTGATCTCCATGATGGGGAATGGGGCACCGTAGGCAGCATCGTCTATTGGAACTACGTTCATGAGGGACAAGCAAAGGTTGCAAAAGAGAGGATTGAATTAGTAGAGCCAGAGAAGAAACTGATCAAGTTTAGGGTCATTGAAGGAGATGTTATGGCTGAGTACAAGAGTTTCTTGATCACGATTCAGGTGACCCCGAAGGAAGGAGGGACTGGAAGTGTTGTGAAATGGCACATTGAGTATGAGAAGATTGATGAGAACGTGCCTCACCCTGAGAATCTTCTCCCTTTCTTCGCCGAGATGACCAAAGAGATTGACGAACACCTCTTATCCGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

166

Amino Acids

18.88

Weight (kDa)

5.4

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 15 - 165 1.9e-59 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 18 - 156 2.3e-08 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23130 AT1G35260 AT1G35310 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70830 AT1G70840 AT1G70850 AT1G70850 AT1G70850 AT1G70860 AT1G70860 AT1G70880 AT1G70890 AT5G28000 AT5G28010 AT5G28010
fragaria_vesca FvH4_4g32750 FvH4_4g32760 FvH4_4g32770 FvH4_4g32770 FvH4_4g32780
malus_domestica MD00G1063600.v1.1 MD13G1022700.v1.1 MD13G1022900.v1.1 MD13G1023000.v1.1 MD16G1024000.v1.1
prunus_persica Prupe.1G328500_v2.0.a1 Prupe.1G328600_v2.0.a1 Prupe.1G328800_v2.0.a1 Prupe.1G329000_v2.0.a1
pyrus_communis pycom16g02080
rosa_chinensis RchiOBHm_Chr1g0324501 RchiOBHm_Chr1g0324511 RchiOBHm_Chr4g0392511 RchiOBHm_Chr4g0392581 RchiOBHm_Chr4g0392611 RchiOBHm_Chr4g0441741 RchiOBHm_Chr4g0441751 RchiOBHm_Chr4g0441771
rosa_laevigata RLG00000006068 RLG00000006069 RLG00000006070 RLG00000009801 RLG00000030196 RLG00000030197 RLG00000034286
rosa_multiflora Rmu_co8369709.1_g000001 Rmu_co8434885.1_g000001 Rmu_sc0000353.1_g000003 Rmu_sc0000353.1_g000005 Rmu_sc0000498.1_g000002 Rmu_sc0000498.1_g000016 Rmu_sc0001866.1_g000004 Rmu_sc0003124.1_g000016 Rmu_sc0008279.1_g000010 Rmu_ssc0000486.1_g000033
rosa_roxburghii Rroxscaffold_159G00432880 Rroxscaffold_159G00432890 Rroxscaffold_4G00325460 Rroxscaffold_4G00325470 Rroxscaffold_5G00337770 Rroxscaffold_5G00382550 Rroxscaffold_5G00382570 Rroxscaffold_5G00382580
rosa_rugosa Rorug01G0046500 Rorug01G0046600 Rorug03G0339400 Rorug03G0339500 Rorug04G0335600 Rorug04G0335900.1 Rorug04G0336000 Rorug04G0336100
rosa_samantha Rh1AG062200 Rh1AG062300 Rh1BG052500 Rh1BG052600 Rh1CG064200 Rh1CG064400 Rh1DG068300 Rh1DG068400 Rh4AG043500 Rh4AG387200 Rh4AG387300 Rh4BG038400 Rh4BG038600 Rh4BG038800 Rh4BG400900 Rh4BG401000 Rh4CG046300 Rh4CG046600 Rh4CG416000 Rh4CG416100 Rh4DG040500 Rh4DG394300 Rh4DG394400 Rh5AG299400
rosa_wichuraiana Rw0G012190 Rw1G005260 Rw1G005280 Rw4G003410 Rw4G033400 Rw4G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 84, 86
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 175, 362
AgsI TTSAA 2 cut(s) 257, 302
AluBI AGCT 2 cut(s) 55, 80
AluI AGCT 2 cut(s) 55, 80
ApeKI GCWGC 1 cut(s) 195
AsuHPI GGTGA 3 cut(s) 31, 361, 419
BaeGI GKGCMC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 30, 121
BbvI GCAGC 1 cut(s) 207
BccI CCATC 1 cut(s) 167
BclI TGATCA 2 cut(s) 282, 336
BisI GCNGC 2 cut(s) 87, 196
BlsI GCNGC 2 cut(s) 88, 197
BmiI GGNNCC 1 cut(s) 187
BmsI GCATC 2 cut(s) 18, 207
BpiI GAAGAC 2 cut(s) 30, 121
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 84, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 362
Bse1I ACTGG 1 cut(s) 376
BseDI CCNNGG 2 cut(s) 84, 492
BseLI CCNNNNNNNGG 2 cut(s) 175, 362
BseMII CTCAG 2 cut(s) 309, 423
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 185
BslFI GGGAC 2 cut(s) 240, 382
BslI CCNNNNNNNGG 2 cut(s) 175, 362
BsmFI GGGAC 2 cut(s) 240, 382
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 4 cut(s) 72, 163, 282, 336
BspACI CCGC 2 cut(s) 84, 86
BspCNI CTCAG 2 cut(s) 310, 424
BspFNI CGCG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 84, 492
BssMI GATC 4 cut(s) 72, 163, 282, 336
Bst4CI ACNGT 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 318, 432
BstDSI CCRYGG 1 cut(s) 84
BstEII GGTNACC 2 cut(s) 19, 349
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 4 cut(s) 75, 166, 285, 339
BstMBI GATC 4 cut(s) 72, 163, 282, 336
BstMWI GCNNNNNNNGC 3 cut(s) 86, 192, 239
BstPI GGTNACC 2 cut(s) 19, 349
BstSLI GKGCMC 1 cut(s) 188
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 207
BstV2I GAAGAC 2 cut(s) 30, 121
BtgI CCRYGG 1 cut(s) 84
CciI TCATGA 1 cut(s) 220
Cfr42I CCGCGG 1 cut(s) 87
Csp6I GTAC 1 cut(s) 322
CviAII CATG 4 cut(s) 125, 159, 170, 221
CviJI RGCY 5 cut(s) 55, 80, 137, 268, 317
CviKI_1 RGCY 5 cut(s) 55, 80, 137, 268, 317
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 318, 432
DpnI GATC 4 cut(s) 74, 165, 284, 338
DpnII GATC 4 cut(s) 72, 163, 282, 336
Eco91I GGTNACC 2 cut(s) 19, 349
EcoO65I GGTNACC 2 cut(s) 19, 349
FaeI CATG 4 cut(s) 128, 162, 173, 224
FaiI YATR 7 cut(s) 108, 126, 160, 171, 222, 314, 402
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 2 cut(s) 240, 382
FatI CATG 4 cut(s) 124, 158, 169, 220
FauI CCCGC 1 cut(s) 91
FbaI TGATCA 2 cut(s) 282, 336
Fnu4HI GCNGC 2 cut(s) 87, 196
Fsp4HI GCNGC 2 cut(s) 87, 196
GluI GCNGC 2 cut(s) 87, 196
Hin1II CATG 4 cut(s) 128, 162, 173, 224
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 343, 436
HphI GGTGA 3 cut(s) 31, 361, 419
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 3 cut(s) 221, 334, 340
HpyAV CCTTC 4 cut(s) 4, 296, 352, 356
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 3 cut(s) 150, 216, 420
HpyCH4V TGCA 2 cut(s) 154, 242
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 192, 239
HpyF3I CTNAG 2 cut(s) 318, 432
HpySE526I ACGT 3 cut(s) 150, 216, 420
Hsp92II CATG 4 cut(s) 128, 162, 173, 224
Ksp22I TGATCA 2 cut(s) 282, 336
KspI CCGCGG 1 cut(s) 87
Kzo9I GATC 4 cut(s) 72, 163, 282, 336
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 5 cut(s) 96, 282, 332, 357, 444
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 2 cut(s) 18, 207
MaeII ACGT 3 cut(s) 150, 216, 420
MaeIII GTNAC 2 cut(s) 19, 349
MalI GATC 4 cut(s) 74, 165, 284, 338
MboI GATC 4 cut(s) 72, 163, 282, 336
MboII GAAGA 6 cut(s) 30, 126, 286, 418, 431, 442
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 1 cut(s) 257
MnlI CCTC 9 cut(s) 10, 52, 153, 217, 243, 359, 435, 487, 494
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 86
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 86, 192, 239
NdeII GATC 4 cut(s) 72, 163, 282, 336
NlaIII CATG 4 cut(s) 128, 162, 173, 224
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 481
NmuCI GTSAC 2 cut(s) 19, 349
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 2 cut(s) 343, 436
PkrI GCNGC 2 cut(s) 88, 197
PspEI GGTNACC 2 cut(s) 19, 349
PspN4I GGNNCC 1 cut(s) 187
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 105
SacII CCGCGG 1 cut(s) 87
SatI GCNGC 2 cut(s) 87, 196
Sau3AI GATC 4 cut(s) 72, 163, 282, 336
SduI GDGCHC 1 cut(s) 188
SfaNI GCATC 2 cut(s) 18, 207
Sfr303I CCGCGG 1 cut(s) 87
SgrBI CCGCGG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 257
SsiI CCGC 2 cut(s) 84, 86
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 3 cut(s) 153, 219, 423
TasI AATT 1 cut(s) 257
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 343, 436
TseFI GTSAC 2 cut(s) 19, 349
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 2 cut(s) 19, 349
TspDTI ATGAA 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.